mRNA_H-canaliculatus_F_contig1262.2199.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1262.2199.1
Unique NamemRNA_H-canaliculatus_F_contig1262.2199.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1262.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1262contigH-canaliculatus_F_contig1262:12978..25345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog2880.D8LL51
Preferred nametop3
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031323,GO:0031422,GO:0032200,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size630
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1262.2199.1prot_H-canaliculatus_F_contig1262.2199.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1262 12978..25345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.2132883-CDS-H-canaliculatus_F_contig1262:12977..133061622928982.2132883-CDS-H-canaliculatus_F_contig1262:12977..13306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 12978..13306 -
1696845637.829755-CDS-H-canaliculatus_F_contig1262:12977..133061696845637.829755-CDS-H-canaliculatus_F_contig1262:12977..13306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 12978..13306 -
1622928982.2342675-CDS-H-canaliculatus_F_contig1262:22956..231491622928982.2342675-CDS-H-canaliculatus_F_contig1262:22956..23149Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 22957..23149 -
1696845637.8411627-CDS-H-canaliculatus_F_contig1262:22956..231491696845637.8411627-CDS-H-canaliculatus_F_contig1262:22956..23149Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 22957..23149 -
1622928982.2498693-CDS-H-canaliculatus_F_contig1262:25237..253451622928982.2498693-CDS-H-canaliculatus_F_contig1262:25237..25345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 25238..25345 -
1696845637.8509357-CDS-H-canaliculatus_F_contig1262:25237..253451696845637.8509357-CDS-H-canaliculatus_F_contig1262:25237..25345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 25238..25345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1262.2199.1

>prot_H-canaliculatus_F_contig1262.2199.1 ID=prot_H-canaliculatus_F_contig1262.2199.1|Name=mRNA_H-canaliculatus_F_contig1262.2199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=210bp
MGSLEAASSVFSGNVRLGNSLMRLKTTMERARQLVESCQNPRSYLGRMTA
LPGANDKKGQLVEVEAELQRIMDGLIIPMLTDIRRHQQGNDPGGGERKEP
GTTSRATPGLTSHSSPPRPHGERLPGMIASTATMRDGTKITGLMPNLQNH
FTPDEREALMSFHRLSQPPGSRWRRSAGWGSSRESWSGVTVEYSRFYVTA
IALPDNNLAG
back to top

mRNA from alignment at H-canaliculatus_F_contig1262:12978..25345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1262.2199.1 ID=mRNA_H-canaliculatus_F_contig1262.2199.1|Name=mRNA_H-canaliculatus_F_contig1262.2199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1262:12978..25345- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCGCTGGAGGCCGCGTCTAGCGTTTTCTCGGGAAATGTGAGACT
CGGCAACAGCCTGATGAGGCTGAAGACGACCATGGAGAGAGCGCGCCAAC
TTGTGGAGGTATGGTGCTGAAATCTCCACTTGAATTTGCGCTACGAGTAT
GCTGTAGTACATTTACCTCTTTCCTTTCCGAACCTGAAAGGCAGCATTTC
TACCAATCTGTCGCCCATCCAACCTCGATCTCTCACAGCATATCAGTCTC
ACTCGTGTGGCCAACTTGGGTGTAAAATGTGAAGAGACACGCGGAAGAGA
TGGTTTTTGTTCCAGTCGGTAATACTTTTATCAGTGGATCATCAATCGGT
TCATAACGTAACTCAGAGAAGAAAGGGGTCAAGCGTTCGTGGTTTTTCGG
CCCTGCAGCAATGCACGCACGCTGCTTTTCGAACGTGAGTGAGGGGTTTT
CCCGGCCGACCACGTGCGTCCCAAAACTCTTTCTGTAACCTCACGTATAC
AGACGATCTAACGCGGGTCGCAGCTGATGTGTAGAGTGCTGTCCAAGTTG
GGGAGAAAGGCACACATGTATCCTCTGCTACAGACGCCCGCACGCTGCTC
TGGCACGTGCTCGCAAACACGAGAAATTCTACGCAACGTGCAACCTGATT
GTATCACTTATTACGTCATTTACCGTTTGTTAATCGGGGTCCTTCCCCCC
CCCAAACGGTGCCCTCCCCTCCCCTTTACCTTTTCGGGCTGGTAGCATGA
GCACGGGGTTGTCCTCCCGGGGTATTTTAGAAAAAATAAATCCCCTCGGG
TATCTATCATGGATTTTCACCCGGGGGCGTTGATGTTTCAGGGAAAAGAA
TCCCTCCCCGGAGAGGTGGTGCTCTCCTATGTTTGAGTCGAGATTGTGAC
GTCGCAACGCCATGAAGTATGGTATTTGGCCAAATTTTGCTATGATCTCC
ACGCCGGTCAGCCGGGCGAACTCGAGGTTGCTTGCGCGCAACCTTCCAGC
GACCAGGCAAAAATTCGAACCTCGGCGAATGTGTTTTTTTTCTCACTGTC
GTGTCTGGAGGTGGAAAGCGGTAGAAGGCTAAAAAGCTTCAATGTATGTG
TAGACTAAACAAAATTCCTTTTGAACTCAACAGAAGCCTCGGGGTACGCC
TCACACGACGTACCTCAGGAGGTGTTCGAACGGTGTTGTCATGTTATCTT
TAAAAATTCGGCTTCATCGTCGACGAGGGAAAGGGACGGCAGAACCCTTC
TTCTCGCGATAAAAAATGAAGGCAACCACCCCAGGAGGAAGGCGGAGCAT
CCAAGAAACATAAAAAGAAGAAAGGAGCCCCAGTGTTCGCCTCCTACTCC
TGTCGGACCCCGGTTGGTTCAGATGGTAAGGGGTATACATTGCACAATCG
CAGTCCTCTGAATACACGGCAAAAGTGCACGTCTCGCCTTGACCGGAGGG
ACTGTGTTACCAACAAAGATGGGCAGGGCACACACACACACACACACACA
CACATACACACACACACACACACAACTGCAAATCCAGAAGGAAAAAAAAG
GAAAAATGAGGACACAACCAAGGGTCTGCTCGGATCGGATTTCAGGACAC
GTACGCCCCCCCACCCACCCCTCAAAAGCTCGAAATATCGATCTTTATTT
ATATAGGAACTTGTGTATGGGGGCCCGGCTTAGGACTCAATGCCGCCCAT
CCCCCCATCAACTGCGGGCCCCCCTTAGAACATAATATGGACTATATTAT
ACCCCCCCCCCCTCCCCTCAAAACGGCGAAATTTCGATCTTTGGGCATAC
GTGTCCTGAAATCCGATCCAAGCAGACACTTGACACGACGCAAAATATCA
ATAAATGGACACACTCCAGGTAAATAGCGGCGAATTTTTTTTTCGTCCGG
GTATCACGGATTTCCCACGGTGGGAAATTATTTCAGCAAAAAAAATCCTC
TCCCCGAGGAAAAACCCCGGTCCGTACGATAGAGCACCAGCTTAATATTG
ACGTTCGCTTGAGCCTACTATAGGTCCACATTGCCCGCGGCGTAGGTACA
CGCGATACGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGGGCCCTGAAAATGGAGCGCTTACTACCGTTCTGC
ACCTCCTCCCTCGTTCCTTGTTTGTTTCATCTGCGGGGCGGGGAAGTCCT
GCCAAAATCCCCGGTCATATTTAGGGCGAATGACGGCTCTCCCAGGAGCC
AATGACAAAAAGGGACAGCTGGTGGAGGTAGAAGCAGAGCTCCAGCGGAT
CATGGACGGCCTGATAATACCAATGCTAACCGACATCCGGAGGCACCAAC
AAGGGAATGACCCCGGAGGCGGAGAAAGAAAAGAACCCGGTGTGGTCCTC
AATCCCGAATTTCGTGAGTTCAAGCTTCTAAATTGATATTGCGACTTTTT
TTTTTAACAGCTGAACCCTTCCTTGTCGTCACAAAGAAGAATGCAAGCAC
CGCAGGAGTAAGGTGTGGCAAAGGAAAGTAAAAACAAGAAAACAGCCCCT
GTGTGTAGACCAAAGCTGCTAGTACTCTATCAGCACGGCAGCATCATGCC
GAGTCTCCCCCCTATGTTTGAAAGAAAACGTTACAACACCGTTTTAGAAC
ACCTCCTGAGGTTCGCCGTGCGAGGCGTAGCTCGAGGCTTCTGTTGAGCT
CCGAACAGTGAGGGTTCATTGAGACCGGTTATTATGGTGACACAATATTT
TGTGAAAAATTTTCTTGGCTGCGAAGATTTGGCCGCAAACTTTTCGTCTT
TCGAACATTTGGTCGAATGTGTTGTGGGAAACACAATCTTATCTTGCGAG
AGGATCTTCAAAATGTGGTTCATCCCAGTGTCGTGGCCCTTTAGCGTGTG
TTTTCCACCCAGCAGATGTCTTGTCGTCTACGGAGCAGGGATATACGTAG
GGAGCAAGCTACGGGCTCCGAGCAACCCCAGAGTTGCCGTCTTGAAGCGT
TTACAGTGACATGTGGCAGGAGCTAGCGAGGAGAACGAACAAACGTTCTG
GCGGGGGTCGAGGGTTAGGGGAACCGTCTCGCCCTGGCGCGTGAAGCATG
AAGCAAGTCCACTGCCGGTCCTGTCGCTGTTGACTTCAAACAAATAAAAT
GGCAGCGCACACTCGATGGCTCGCTTGCTGGGACATGCACTTCTTTCTTA
CACTTCGAATCTCGTGGCCTTTGTTCTTCGGTCGCAAGTGCAAAAGGCGC
GTGCGTGTCTCTCGGCACCAAATACTGCTGGAGAATATCGCGCCTTTTTG
CGCCCTCGCTGCGATGAGCCCCAGCTTCACAACGCCGACAAAAAAAGCGG
GAAGAGAGTGCCCCGATGTTTGGCTTGACTGTACTTTAGACCGGCGCTCC
TGAATTCCCGCCGCCTCAAGATTCGTTCGCCTCTTGACTGATGCTACGGT
TGGGGAGACACTTGTGGGCTCACTTTGAGCACGATCAAACTGTAAGGGTT
TTGGACGCTTTGGCCTTCGCACCTGGGCTCCCCTTGAAAAACAATCACAC
CCTCTCGTCCGCCAACACCGACGAACCATTTTCACGTATTGTGTTCCCCA
GAGTGAACGTCATCGCTTCGAGAAGCGACGTTTAGTCTTGAATTCCAAAG
TGATCGTTTCGCTCGGGAAAGCGACCCCCCCATTGTAGTATCACTCTCTC
CTGTCCGACCAACTGTTGGTCAAGAGTTGTTCCAAAATGAAGTTTGCTGT
CAAATGCAAAAATTCACCAAGATATATCACAACATTCACATTTGCTCTGT
AGCGTCTGCCAGATGATCTGGATGTGAGTACTACTTGCGAGGGACTCCTC
CAGTATCGCCGGCCTCGTGCTCGATAAGTTCACCTTAGAGCCTTCTTCAT
TAACGGAGTGATCATCACCAGATCACGAGCCAGAGAGCTCGAGGACAACA
CCTTGGTTCCCTCGCTCCTGCTCCACTCATCGTACATGCGATTACCCTGA
AATCCTATGGCTTGGTACCTTTTTTTGGCTACAGCACCCCCAAAGCTTGT
TCAGCCTTGAGATGAACGAGCTGGACAGCCAAAATAAAAGACCAAGACGA
AAGCGCATGCTTCCCACACGACGATATTATATTCCGCATGTAGTTTACTT
TTTAGCGCCCTTGTCAGCCGCAATTTACGGAGTTCCTTCAAAACGAACGT
GGGCGCGGAGTCGTAAATCTTCCTCAAAGGCTCCCACTTGCGTTCGTCAT
GATCAAATCCGTCCCAGCCAACCAAAACAATGATTGCACCATCGTCATTC
TCCGTGACATGCACGATGGCATTCATCCGACATTCTCCCTGAGCATAAGA
ATGCTGAAAAACATCCTTTAACTCCGCAGTAACGTTCAATTGCCTATCCG
CATAAAAACGCAAACGCGCAACGTGAGCGTTGTGTGCACCTTGCTAGAAA
CAATTGTCTGTACCGAGTACACGTGCGCGTGATCAGCTCCTACGACACGC
CGTGGACCTGTCCACGTAGATATCAGTCTGGGAGCCAATCCTTGCCTACG
GACACGAGCGAACAACACGAAATCACCTACATCAAACTTGGGCAACACAG
CCTTCCCTTGTGCTAGTTTACGTTTGGTCTCGCGAGCTACCGCTACGGCA
CCTTGCACCTCTTGACAAAAACGCGCTTGCTCGTCAACCACGTATCTTAC
CTTCTCGCGCAGCGCATGAGCATCCATCACGTCTACGTTCCACTCTCCGC
CTGTCACTGACGCCAACGCTGAGATCGACGTACGCGGCGCACGACCAAAC
TTTACGCAATACGGCGTACTGCAGTAACGCTCGCGAAACGAAGTGTTTAG
AGCCCATTGAGCGGTCGGCAAAACGTCAACCCAGTCAGATACGGTCCTTC
TCTGATCAGACAGAATTGACTTCAAGGCACGGACGACTTCCTTGACCATT
CTCTCGCACGTTCCGTTTGACCATGAGGTACATGCAACAGCAAAGTGGTG
TTCGACTTGCAACGCCTCGCAAGGCTGTGAAATCACACGGTTTTCGAAAC
GCGTGGCAGTGTCTCTCACCCACACACGCGACACCCCCGTTGTCTTACAC
CACTGCAACAAGTGCTAAGCCGTAGCCTCAGCTGTACACGACTCTGTGGG
TTCCAGCGAAACGAAGTTTGACAAATCGTCCATGATGACCAAGACATATC
GAAATCCATGGTCATCCCGCAAACCATCACCGCCTTCCGGCTTGCTGCAC
CCGACATACAAATAATCGAAATAAACGACTTCGCCGGGCGCGGTGCCATG
CACTGTTAACGGACGGGGCACAGATTCACCAGCGCGCGTATCTACACGAT
GCAAACAATGATGAACGAATGCGCGAACTTGGGCTTCATGTGTTGCCAGA
CACAGTATCCCTTCAAACGAAAGAGAGTCGGCGCCATCCCACGGTGACCA
GTCGATCGCATGTGCGCGCACACCATTAACCTCACTTGAAGAGCCTTGTC
TGCAGAGGGAATCCATAGAACATCCTTGTTCCCTACACAAATCCGAAACA
ACCAATCATCAGCAAAGGTAGCTTGACCAAAAGTCGTCGAAAATGACCGA
ACTCCTACGCCGAGACTGGCAACAGCCTTTCTCTGCGACGCCCGAATAAC
GTCTACCGACGGCAGATAATCGTCTGCATCACATGGGCTGTACACTGCAA
CAGATCGGACAGGCACGGTAGGAATCCTTACCCACTGAGACAACAGATCT
CCTCAACAGTTGCGCTCTCCAGGGATGTGCTCGATCGTGAAACGGTACTG
ATTAAGGACGATCTTCCAGTTCTCCAGACGCTGTGCCGTGGCTTTGGTCA
CAGACGTCACACACGCCTCAGCGTTGAAGATGTATCGGAGATTGCGATGA
TCGGTGAAAATGTTAGCACCACCCCACAACAAGTACTCCAGTCTGCGAAA
AGGTGCTTACGTTCGCGGATCCTTTCTTGTTCACAGTTGCCCAACGCAGC
TGCGAACTCTTGGATGTGCCGCTCCGAAAAGCCAGTGGTTCATGCGACAC
ATTTGCCAGCGCCACACCACTGCGGAACTCCTCTTCTGGCACCTGAGTCA
AAATCCTTCTCCAGTGAAAATCAGACGCATCAGGAAACATCAATACCACG
CACCCTGGACGAGGATGATATAGCGGCACCGCTTGCACCACCAAATCCTG
CGCAGCGTCCCATGCCTTCACACGATCCTCCGTCCAAGCGTGCTCCGGGA
TGACACGACTGCGCGCCACCCTCTTCGTCATACGCGAAGCGCCTGCCATC
AGTTCCTCGAAGAAACACGCAGCGGGCCCACAACCTCCTCCATATGCAGC
AACGACGTACGCTGGCAATTGGCAGCTTGCAAGAACTGCATCAGCTCGCT
GGCGATTTGCGGACGACCTATATCAGTCAGACCTTGGAGACGCGCGGGAT
CATGTGACACAACCCAATTTGAATAGACCTTGCGACACCATTTCATCTTT
CGAGCAAAAATGCACTTGTGAGCGGCGACGAACAGACCAACTCTCTCTCG
CCTTTCAAAATTTTCATGAAGCAAACGTAAGAGAGCCTCTTCAGAATCGG
CGAAGTAGAATACCTCATCCACCCACACCTTGCAGTCCCAACCACGCAAA
AGGTCAGTCATTACACCTTGGAAGTACGCAGTAGCGTTGAGTACTCCCTA
CGGAATACGAGTAGGGGTAAACAAACCCTCCGGGTCCACGACCCACCAAT
CGCTCCATCGCGGCGTCCGCGGGAGCTCCCTCCGTCGCCTCTGGCTGGAA
GGAATCGATGGACACGGTCACCCGACGAGGGGTGAGAAAACCCGGACTTT
CCACCCCTTGTTGCACAGACACGGCGCGCGGGCGCAGCCTCTCCGAGGCC
AAAGGGTGGAGGTCAATGCCGAGCTCCTTGATGGTCTCCATGCCAAACAG
AACCACGTTGTCGGACCCAGGCATAACAGCAAACGTGACGGGCGGCATTT
TCACAGCCCCCCATGGCGTTCGCAAGCTATCCTCGATCGGCACGGTCTTG
TGCGTAACCCTGACGACGTTCCCCGTCGCAGTACGCGCCGTTTGAGTCCC
ATTCTCGAACGGAATCTGCAGGTGCGCCCCCCCGAAATGTGACGACATCT
GAGACAGCAACCCAACGCCGATGGAGGTGAGAGCATACCCAGAATCTAGA
AAGACCCAAGCCGTGAACGAACCGACGGATCCAGCCAACGAAAGGATCCG
CGCGCAAACTCTGCGCTCTGATCAACAGGAACCTCACCTGCCGAAGGACC
CTGTCCTGTCTCAAGGGTCACTTGACGCCACGGCTGCGCTTCAGGAGCCG
GCGTCGTAGAAACAGAATCGGCGCTCCACCCGGACCACGACGCCGAGTAT
AAAGAAGACGCCGATAGACTCGCGGCAGTCGCAGATGTATCAGACATGAT
TCCCGCCTGACCGAGGGGTTGCGAGCTACCAGCTCCAGCACTCCCCATCG
TATTTCCTGCTCCTCCAACATACACCGCACGGCCTGACACAGAAGAAGCA
GTAGACCCTGCACTCGTTCCGGATGGCCCCGCCGATGTGGCAGCAGCGGG
GGGACCACCATTCGCTGCTGGTTGGCGGCCTCCGCGGCCCTTCACGCGAC
TGCGATTCCCGCGGCCTCGCCCACCTTCTCTGCTCCCGCGGGACTCTGAC
GACTCGCGATCTTCATTTTTCGCCGCGCCCCGAGCGCGACTCTTGCGGCA
TTCCTAAAACTTCTGTCCAACCTCGCCGCATTTGAAGCGCGTCGGCCTCC
AAGACAACTGCTGTGACGACTGCTCTTTGGGAGGTTCGGCCTTGGCGCCC
ACCAGAGCGCGCCGAACCTCCCGCATCGCTGGAGCCATGTACTTCCACCA
CCTTCCAAGACTCCGCCAAATCCATCGTTTTGCGGCTGCTTTTTCCACCC
TTCGACGTACGTTAATCGATGGCGGACGTAGTTTTGGGAGGATGACGGCG
AAATGCCGTCCACCAGAGCCCGCGAAACGGACTCAGCCGGACCAGGAAGA
TATTCCCCGTTGCTAGCCCGGTTTAGGGCGTCGACACTGGGGTTCTCGCA
GAAATAGCGTTCTAAGGCGGAGCTGACATGCATCACGCGATCCTTAACGC
TTCCTGCTCCAGACTGCATTCTTGCAACGCGGCGAATTTCAACGGAGGCC
CTGTATCGCACGCTGTTCCCCGCAGCACTCGTTTATCCTGCGTGGTCCTC
CAAAGCTGCTAGCAACTCCTCCGTCTTCAACCCCCTTCGTCCACAAAAGT
GCTGAGCGAAACATCGCTAGACGAAGATGGGTACTAGCTGACTCACGCTC
ACGACTTGGCGTCGCACATCTCTTTCAGCGTCCGCGAACTTGACACGCTC
TTCACAGTCCAGAAACGCGGCGAAAACAATTCGTGATGCCTCTCCGCCCC
ACGAATCGCCATATTTCGGCGGGTTCAACTGCTCACCCATGACGACGGGT
GTCGCCACATCGCGGTCTCCTGTCCGCGACGCGTCCTACAGGACCTTCTC
AAGATTCGGAGAGACCTGCTTGTGCGTCCTCCAGCCCACGGAGCGTCCTC
GACCGCTGTGCACTTCAAGTTGGTCTCGATCCGACTGCGGCCGAGCTGCT
GTATCAGCTCCGGCCCTATCCCTCCGCCAAACTCCTCCAACAGAGTTCCG
AGAATATCTAGATATTGTAGCCTCTGCCAGATGATCTGGATCTGAGCACT
ATCTGCGAGGGACTCCTCCAGTATCGCTGGCTTCGTGCTCGTTAAGTTCA
CCTCAGAGCCTTCTTCTTTCACGGAGTGATCATCAACAGACCACGAGCCA
GAGAGCCCGGGGACAACATCTTGGTTCCCCCGCTCCTGTTCCACTCATTA
TACATGCGATTACCCTGAAATCCTACGGCGTGGTACCTTTTTTTGGCTAC
AGCTCCCACACTATGACCGTCCAAATGTATTGGAGCAAATGTTGGCCAGG
ATAAACTTTTTACCCCTACTTTTTGTGACCATAATAAGCGGACTGAGACC
GTTCCTTACGGTCACGTTCTTTCCTCTTGTATTTCAGCAAAAAACGCCAA
AGGCTCCGGACGGAGAGGCTTCTTACGGAGCGCTTTCCCAGGAAATACGG
CTGGAAAAAAACGGGAGGGCAGATATTTTGTCGGATCCGCCTGCTCCTCC
TGTAGTATTTTTTCCCAGCCCGTTTTTTCCTCCCTTTATTTTGGGGGGCA
GGAGGTCAGACGAAACACAATCAGCTCTTGCGACTCGAATTCTGGATGCG
ACTCGCTCATCAAGGGCTCCGAGCATCCCCATGTCCAATGTACAGCACGT
CTGGTCACTGGTTGGGGTCGATCGGTTGCCAGGCGCGCTAAAAAAAAGCA
TTCCACCCTCGGACGATGGATGAAGGAAGGGCCCGCCCCGCGTTCTTGGA
GTCAGAATGACAGATTGTCGACACGTACACCTGAGCCTCCGAGGGCGCCG
TATCAACTACTCGCTCCCTAGGCAACCGATCAAGCTATAACCTGGAAGGA
TGTCACCTCCATCCGCTCCTTTTAGTCGGGTGGTCTCGGTGCTGCACTGG
GCTGCGTCGATCAACAGGGCTGACCGACGCCCTCTCCTCAAACGCTTTTG
CGCTTTTGCAGTGTTCATCTCATTTTTGCCGTTCAACCGCTCTTCTATTT
CTCAGTCCAAAGATGGGAAGACTTTTTCTCGTGCAAACATCATCGTCACA
GCGTTTTACAGGTGTCTTTTCGTTGATCGCCTGTGCCCAAATATTTTCTT
ATAGCGCGCCTGACGAGCGACCGGCCCTAATCGGCGAGAGAGAGAGGTGC
TGCGTGTTGAACATAGTGATGCTTGGAGCCCTTGATGAGCGCGCCGCGGT
TAGTATTTGTTGCAAAATGGGAAAGCTGGTGTACAAAGTGCAGGATATGC
AAAAAGGACAGCCACACCTCGTTTTCCAGCCTTGTCTCACCAAACCGTAA
GAACCCCTCTGCTCAGGCCTGGCGTTATTTCCAGCACGTCTTTCCCACGA
GTATTTTTTTTTTAATATGGCTGGAAAAAGCCGGCCGAAAGAAACAGCTT
GATGGGGACCAAAGCATGAACACGACAGAGTTTTGTGTAACTTACCGCAA
ATAGTTGTATGAAATATAACATGCACAGTACTTCGAAAATGAACTTGTTA
TCATCGTGAACTACGGCAAGCCATAAAATACATGAGTGTAGGCTCTCCAA
AAATACGTCCTGTGATGAGACGCGAAGGCTTCGAGTACGTGAAATAATTC
ATTGCAGTCCAGGTAGTATTCAATTGGTATTGCACATCTCGAGAACATTT
CAGTGGCGGAGGAGCAGAAAGAAGCAGATGTAGTGTCCCGGACGAGAAGG
TGCATGTAGGTGCCTATCCTCAAAATCAGCGGTGGTTGTACAAGTTGTAC
TGTCGACGAAAATACCTCAAATTGGTACACACTTGTAGGCACGCAAGCAT
GGTTGGAAGGAGAGATCTTGGGACAAGAGGAGATGTAGCGAGAGAGAGGA
TGCACACTTCTCTAACGCGTTTTCGCATCGTCTCAAATATCCAACGGAGA
GAGCTACGTACACGGCTGCTCCGAAAGTGAACGGGAGGGGGGAGGGGGGA
GCTAAAACGAAATGGCAAACTATCTCTCTAGCTGCTTTCATCTGACGTAG
ATATGGAAGATATGTGGAGACCACGAGGATGTGTATCAGAAATCCACAAG
ATGGGAAAGTCGTTGTTGTGAATGCTGCAGCAGGTTTCCCGTGTCCCTCG
CAGGGGCGCAGCAATCCGCTCATTACGTTTTTCTGTGCTGAAATGCGGGG
GGGGGTACGTATGCTTTGATTTTTTTGATGTATATCTGCTGGGACAGAAA
AAATACTAGTCCAGAGAGGAGATTTTTCATGTTGCGTTTTTCGGGGGCAC
CCGAATCTTTCTCACTGCTTCATATCGGAAACGTCTGATGGATGTATTTT
CAATACAGCCACTAAACGTCACTGTAGCCCAGACCGCCGTGGCAAAAAAT
CACACAGTGGTTTCCGGTTTCTTCATCAACACCCCAAGAACACAGCACAG
CGTTCCAGTAGCGACGCCACCAGGTAGATCATCGCCTACCTTTTGCGGGG
AGCACCGTGCTCGCACGAGCCCCAACTACCAGGACACCAAGAGGGCTCGT
GGACTGCACAGCGGGAACGACAGCTCCCCCCCCCCCCCTTTTTTATTTCT
CGTGAGCTGCCTTATGGACGGTGGGGTGTATAAAGCTCGTGGACTGCACA
GCGGGAACGACAGCCCCCCCCCCCCCCTTTTTTATTTCTCGTGAGCTGCC
TTATGGACGTTTGGGTTTATAAAGGAATTAGAATGGAGATGGGTTTATGC
AGAGAATATACTGGAAGCGTTCTTCCATGAAGACGCAGGAGGGGATGGAG
ATCAAACGTCCCCTGTTTCAAGTATATAGGAATTAGAGTCCCCCCCTGAT
TGTAGCCTTACGGGAGTTTGGGGCTGTTGTTCCTGCTGTGCAATCCACGA
GCCCTCTTGAGGACACAAGCAGGGGGCACCCGCTGTAGCCGTTGGGAACT
GCTGCTGGTTGTTTGAAATTGAAGGCAAGAGGGTCAAAATGCCGCGCGAG
GGACACATTCCACGCTTTTTTCTTGTGGCTGGTGCTCAGACAGGTGACCC
TTCTCGCATTGGAGGGGTCAGCATTGTTCTAGTGGTCGTCAGCGTTATAC
GATGTCAAACCGCGTGTGTGCCCTGTCTCGCTCTCGTACGTGTAGGTTGA
CCTAAAGCTGTGAGATCCTTCGTGAAAAAATGTGTTGGACCCAAAACTGC
TTTGAGGAACGTCTGGGTTGGAAGGGCCACCCTGATTTTTTGTCCGGAGT
TCTTGCGAGGTTTATCAGACCTCTTCTCAGGGATCCCGACACCCAGCCGA
AATAACCAGGAACGCCAAGTTTGGATTGGCTTCTTACACATGGCGACACA
TTCTTCCCGTTTTGCGTTCTCGTATGCAACGCGTCACAGGAACCACAAGC
AGGGCGACACCCGGTCTAACGAGTCACTCATCACCTCCACGTCCTCACGG
AGAACGTCTTCCTGGAATGATCGCTTCGACGGCTACTATGAGGGATGGGA
CAAAAATAACCGGGCTTATGCCAAACCTACAAAATCATTTCACTCCTGAC
GAAAGGGAGGCGCTCATGTCCTTTCACCGCTTGTCACAGCCGCCCGGGTC
TCGATGGAGACGCAGTGCAGGATGGGGCTCCTCACGTGAATCCTGGAGTG
GCGTTACTGTGGAATATTCTCGGTTTTACGTGACTGCGATTGCATTGCCC
GACAACAATCTGGCGGGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1262:12978..25345-

>mRNA_H-canaliculatus_F_contig1262.2199.1 ID=mRNA_H-canaliculatus_F_contig1262.2199.1|Name=mRNA_H-canaliculatus_F_contig1262.2199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1262:12978..25345- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCGCTGGAGGCCGCGTCTAGCGTTTTCTCGGGAAATGTGAGACT
CGGCAACAGCCTGATGAGGCTGAAGACGACCATGGAGAGAGCGCGCCAAC
TTGTGGAGATGGGCTCGCTGGAGGCCGCGTCTAGCGTTTTCTCGGGAAAT
GTGAGACTCGGCAACAGCCTGATGAGGCTGAAGACGACCATGGAGAGAGC
GCGCCAACTTGTGGAGTCCTGCCAAAATCCCCGGTCATATTTAGGGCGAA
TGACGGCTCTCCCAGGAGCCAATGACAAAAAGGGACAGCTGGTGGAGGTA
GAAGCAGAGCTCCAGCGGATCATGGACGGCCTGATAATACCAATGCTAAC
CGACATCCGGAGGCACCAACAAGGGAATGACCCCGGAGGCGGAGAAAGAA
AAGAACCCGTCCTGCCAAAATCCCCGGTCATATTTAGGGCGAATGACGGC
TCTCCCAGGAGCCAATGACAAAAAGGGACAGCTGGTGGAGGTAGAAGCAG
AGCTCCAGCGGATCATGGACGGCCTGATAATACCAATGCTAACCGACATC
CGGAGGCACCAACAAGGGAATGACCCCGGAGGCGGAGAAAGAAAAGAACC
CGGAACCACAAGCAGGGCGACACCCGGTCTAACGAGTCACTCATCACCTC
CACGTCCTCACGGAGAACGTCTTCCTGGAATGATCGCTTCGACGGCTACT
ATGAGGGATGGGACAAAAATAACCGGGCTTATGCCAAACCTACAAAATCA
TTTCACTCCTGACGAAAGGGAGGCGCTCATGTCCTTTCACCGCTTGTCAC
AGCCGCCCGGGTCTCGATGGAGACGCAGTGCAGGATGGGGCTCCTCACGT
GAATCCTGGAGTGGCGTTACTGTGGAATATTCTCGGTTTTACGTGACTGC
GATTGCATTGCCCGACAACAATCTGGCGGGTGAACCACAAGCAGGGCGAC
ACCCGGTCTAACGAGTCACTCATCACCTCCACGTCCTCACGGAGAACGTC
TTCCTGGAATGATCGCTTCGACGGCTACTATGAGGGATGGGACAAAAATA
ACCGGGCTTATGCCAAACCTACAAAATCATTTCACTCCTGACGAAAGGGA
GGCGCTCATGTCCTTTCACCGCTTGTCACAGCCGCCCGGGTCTCGATGGA
GACGCAGTGCAGGATGGGGCTCCTCACGTGAATCCTGGAGTGGCGTTACT
GTGGAATATTCTCGGTTTTACGTGACTGCGATTGCATTGCCCGACAACAA
TCTGGCGGGT
back to top