mRNA_H-canaliculatus_F_contig126.2178.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig126.2178.1
Unique NamemRNA_H-canaliculatus_F_contig126.2178.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: D8LE37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE37_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.910e-34
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 RSTEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            RSTEFTDDEIS AFKFLDLD+NLHIGAAEIRHILICMGELITDEEVDMMI+MVDSDGDGQVS+EEFHRLV
Sbjct:  711 RSTEFTDDEISAAFKFLDLDRNLHIGAAEIRHILICMGELITDEEVDMMISMVDSDGDGQVSFEEFHRLV 780
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BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: F0XXY1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXY1_AURAN)

HSP 1 Score: 108 bits (271), Expect = 1.650e-29
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 RSTEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            R+TEF+D EI  AFKF+DLD+N +IGA+EIRH+L+CMGELITDEEVDMMI MVD+DGDGQVSY EF+ +V
Sbjct:   25 RTTEFSDAEIEAAFKFIDLDKNGYIGASEIRHVLVCMGELITDEEVDMMIKMVDNDGDGQVSYHEFYDVV 94
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BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A6A5ASX8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASX8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.230e-26
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 TEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            +EF++D++  AFKF+DLD+N  IGAAEIRHILICMGELITD EVD M+ MVD DGDGQVS+EEF +LV
Sbjct:   49 SEFSEDDVLGAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDEMVRMVDRDGDGQVSFEEFRKLV 116
[Close]
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A7S2FW97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW97_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.480e-26
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 RSTEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            +STEF+D EI  AF+F+DLD+N  IGAAEIRHILICMGELITDEEVDMMI M+D DGDGQVSY EF+ LV
Sbjct:  487 KSTEFSDAEIEAAFRFIDLDKNGFIGAAEIRHILICMGELITDEEVDMMIGMIDGDGDGQVSYREFYSLV 556
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BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A1V9YHN9_9STRA (Calmodulin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHN9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.950e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 STEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            ++EF++ EI +AFKF+DLD+N  IGAAEIRHILICMGELITD EVDMM+ MVD DGDGQ+S+EEF ++V
Sbjct:   48 TSEFSEAEILSAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDMMVKMVDRDGDGQISFEEFRKMV 116
[Close]
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A5D6XRG4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRG4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.880e-24
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 RSTEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            RS EFT++EI  AF+FLDLD+N  IGAAE+RH+LICMGELITDEE+DMM+ + D+DGDGQVS++EF R+V
Sbjct:  534 RSGEFTEEEILGAFRFLDLDRNNFIGAAELRHLLICMGELITDEEIDMMVKLCDTDGDGQVSFDEFRRMV 603
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BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: T0QC60_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QC60_SAPDV)

HSP 1 Score: 104 bits (259), Expect = 1.880e-24
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 STEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            ++EF++ EI +AFKF+DLD+N  IGAAEIRHILICMGELITD EVDMM+ MVD DGDGQVS+EEF +LV
Sbjct:  604 TSEFSEAEILSAFKFIDLDKNAFIGAAEIRHILICMGELITDAEVDMMVKMVDRDGDGQVSFEEFRKLV 672
[Close]
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A1V9Z6C2_9STRA (Calmodulin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6C2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.490e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 STEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            ++EF++ EI +AFKF+DLD+N  IGAAEIRHILICMGELITD EVDMM+ MVD DGDGQVS+EEF ++V
Sbjct:  462 TSEFSEAEILSAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDMMVKMVDRDGDGQVSFEEFRKMV 530
[Close]
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A067CJW1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJW1_SAPPC)

HSP 1 Score: 103 bits (257), Expect = 3.510e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 STEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            ++EF++ EI +AFKF+DLD+N  +GAAEIRHILICMGELITD EVDMM+ MVD DGDGQVS+EEF +LV
Sbjct:  674 TSEFSEAEILSAFKFIDLDKNSFVGAAEIRHILICMGELITDAEVDMMVKMVDRDGDGQVSFEEFRKLV 742
[Close]
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Match: A0A024UIF3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIF3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.950e-24
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    4 STEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMITMVDSDGDGQVSYEEFHRLV 210
            ++EF++D+I  AFKF+DLD+N  IGAAEIRHILICMGELITD EVD M+ MVD DGDGQVS+EEF +LV
Sbjct:  801 TSEFSEDDILHAFKFIDLDKNTFIGAAEIRHILICMGELITDAEVDEMVRMVDRDGDGQVSFEEFRKLV 869
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig126.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE37_ECTSI1.910e-3494.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XXY1_AURAN1.650e-2974.29Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6A5ASX8_9STRA4.230e-2672.06Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2FW97_9STRA4.480e-2677.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9YHN9_9STRA5.950e-2571.01Calmodulin n=1 Tax=Thraustotheca clavata TaxID=745... [more]
A0A5D6XRG4_9STRA1.880e-2470.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T0QC60_SAPDV1.880e-2473.91Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z6C2_9STRA3.490e-2472.46Calmodulin-like protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CJW1_SAPPC3.510e-2472.46Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024UIF3_9STRA8.950e-2472.46Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig126contigH-canaliculatus_F_contig126:2762..3670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D8LE37
KEGG koko:K02183,ko:K19909,ko:K19938
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.7141347-CDS-H-canaliculatus_F_contig126:2761..28961622928978.7141347-CDS-H-canaliculatus_F_contig126:2761..2896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 2762..2896 +
1696845636.1448889-CDS-H-canaliculatus_F_contig126:2761..28961696845636.1448889-CDS-H-canaliculatus_F_contig126:2761..2896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 2762..2896 +
1622928978.7298393-CDS-H-canaliculatus_F_contig126:3595..36701622928978.7298393-CDS-H-canaliculatus_F_contig126:3595..3670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 3596..3670 +
1696845636.157422-CDS-H-canaliculatus_F_contig126:3595..36701696845636.157422-CDS-H-canaliculatus_F_contig126:3595..3670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 3596..3670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig126.2178.1prot_H-canaliculatus_F_contig126.2178.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig126 2762..3670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig126.2178.1

>prot_H-canaliculatus_F_contig126.2178.1 ID=prot_H-canaliculatus_F_contig126.2178.1|Name=mRNA_H-canaliculatus_F_contig126.2178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
RSTEFTDDEISTAFKFLDLDQNLHIGAAEIRHILICMGELITDEEVDMMI
TMVDSDGDGQVSYEEFHRLV
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mRNA from alignment at H-canaliculatus_F_contig126:2762..3670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig126.2178.1 ID=mRNA_H-canaliculatus_F_contig126.2178.1|Name=mRNA_H-canaliculatus_F_contig126.2178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=909bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:2762..3670+ (Hapterophycus canaliculatus Oshoro5f female)
AGATCGACAGAGTTCACCGATGACGAGATCTCGACTGCCTTCAAGTTTCT
GGATCTAGACCAAAATTTACACATCGGGGCCGCCGAGATAAGGCATATTT
TGATCTGCATGGGGGAGCTCATCACAGACGAAGAGGTATTAGTCTACCGC
TGCTGTTGTTCACGATGTCAGTGCCCGTCGAGGGCGTTGATTCATCGGCG
ATATACGTGTTCATCGATCTTGACCACCGCGTTTCTAGCGGGGGGAGGGA
AGTCTACACAAGGCACCGCCGATAACGGATGCTTAGTCTGTGCGTACATG
TGTTCCATTATTTGTGTTGCTGACCGAGCGTTGATTTCTCAAAGCTTGAC
ACGTATTTGAAGAACAATTCGGAGGATGTGGCTGGACCATGGCTGTTTTC
ATCTGTTCGCTTTGCTCACTCGATAAGACATGGCAGCACAATAAATACGC
AAGCTAGCCCTTTACGTTCGTGCTCGACGGTTATCATCTGTCTCAAGTCT
CTCTCCTTTCCGGGTTGTGACAACACGACGGAAGTAAACTATAGAAGCGA
TGCCCGTATTCCTCCGCTCCTAAGTCCAGCTGCCGTTCTGGCTCTGTCCA
CGCCACGTCGCTGTTGACTTTCAGCATGAACCACATACATTGAAGCCAAG
CCTTACGTATGATAGACAAACCCAGACGCGTAGGGTTACTCACTGGGAAG
GAGTCACGCTCGGCGAAGGAGACGGGATAAGGTCTGGAGGAAACATTGTA
AAACACCTCGATCGACCATTACCGTGTAAAGCGCTCTTGAAAACGACGTA
CGATCCAAAGGAGTGTCTCTGTTCTTCTTTGCAGGTGGACATGATGATAA
CAATGGTAGACAGCGACGGAGACGGCCAGGTGAGCTACGAGGAGTTCCAC
CGCCTCGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig126:2762..3670+

>mRNA_H-canaliculatus_F_contig126.2178.1 ID=mRNA_H-canaliculatus_F_contig126.2178.1|Name=mRNA_H-canaliculatus_F_contig126.2178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:2762..3670+ (Hapterophycus canaliculatus Oshoro5f female)
AGATCGACAGAGTTCACCGATGACGAGATCTCGACTGCCTTCAAGTTTCT
GGATCTAGACCAAAATTTACACATCGGGGCCGCCGAGATAAGGCATATTT
TGATCTGCATGGGGGAGCTCATCACAGACGAAGAGAGATCGACAGAGTTC
ACCGATGACGAGATCTCGACTGCCTTCAAGTTTCTGGATCTAGACCAAAA
TTTACACATCGGGGCCGCCGAGATAAGGCATATTTTGATCTGCATGGGGG
AGCTCATCACAGACGAAGAGGTGGACATGATGATAACAATGGTAGACAGC
GACGGAGACGGCCAGGTGAGCTACGAGGAGTTCCACCGCCTCGTCGTGGA
CATGATGATAACAATGGTAGACAGCGACGGAGACGGCCAGGTGAGCTACG
AGGAGTTCCACCGCCTCGTC
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