mRNA_H-canaliculatus_F_contig12599.2177.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12599.2177.1
Unique NamemRNA_H-canaliculatus_F_contig12599.2177.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12599.2177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12599contigH-canaliculatus_F_contig12599:2603..3164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12599.2177.1prot_H-canaliculatus_F_contig12599.2177.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12599 2855..3157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.6122754-UTR-H-canaliculatus_F_contig12599:2602..28541622928978.6122754-UTR-H-canaliculatus_F_contig12599:2602..2854Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12599 2603..2854 +
1696845636.1108809-UTR-H-canaliculatus_F_contig12599:2602..28541696845636.1108809-UTR-H-canaliculatus_F_contig12599:2602..2854Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12599 2603..2854 +
1622928978.6433663-UTR-H-canaliculatus_F_contig12599:3157..31641622928978.6433663-UTR-H-canaliculatus_F_contig12599:3157..3164Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12599 3158..3164 +
1696845636.1326754-UTR-H-canaliculatus_F_contig12599:3157..31641696845636.1326754-UTR-H-canaliculatus_F_contig12599:3157..3164Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12599 3158..3164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.628006-CDS-H-canaliculatus_F_contig12599:2854..31571622928978.628006-CDS-H-canaliculatus_F_contig12599:2854..3157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12599 2855..3157 +
1696845636.121029-CDS-H-canaliculatus_F_contig12599:2854..31571696845636.121029-CDS-H-canaliculatus_F_contig12599:2854..3157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12599 2855..3157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12599.2177.1

>prot_H-canaliculatus_F_contig12599.2177.1 ID=prot_H-canaliculatus_F_contig12599.2177.1|Name=mRNA_H-canaliculatus_F_contig12599.2177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MITPAPLLHYFSCCRVPHHDGNSTNVFPPCHPEYLIHYSTTLLALKRHTT
TQHNRKESDKEGQHLPSLSPRAPPPPYLKEGSSTVKPGIPDPLLHYASRL
*
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mRNA from alignment at H-canaliculatus_F_contig12599:2603..3164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12599.2177.1 ID=mRNA_H-canaliculatus_F_contig12599.2177.1|Name=mRNA_H-canaliculatus_F_contig12599.2177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=562bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12599:2603..3164+ (Hapterophycus canaliculatus Oshoro5f female)
AGTTAATTGCCCGCATTCCACCCGCAACACCGGATCTCCTACTTCATTGC
CTATCTTCCCTTCTACAGCCATGCCATAACCGGGAGAAATGACAAGGCGT
CTGATCCACAACATTCTCTACTTCTCTGCCTTGCTTGCCGTTGAGAGCCA
CACCGCCGATGACCAAGGCTGAATTCATGGCCCCAATGCAACCCGCATTA
TCCTATTCCCTTCTCCACTACCTTTCCTGCCGTGAAGAGCGACACTGCGG
GGATGATTACACCTGCTCCATTGCTACACTACTTTAGTTGCTGTCGTGTG
CCCCACCACGACGGTAACTCAACGAACGTTTTTCCACCATGCCACCCAGA
ATACCTTATCCACTACTCCACTACGTTACTCGCTCTTAAGAGGCACACCA
CAACCCAACACAACAGGAAGGAGTCTGATAAAGAAGGACAACACCTACCT
AGCTTGTCGCCGCGCGCCCCACCACCACCGTACCTCAAGGAGGGTTCTTC
CACCGTGAAACCCGGGATACCTGACCCGCTACTCCACTATGCTTCTCGCC
TTTAAGAGTCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12599:2603..3164+

>mRNA_H-canaliculatus_F_contig12599.2177.1 ID=mRNA_H-canaliculatus_F_contig12599.2177.1|Name=mRNA_H-canaliculatus_F_contig12599.2177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12599:2603..3164+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTACACCTGCTCCATTGCTACACTACTTTAGTTGCTGTCGTGTGCC
CCACCACGACGGTAACTCAACGAACGTTTTTCCACCATGCCACCCAGAAT
ACCTTATCCACTACTCCACTACGTTACTCGCTCTTAAGAGGCACACCACA
ACCCAACACAACAGGAAGGAGTCTGATAAAGAAGGACAACACCTACCTAG
CTTGTCGCCGCGCGCCCCACCACCACCGTACCTCAAGGAGGGTTCTTCCA
CCGTGAAACCCGGGATACCTGACCCGCTACTCCACTATGCTTCTCGCCTT
TAAATGATTACACCTGCTCCATTGCTACACTACTTTAGTTGCTGTCGTGT
GCCCCACCACGACGGTAACTCAACGAACGTTTTTCCACCATGCCACCCAG
AATACCTTATCCACTACTCCACTACGTTACTCGCTCTTAAGAGGCACACC
ACAACCCAACACAACAGGAAGGAGTCTGATAAAGAAGGACAACACCTACC
TAGCTTGTCGCCGCGCGCCCCACCACCACCGTACCTCAAGGAGGGTTCTT
CCACCGTGAAACCCGGGATACCTGACCCGCTACTCCACTATGCTTCTCGC
CTTTAA
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