mRNA_H-canaliculatus_F_contig12602.2185.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12602.2185.1
Unique NamemRNA_H-canaliculatus_F_contig12602.2185.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12602.2185.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 8.520e-58
Identity = 143/220 (65.00%), Postives = 159/220 (72.27%), Query Frame = 1 
Query:    1 GCLHRVEYGGSGHRNQPCVERWCRTKAAQRDGEKTDKA-KRMRAMTDGG-GAGTKRPLEPNSGRDYEGR----DFPADQGKRFRRRIAKVGGVSAIAEGRRTPTAVPPGP---GGDYSGLSFVFAGEGQGGDGGSAPPRANHEAVHVATESAAIVLSA---GLVGXXXXXXXXTKTRPSSRSRRSALKDLLGKGYRCLALLEELGALPLLKSAADVVRGG 624
            GC HRVEYGGSG RNQPCV+RWCRTKAAQR+ +K DKA +R RAM  GG G GTKRPLE +SG DYEG     D  AD  KRFRRR  K  G +A A GR +PT  P GP   GGDYSGLS+VFAGE         P R NHEA HV+ ESA IVLSA   G+  XXXXXXXX + RPSSRSRRS LK+LLGKGYRCLALLEELGA PLL +A +V++ G
Sbjct:  943 GCQHRVEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLE-SSGEDYEGDYGGGDVYAD--KRFRRRTTK--GTAAAAAGRTSPT--PTGPAVSGGDYSGLSYVFAGEXXXXXXXXLP-RPNHEAAHVSAESAGIVLSAVGGGVXXXXXXXXXXXRARPSSRSRRSGLKNLLGKGYRCLALLEELGARPLLSAAGEVLQEG 1154
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BLAST of mRNA_H-canaliculatus_F_contig12602.2185.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.040e-50
Identity = 132/224 (58.93%), Postives = 144/224 (64.29%), Query Frame = 1 
Query:    1 GCLHRVEYGGSGHRNQPCVERWCRTKAAQRDGEKTDKA-KRMRAMTDGG-GAGTKRPLEPNSGRDYEGR----DFPADQGKRFRRRIAKVGGVSAIAEGRRTPTAVPPGP------GGDYSGLSFVFAGEGQGGDGGSAPPRANHEAVHVATESAAIVLSA--GLVGXXXXXXXXT--KTRPSSRSRRSALKDLLGKGYRCLALLEELGALPLLKSAADVVRGG 624
            GC HR+EYGGSG RNQPCV+RWCRTKAAQR+ +K DKA +R RAM  GG G GTKRPLE  SG DYEG     D  AD  KRFRRR  K  G +A                     GGDYSGLS+VFAGE         P R NHEA HV  ESA IVLSA  G VG     XXX   + RPSSRSRRS LKDLLGKGYRCLALLEELGA PLL +A +V++ G
Sbjct:  590 GCQHRIEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLEA-SGEDYEGDYGGGDVFAD--KRFRRRTPK--GTAAXXXXXXXXXXXXXXXXXXXVSGGDYSGLSYVFAGEXXXXXXXGLP-RPNHEAAHVLAESAGIVLSAVGGGVGGASSSXXXXXXRARPSSRSRRSGLKDLLGKGYRCLALLEELGARPLLSAAGEVLQEG 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12602.2185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE8.520e-5865.00CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI2.040e-5058.93CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12602contigH-canaliculatus_F_contig12602:1206..3291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue1.8e-45
Seed eggNOG ortholog2880.D7G6J0
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size700
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12602.2185.1prot_H-canaliculatus_F_contig12602.2185.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12602 1208..3291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.5943534-CDS-H-canaliculatus_F_contig12602:1207..14921622928980.5943534-CDS-H-canaliculatus_F_contig12602:1207..1492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 1208..1492 -
1696845637.1448915-CDS-H-canaliculatus_F_contig12602:1207..14921696845637.1448915-CDS-H-canaliculatus_F_contig12602:1207..1492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 1208..1492 -
1622928980.6121886-CDS-H-canaliculatus_F_contig12602:2251..24861622928980.6121886-CDS-H-canaliculatus_F_contig12602:2251..2486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 2252..2486 -
1696845637.1596284-CDS-H-canaliculatus_F_contig12602:2251..24861696845637.1596284-CDS-H-canaliculatus_F_contig12602:2251..2486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 2252..2486 -
1622928980.627439-CDS-H-canaliculatus_F_contig12602:3115..32911622928980.627439-CDS-H-canaliculatus_F_contig12602:3115..3291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 3116..3291 -
1696845637.170478-CDS-H-canaliculatus_F_contig12602:3115..32911696845637.170478-CDS-H-canaliculatus_F_contig12602:3115..3291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12602 3116..3291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12602.2185.1

>prot_H-canaliculatus_F_contig12602.2185.1 ID=prot_H-canaliculatus_F_contig12602.2185.1|Name=mRNA_H-canaliculatus_F_contig12602.2185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=232bp
GCLHRVEYGGSGHRNQPCVERWCRTKAAQRDGEKTDKAKRMRAMTDGGGA
GTKRPLEPNSGRDYEGRDFPADQGKRFRRRIAKVGGVSAIAEGRRTPTAV
PPGPGGDYSGLSFVFAGEGQGGDGGSAPPRANHEAVHVATESAAIVLSAG
LVGGGGGGSSSTKTRPSSRSRRSALKDLLGKGYRCLALLEELGALPLLKS
AADVVRGGEVEGKKEGHATGRGGGGKDKGKCK
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mRNA from alignment at H-canaliculatus_F_contig12602:1206..3291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12602.2185.1 ID=mRNA_H-canaliculatus_F_contig12602.2185.1|Name=mRNA_H-canaliculatus_F_contig12602.2185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12602:1206..3291- (Hapterophycus canaliculatus Oshoro5f female)
GGCTGCTTGCACCGCGTTGAATACGGGGGGTCCGGGCACCGTAACCAGCC
CTGCGTCGAACGGTGGTGCCGCACAAAGGCTGCCCAGCGAGATGGGGAGA
AGACTGACAAGGCGAAGAGGATGAGGGCCATGACCGACGGGGGGGGGGCG
GGCACGAAGCGTCCCCTGGAGCCGAAGTGAGTTGCGGTTGGTGTTGTTGC
TGTTGGTGTCGCTGTTCTCTGTTTTCTCTTGTTGTGGATGTTGTCGTTAC
TCACCCGCCTCTCACCTTGAAGGCAGGCCGAACGTTCGTGTTCCCGTTCG
TGTTCCCGTTCGTGACGCATCTACCTGTATTGCGCCAGCGGCGGCGTCAC
TAACCGCGGCTGGATCCTAGATAGCCATCCACGCCCCCCGCCGGCGACAG
TGATGAAGGGGGAGTCGTAGTGCCGACTCCAAGTCCGACCTCCACTTTTT
TATCGACTACCGTTTGCCCAATTGTTTGAGCAGATAAAAAGTAGTTCCAA
CAAATCGATGCGGCAATCGAGGCATTATCCCACCGTCCTTCGATGCACCG
AGCACCATAAGATCTGCCCTTTTCTTTCTTCGTCTGTCTGCTAGACTAGA
GGGTGCGCGGTCAACGGTCAAGCCAACGAACGCCGAGACAAATGACACCC
CCCACCCCACCCCCCCACCCCCCCCCCCCCACACCGCCCNNNNNNNNNNG
GGGCGCGGGCAAGGCACACGAAAAACGACGCCCGCGCCAACGCCCCCCCC
CCCCCCCCCCCCTTCCCTACAATCCGTACCGCTCCCACGCCGCGTTAAAC
CCCAGCAGCGGGAGAGACTACGAGGGACGCGACTTCCCCGCAGACCAAGG
CAAGCGCTTCCGCCGTCGCATCGCCAAGGTCGGAGGCGTTTCCGCCATAG
CGGAGGGAAGGAGAACCCCCACCGCGGTGCCCCCGGGCCCCGGGGGAGAC
TACAGCGGACTCTCGTTCGTGTTCGCGGGGGAGGGCCAGGGTGGCGACGG
CGGGTCGGCTCCTCCGCGAGCGAATCACGAAGCCGTCCACGTGAGTTGCT
TCTTTCGCTTCCTTCCTTCGCTTCCTTTACTTCCTTTACTTCCTTTACCT
CCTTCCTCCAACCGCTTGGCGTATCTGCTCTGCTTGCTCTGCTTCTCGAT
CGCTTGTTGTTGTGTTTTATCGTTGCTTCGTTGCTTGCTTCGCGGCCTCT
TGTCCGCCGTTTTACCGTTGCTTGCTGATTGGCTGTTCGATTTTTTCTTT
TCTCTTTGCCGCTTTCGTGCCATCGCACCGCCATCCCCGACGCGCGGGTC
ACAGCCAGGCTTGAGTTCGGGTGGCGTGGTTTCGGCGAGCCACGCCTCTC
CTCTCGTCCATCCCTACAGCAGTTATTCATTGCACGTGATGATGGTGTCT
CGATGATGGTGTCTCGATGATGGTGTCTCGATGATGGTGTCTCGATGATG
GTGTCTCGCTTTCCTTTATCGTAGCACCACATCTTGCTGTCCATGGCCTC
GGGTTAAACCTTGATGGTGCTGTAGTTGACAGCGGGGGTCGTGGGGTCGC
CCGGGGGGGGAGGGGAGGAGGACCTGTCCTCGATGAAGTTGTCGCGCGAG
CCATCCGTCACCTTCCGCCTTTCCTCTCATCTTGAAGCTCTTGCCCAAAC
CCCTCTTCCATCCCGAAGCCCTCGAATGCGCCTCTTCCTGCGGCAACCAC
ACAGCCCTCCCCTCCCTCAGCCCCCCGACTCTCAAGCCAAAACACGATCA
AAAGCGCATGCGTGTCTTCGACCACTGCTGCGTGTCGCCACGATCGCAGG
TGGCGACCGAATCGGCCGCGATCGTCCTCTCCGCGGGGCTCGTCGGCGGG
GGCGGCGGCGGCAGCAGCAGCACCAAGACGCGCCCCTCCAGCCGGTCCCG
CCGGTCCGCCCTCAAGGACCTCCTGGGGAAAGGGTACCGCTGCCTGGCGC
TGCTCGAAGAGCTCGGCGCCCTGCCCCTGCTGAAGTCCGCGGCGGACGTT
GTCAGGGGAGGAGAGGTGGAGGGGAAGAAGGAGGGTCACGCGACGGGAAG
GGGGGGCGGCGGAAAGGACAAGGGCAAGTGCAAGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12602:1206..3291-

>mRNA_H-canaliculatus_F_contig12602.2185.1 ID=mRNA_H-canaliculatus_F_contig12602.2185.1|Name=mRNA_H-canaliculatus_F_contig12602.2185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12602:1206..3291- (Hapterophycus canaliculatus Oshoro5f female)
GGCTGCTTGCACCGCGTTGAATACGGGGGGTCCGGGCACCGTAACCAGCC
CTGCGTCGAACGGTGGTGCCGCACAAAGGCTGCCCAGCGAGATGGGGAGA
AGACTGACAAGGCGAAGAGGATGAGGGCCATGACCGACGGGGGGGGGGCG
GGCACGAAGCGTCCCCTGGAGCCGAAGGCTGCTTGCACCGCGTTGAATAC
GGGGGGTCCGGGCACCGTAACCAGCCCTGCGTCGAACGGTGGTGCCGCAC
AAAGGCTGCCCAGCGAGATGGGGAGAAGACTGACAAGGCGAAGAGGATGA
GGGCCATGACCGACGGGGGGGGGGCGGGCACGAAGCGTCCCCTGGAGCCG
AACAGCGGGAGAGACTACGAGGGACGCGACTTCCCCGCAGACCAAGGCAA
GCGCTTCCGCCGTCGCATCGCCAAGGTCGGAGGCGTTTCCGCCATAGCGG
AGGGAAGGAGAACCCCCACCGCGGTGCCCCCGGGCCCCGGGGGAGACTAC
AGCGGACTCTCGTTCGTGTTCGCGGGGGAGGGCCAGGGTGGCGACGGCGG
GTCGGCTCCTCCGCGAGCGAATCACGAAGCCGTCCACCAGCGGGAGAGAC
TACGAGGGACGCGACTTCCCCGCAGACCAAGGCAAGCGCTTCCGCCGTCG
CATCGCCAAGGTCGGAGGCGTTTCCGCCATAGCGGAGGGAAGGAGAACCC
CCACCGCGGTGCCCCCGGGCCCCGGGGGAGACTACAGCGGACTCTCGTTC
GTGTTCGCGGGGGAGGGCCAGGGTGGCGACGGCGGGTCGGCTCCTCCGCG
AGCGAATCACGAAGCCGTCCACGTGGCGACCGAATCGGCCGCGATCGTCC
TCTCCGCGGGGCTCGTCGGCGGGGGCGGCGGCGGCAGCAGCAGCACCAAG
ACGCGCCCCTCCAGCCGGTCCCGCCGGTCCGCCCTCAAGGACCTCCTGGG
GAAAGGGTACCGCTGCCTGGCGCTGCTCGAAGAGCTCGGCGCCCTGCCCC
TGCTGAAGTCCGCGGCGGACGTTGTCAGGGGAGGAGAGGTGGAGGGGAAG
AAGGAGGGTCACGCGACGGGAAGGGGGGGCGGCGGAAAGGACAAGGGCAA
GTGCAAGGTGGCGACCGAATCGGCCGCGATCGTCCTCTCCGCGGGGCTCG
TCGGCGGGGGCGGCGGCGGCAGCAGCAGCACCAAGACGCGCCCCTCCAGC
CGGTCCCGCCGGTCCGCCCTCAAGGACCTCCTGGGGAAAGGGTACCGCTG
CCTGGCGCTGCTCGAAGAGCTCGGCGCCCTGCCCCTGCTGAAGTCCGCGG
CGGACGTTGTCAGGGGAGGAGAGGTGGAGGGGAAGAAGGAGGGTCACGCG
ACGGGAAGGGGGGGCGGCGGAAAGGACAAGGGCAAGTGCAAG
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