mRNA_H-canaliculatus_F_contig1262.2198.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1262.2198.1
Unique NamemRNA_H-canaliculatus_F_contig1262.2198.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1262.2198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1262contigH-canaliculatus_F_contig1262:9696..11392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size225
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1262.2198.1prot_H-canaliculatus_F_contig1262.2198.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1262 9696..11392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.119025-CDS-H-canaliculatus_F_contig1262:9695..97751622928982.119025-CDS-H-canaliculatus_F_contig1262:9695..9775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 9696..9775 -
1696845637.801482-CDS-H-canaliculatus_F_contig1262:9695..97751696845637.801482-CDS-H-canaliculatus_F_contig1262:9695..9775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 9696..9775 -
1622928982.1508024-CDS-H-canaliculatus_F_contig1262:10574..106461622928982.1508024-CDS-H-canaliculatus_F_contig1262:10574..10646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 10575..10646 -
1696845637.81107-CDS-H-canaliculatus_F_contig1262:10574..106461696845637.81107-CDS-H-canaliculatus_F_contig1262:10574..10646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 10575..10646 -
1622928982.1645155-CDS-H-canaliculatus_F_contig1262:11319..113921622928982.1645155-CDS-H-canaliculatus_F_contig1262:11319..11392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 11320..11392 -
1696845637.8203902-CDS-H-canaliculatus_F_contig1262:11319..113921696845637.8203902-CDS-H-canaliculatus_F_contig1262:11319..11392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1262 11320..11392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1262.2198.1

>prot_H-canaliculatus_F_contig1262.2198.1 ID=prot_H-canaliculatus_F_contig1262.2198.1|Name=mRNA_H-canaliculatus_F_contig1262.2198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
GSIPKEIGKLTALTCLNLDSNKFSGSIPKELGGLTALKFLILSDNSLSGS
IPRELGRLSALEELHLDGNRFSGE*
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mRNA from alignment at H-canaliculatus_F_contig1262:9696..11392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1262.2198.1 ID=mRNA_H-canaliculatus_F_contig1262.2198.1|Name=mRNA_H-canaliculatus_F_contig1262.2198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1697bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1262:9696..11392- (Hapterophycus canaliculatus Oshoro5f female)
GGTTCGATTCCTAAGGAGATAGGCAAACTAACTGCCCTTACGTGCCTTAA
TCTGGACTCGAACAAATTCAGCGGTGAGTGATGGGGTAGTGGCTCTCCTC
CCCCCAACTCTAAAGTTAAGCCACTCGCTGCCAAGAACGTATTCCAATCT
CTGGCCTTCTTATCTAGTTGCTCATTCCCGGATGAGGCCAAAAACGCATT
CCAAACCTAGGGTAGTCTAGATACAGTTGTCACCAAGATTTTGATTGACG
AAATTTCTACCAAATGCAGTGGAACAAAAAAGGACGTTAGCCCCCCCAAA
ACCGCAACCGAGCCCACCGCCCCCCACTTGTCTCGCGAGCCCAAGGAAAG
ATAGGTACACAGATAAAGATAATGGGAAATCAACCTACGAGAAAATCATA
CTGCACATTTATCCCCCCCGCAGAAATCATATATTCACACAACGACGAAT
TCTCCGCCTCGGGGGGAAACCAGTTCCTCCCCTTAGAGGCACCAGGCAGT
AACACGTAGATGCAAAACCTCCGATGTTATGGCAGTCGCGTGCAACCTAC
GGGCATAATGGCGGTTGGCACTTGATAGAGAATGAGTCCGGGATGTTTAA
TTTTTTCGATTCAACAGCGTCAGCACGATCTAAACCGCGAAAAGGTTCTC
CACCCCATATCTCCTGTTAACTGGAACTCCCACTGATGACATTGTGTTGC
TCGCATGCCGCGAATGGGTTTGACATTTTGCTGCTGTTGCCTGCAGGTTC
GATTCCCAAGGAGCTTGGCGGGTTGACGGCTCTGAAGTTTCTGATCCTCA
GTGATAACTCCCTCAGCGGTAAGAGATCGAGATGAACAGGTCTTCATCCC
AACCCCGCGTGCGCGTCTTCGGTCTCCCCGGGTCTCTTCTGGCCGTTCAT
TCCCGGCCCAGAAGGCCTAGAATGAAATGTTGCTCTTGTTATGAAAACGT
CGGGGCCTCTCTCTCGCACAGGTCTCGGTGGCGCTGATGTTTATCCTACA
ACGATTCCACTGCCGTCAAAGCTTTGTCGCGCCATGGTTAATCGAACCAG
ACAGAGGTCGTTACCTCCAGCACGCAACAGAGCTCGCTAATCGCTCCCAC
TTGGTACGCAAGACCAAGATCAACTTGTTGAAAAGAAGATAATAAACGAG
GTAACTAAAACCGCATGATGGCTCTGTCGCCGTCCTACGGTAGTCTGAAG
AACACGCACCCCCGCGTTTGCACGGTTGATGTCATTCTGTGCGGGGGTTC
AAGATAATTTGACAAGGGGTGTATCATGAGCGTTGTTAAAAGGTGCCAGA
AGTCGGTGTGCTGGAGAGTATACAGGACTGGAAAGCCTCGGGCGCCCGGT
CACTTTGCCCGAACACCGCTCGGTATCGTTTTTCGCGCGAGTTCCAAGCA
CCTGCTCCAATCAAGTTCGTTCCTTGATCTCGCCCAACCCTGGCCTGCCG
CGGGCACACATTCCACGGATCCTTTCTGTCGCGCTTCAACGTGTACCCAA
TGCTCAGATATCACGCCAACGAGAAATAATACCGCCGCCTTTGCTCTCTT
CTGTTTTCATTTACTGTGGAAACCTTAATGAATTTTGGTTTGCCTTTGGG
CGTCTCGCTGTCTATAGGTTCGATCCCGAGGGAGCTCGGGCGACTGTCGG
CTCTCGAGGAGCTACACCTCGATGGTAACAGGTTCAGTGGTGAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1262:9696..11392-

>mRNA_H-canaliculatus_F_contig1262.2198.1 ID=mRNA_H-canaliculatus_F_contig1262.2198.1|Name=mRNA_H-canaliculatus_F_contig1262.2198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1262:9696..11392- (Hapterophycus canaliculatus Oshoro5f female)
GGTTCGATTCCTAAGGAGATAGGCAAACTAACTGCCCTTACGTGCCTTAA
TCTGGACTCGAACAAATTCAGCGGGTTCGATTCCTAAGGAGATAGGCAAA
CTAACTGCCCTTACGTGCCTTAATCTGGACTCGAACAAATTCAGCGGTTC
GATTCCCAAGGAGCTTGGCGGGTTGACGGCTCTGAAGTTTCTGATCCTCA
GTGATAACTCCCTCAGCGGTTCGATTCCCAAGGAGCTTGGCGGGTTGACG
GCTCTGAAGTTTCTGATCCTCAGTGATAACTCCCTCAGCGGTTCGATCCC
GAGGGAGCTCGGGCGACTGTCGGCTCTCGAGGAGCTACACCTCGATGGTA
ACAGGTTCAGTGGTGAGTAGGTTCGATCCCGAGGGAGCTCGGGCGACTGT
CGGCTCTCGAGGAGCTACACCTCGATGGTAACAGGTTCAGTGGTGAGTAG
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