mRNA_H-canaliculatus_F_contig100.25.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig100.25.1
Unique NamemRNA_H-canaliculatus_F_contig100.25.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig100.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig100contigH-canaliculatus_F_contig100:34239..36707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig100.25.1prot_H-canaliculatus_F_contig100.25.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig100 34338..36707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928627.0043924-UTR-H-canaliculatus_F_contig100:34238..343371622928627.0043924-UTR-H-canaliculatus_F_contig100:34238..34337Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 34239..34337 +
1696845500.0248418-UTR-H-canaliculatus_F_contig100:34238..343371696845500.0248418-UTR-H-canaliculatus_F_contig100:34238..34337Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 34239..34337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928627.0229044-CDS-H-canaliculatus_F_contig100:34337..346911622928627.0229044-CDS-H-canaliculatus_F_contig100:34337..34691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 34338..34691 +
1696845500.1016107-CDS-H-canaliculatus_F_contig100:34337..346911696845500.1016107-CDS-H-canaliculatus_F_contig100:34337..34691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 34338..34691 +
1622928627.040309-CDS-H-canaliculatus_F_contig100:36503..367071622928627.040309-CDS-H-canaliculatus_F_contig100:36503..36707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 36504..36707 +
1696845500.1333005-CDS-H-canaliculatus_F_contig100:36503..367071696845500.1333005-CDS-H-canaliculatus_F_contig100:36503..36707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 36504..36707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig100.25.1

>prot_H-canaliculatus_F_contig100.25.1 ID=prot_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=186bp
MCPTKVDDGNSSTESSRTSSYSSDDESSLDCIISNSSVIPPPSLTEDTTL
LASPEPCTQAAQVRKMTLASLLSLAIAISVGCFGICLAGLCGADDGRSGG
GQKAELKTDLDVARLPQEGKPHIWERPIRGVLRRLRDGQEGRRKRRRLES
EQENSREGPGEDMGRKSNRKKRKQNGDGSRSSGGEG
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mRNA from alignment at H-canaliculatus_F_contig100:34239..36707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig100.25.1 ID=mRNA_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:34239..36707+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGGTGCTTCCAACTTCTTCTACCACACACGCCCGACGTGAAAGCCGCG
CGCGTTGGGTGCCTGAATACGGTTGACCTCTTCCCGAGGCCTCCGTTCGA
TGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCAGCAGA
ACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATCATCAG
CAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAACGTTGT
TGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAATGACA
TTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGCTTTGG
AATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGGCGGGG
GGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTACCCCAG
GAGGTAAGTCAGCCAGCGTCTGGTGCGGACAGCAGTACTTGGGAAACAAA
CCGCACCTGTTCGACTCGCGAACAAAGAACGAGAGTCACCCGAAGTTCAT
CATCGCCGCCGGCGAAGCCCATGTGGCGCGCTACCCACGACCTTTCGTTC
TTCATGATAATTTCCGTTTCGAAGTTGCCTTGCTGGTGCCAGCAGCGGAC
CAGGGGACGAGAGTGGAGGTTTGGGAAATCGTCCGTAGAGAGCACACGAG
ACGTTCACAGACTCCTCTCGGCAAAGTGTGCGAGCTGCTGAAGCATCTCA
GCGTCTATGAGGTAGTCTTAATGCTGCTGTTGTTCTATTATTGTATTGCC
CGCTTCCGCACGGATTTCAACTGCTGGAAATCACTCCTCTCGGCAAAGTG
CGCGAGTTGCTGAAGCATCTCAGCCTCTCTGAGATACCATTTAGTCGTCA
CTCTGCTGCTCTTTTTTCATCTACTGTAGTCCTCGATTCCGGACGGATTT
CAACTGCTGGAAATCACTCTATATGGCTCATCGCTCTGTCATCGCACCAC
TCCCATCCTCTGGTCAAGTTTGTCTTCATACGCTACCTGCCCGTTCGGGG
CGAACTCTGTCGTGATGCCGACGCAGTTGTCGAAGGCGTTGTGGCGTGTG
GTGGGAAGGCTTCGGTTTTGTTCCTGATGTGGGAAAACATGTCAATCATC
GAGAGACAGCCCCAGGGGTTATCGAAGGCCCGTTTTCCGCTACAATCGCT
TCGCCTCGCGCAATCAGCACAGGGGATGATTTGAAAAGGAATTGACAAGA
GCCCTCTGGGGCAGTGTATGCCTAAGACGGTACTCCTTTAGTGTTGTTAA
CATTTTTTCAAAAAATCATGTAGCCCGTCCGATCCTCTACAAGTCTACTG
CTTCGCCAAATGGCTCGTACAGACCGTTCATACATCCAAAATGCCGCTAT
ATGCCAGGCGGGAGACTTTCAACTTGGAATTTGTTTTCAACTCGTAACCA
AAACCACGAAGGGCAATTAGTTTGCGGGGACGTGACGAACGACAAGGGCA
CCAGTAGACACGTCCCTAGAATCCAAGGGGCTAGAACAGCGCATGACTCA
ACAACGGGTTTCAAAGATAGGTCTCGAACAAGGTGGACCAGACTTGTTGA
ATACCATGTGGAAGAATGGCGTTTTTCTGTTGAGTGAACCACCTTCCTTA
GCATTGGCGAGACGAAGAGCTTGATGGTTGTACAGAAGAGCTCAGCGCTG
GTCTGCAGGGGTCTCCCGGGATCGGCTTAATATGTTGAGCACACGAACCA
CGGTGGACATGGTTGCCCTCTGGAGTACCGGGGGCGAGCGGGCTTGTCTT
TCGAATTGTTGCTGGCCTCTCTTCGGCCGCCGGCAATTCGATACTCATCC
AAGGAAGATCCCTTCACCCATGTGTCAAACCCCAAAGTTCGACCCCCCTC
CAAGCCAAAGGCATAGCAGGGTAGTGTTTTATGTTTTGCCTCTACGCTAA
TACCCTGAACGATCCGGCGGCCTTCTATTCGTCACCTCATGCTCGCGCAC
GTATGATACAGGCGACATAGCCGTCGAGCAGGGTACTTATACCAGTAAAC
ACCGAAAGAAACAGAATGCTGATGTTCCGTTCACGCCAACCTTCGTCCAT
GACTTGAACTTGATCATCGAATTTCCAGAAAGTATCTCCAGCCATGTGCC
TGCGGCTCTTCTAGTACATGTGAGACCGACTCAAATTATGAGACTCGAGG
TCCTTTGCGTTTCAGTCTCTCCTTTTCTGCTTCACTTTCTTGTTAATGCT
TGCTTTTGTCAACAGGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGG
CGTCCTCCGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAA
GGCTCGAGTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATG
GGCAGAAAAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAG
GAGCAGCGGAGGCGAAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig100:34239..36707+

>mRNA_H-canaliculatus_F_contig100.25.1 ID=mRNA_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1116bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:34239..36707+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCAGCAG
AACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATCATCA
GCAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAACGTTG
TTGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAATGAC
ATTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGCTTTG
GAATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGGCGGG
GGGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTACCCCA
GGAGATGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCA
GCAGAACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATC
ATCAGCAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAAC
GTTGTTGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAA
TGACATTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGC
TTTGGAATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGG
CGGGGGGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTAC
CCCAGGAGGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGGCGTCCTC
CGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAAGGCTCGA
GTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATGGGCAGAA
AAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAGGAGCAGC
GGAGGCGAAGGAGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGGCGT
CCTCCGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAAGGC
TCGAGTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATGGGC
AGAAAAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAGGAG
CAGCGGAGGCGAAGGA
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