mRNA_H-canaliculatus_F_contig12598.2176.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12598.2176.1
Unique NamemRNA_H-canaliculatus_F_contig12598.2176.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: D8LGE6_ECTSI (Enkurin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.070e-26
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VPRRD+ PVTGIVSKANFVTANAVDTILAVPR V L PVNYLEKEDYGK+PKYLQQV+
Sbjct:  117 VPRRDDCPVTGIVSKANFVTANAVDTILAVPRRVDLEPVNYLEKEDYGKVPKYLQQVK 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A6H5LFQ2_9PHAE (Enkurin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFQ2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.290e-26
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VPRRD+ PVTGI SKANFVTANAVDTILAVPR V L PVNYLEKEDYGK+PKYLQQV+
Sbjct:  104 VPRRDDCPVTGIASKANFVTANAVDTILAVPRRVDLEPVNYLEKEDYGKVPKYLQQVK 161
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A7S0QE95_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QE95_9CRYP)

HSP 1 Score: 77.4 bits (189), Expect = 6.030e-16
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VP+RDE PV G++S+ N++TANAVD IL+VPR      VNYL+K+DYGK+P YL +V+
Sbjct:   89 VPKRDEKPVMGLISQKNYITANAVDNILSVPRKEVRKDVNYLQKQDYGKVPAYLDRVK 146
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A7S0QK60_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QK60_9CRYP)

HSP 1 Score: 76.6 bits (187), Expect = 7.730e-16
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VP+RDE PV G+VS+ NF+TANAVD ILAVP+      VNYL+K+DYGK P Y+ +VR
Sbjct:  104 VPKRDEKPVMGLVSQKNFITANAVDNILAVPKKPLSKDVNYLKKQDYGKTPAYMARVR 161
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: L1I594_GUITC (Enkurin domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I594_GUITC)

HSP 1 Score: 75.1 bits (183), Expect = 5.270e-15
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VP++DE PV G+VS+ N++TANAVD ILAVP+      VNYL+K+DYG++P YL +V+
Sbjct:   85 VPKKDEKPVMGLVSQKNYITANAVDNILAVPKKPVSKEVNYLQKQDYGQVPAYLSRVK 142
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: D7G0N0_ECTSI (Enkurin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 9.900e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VPRR E P  G+ S  NFVT+NAV+TILAVP     PP++YL+KED+G++P YL QV+
Sbjct:  126 VPRRGERPTMGLHSAKNFVTSNAVETILAVPANRRRPPIDYLKKEDFGRVPDYLAQVQ 183
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A7S1REH5_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1REH5_ALECA)

HSP 1 Score: 72.0 bits (175), Expect = 3.420e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VPR DE PV  +V+  NF+ ANAV+TILAVP+ V     +YL KEDYGK+PKYL  ++
Sbjct:   36 VPRHDEAPVMNLVTSKNFIVANAVETILAVPKKVTEGAKDYLNKEDYGKVPKYLTHIK 93
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A6U4UFZ2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4UFZ2_HEMAN)

HSP 1 Score: 72.8 bits (177), Expect = 7.850e-14
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VP RDE PV G+VS  N+VTANAVD ILAVP       V+YL+KEDYG++P YLQ V+
Sbjct:   94 VPSRDEKPVFGLVSHKNYVTANAVDNILAVPPPRPAGEVSYLQKEDYGQVPAYLQGVK 151
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A7S0VYR4_9CRYP (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VYR4_9CRYP)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYLQQVR 174
            VP R + PV G+VS+ NFVTANAVD ILAVP+      +NYL+K DYG++P+Y+ +VR
Sbjct:   83 VPNRADKPVMGLVSQKNFVTANAVDNILAVPKRPISNEINYLQKADYGQVPQYIDRVR 140
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Match: A0A5B8MPW2_9CHLO (Enkurin n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MPW2_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 2.330e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKIPKYL 162
            VP+R E PV G+VS  NF+TANAV+ IL+VPR V   PV Y +K DYGKIP YL
Sbjct:   91 VPKRSERPVMGLVSAKNFITANAVENILSVPRKVNNEPVLYTKKADYGKIPVYL 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12598.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE6_ECTSI2.070e-2687.93Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LFQ2_9PHAE6.290e-2686.21Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S0QE95_9CRYP6.030e-1658.62Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0QK60_9CRYP7.730e-1662.07Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1I594_GUITC5.270e-1556.90Enkurin domain-containing protein n=1 Tax=Guillard... [more]
D7G0N0_ECTSI9.900e-1558.62Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1REH5_ALECA3.420e-1456.90Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6U4UFZ2_HEMAN7.850e-1462.07Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VYR4_9CRYP1.020e-1356.90Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A5B8MPW2_9CHLO2.330e-1362.96Enkurin n=1 Tax=Chloropicon primus TaxID=1764295 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12598contigH-canaliculatus_F_contig12598:1617..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D8LGE6
Preferred nameENKUR
GOsGO:0001669,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0012505,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0036126,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0097223,GO:0097228,GO:0097708,GO:0097729,GO:0099503,GO:0120025,GO:0120038
EggNOG free text desc.Enkurin, TRPC channel interacting protein
EggNOG OGs28KS9@1,2QT8E@2759
Ec32 ortholog descriptionEnkurin
Ec32 orthologEc-16_003760.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.5569198-CDS-H-canaliculatus_F_contig12598:1616..17901622928978.5569198-CDS-H-canaliculatus_F_contig12598:1616..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12598 1617..1790 +
1696845636.0958939-CDS-H-canaliculatus_F_contig12598:1616..17901696845636.0958939-CDS-H-canaliculatus_F_contig12598:1616..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12598 1617..1790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12598.2176.1prot_H-canaliculatus_F_contig12598.2176.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12598 1617..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12598.2176.1

>prot_H-canaliculatus_F_contig12598.2176.1 ID=prot_H-canaliculatus_F_contig12598.2176.1|Name=mRNA_H-canaliculatus_F_contig12598.2176.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
VPRRDEYPVTGIVSKANFVTANAVDTILAVPRGVGLPPVNYLEKEDYGKI
PKYLQQVR
back to top

mRNA from alignment at H-canaliculatus_F_contig12598:1617..1790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12598.2176.1 ID=mRNA_H-canaliculatus_F_contig12598.2176.1|Name=mRNA_H-canaliculatus_F_contig12598.2176.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12598:1617..1790+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCCGCGACGAGACGAATATCCTGTGACCGGCATCGTCAGCAAGGCCAA
CTTCGTCACCGCGAACGCGGTCGACACTATCTTGGCGGTGCCTCGGGGCG
TGGGTCTACCGCCAGTTAACTATCTTGAGAAAGAGGACTACGGGAAGATC
CCGAAGTACCTGCAGCAGGTAAGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12598:1617..1790+

>mRNA_H-canaliculatus_F_contig12598.2176.1 ID=mRNA_H-canaliculatus_F_contig12598.2176.1|Name=mRNA_H-canaliculatus_F_contig12598.2176.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12598:1617..1790+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCCGCGACGAGACGAATATCCTGTGACCGGCATCGTCAGCAAGGCCAA
CTTCGTCACCGCGAACGCGGTCGACACTATCTTGGCGGTGCCTCGGGGCG
TGGGTCTACCGCCAGTTAACTATCTTGAGAAAGAGGACTACGGGAAGATC
CCGAAGTACCTGCAGCAGGTAAGAGTGCCGCGACGAGACGAATATCCTGT
GACCGGCATCGTCAGCAAGGCCAACTTCGTCACCGCGAACGCGGTCGACA
CTATCTTGGCGGTGCCTCGGGGCGTGGGTCTACCGCCAGTTAACTATCTT
GAGAAAGAGGACTACGGGAAGATCCCGAAGTACCTGCAGCAGGTAAGA
back to top