mRNA_H-canaliculatus_F_contig1259.2173.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1259.2173.1
Unique NamemRNA_H-canaliculatus_F_contig1259.2173.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1259.2173.1 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.240e-42
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 MNAEATVDNNFELFEAQRVEEVKDILEEFLRCELYYHCRALEMLAPALAHIGGVNADSARENMREEIEGMNKQLHYT 231
            MN EATVDNNFELFEAQRVEE+KDILEEFLRCELYYHCRALE+L PAL HIGGV+ +SARENMRE+IEGMNKQL YT
Sbjct:    1 MNTEATVDNNFELFEAQRVEEIKDILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77
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BLAST of mRNA_H-canaliculatus_F_contig1259.2173.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.970e-21
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    4 NAEATVDNNFELFEAQRVEEVKD------------------------------ILEEFLRCELYYHCRALEMLAPALAHIGGVNADSARENMREEIEGMNKQLHYT 231
            N E  VDNN ELFEAQRVE+VK+                              IL+EF+RCE+YYHCRALEMLAPAL H+ GV+ D A +N+R E+  +N +L+Y+
Sbjct:  153 NTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
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BLAST of mRNA_H-canaliculatus_F_contig1259.2173.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.110e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    4 NAEATVDNNFELFEAQRVEEVKDILEEFLRCELYYHCRALEMLAPALAHIGGVNADSARENMREEIEGMN 213
            + +  VD+NF  FE  RV E+K +LEE LR E+ YHCRALE+L P    +  ++ D A  +M +E++ +N
Sbjct:  159 HTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 228
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BLAST of mRNA_H-canaliculatus_F_contig1259.2173.1 vs. uniprot
Match: A0A4D9D8D0_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8D0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.990e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    4 NAEATVDNNFELFEAQRVEEVKDILEEFLRCELYYHCRALEMLAPALAHIGGVNADSARENMREEIEGMN 213
            + +  VD+NF  FE  RV E+K +LEE LR E+ YHCRALE+L P    +  ++ D A  +M +E++ +N
Sbjct:  406 HTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1259.2173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G989_ECTSI4.240e-4287.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA1.970e-2146.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TTF8_9STRA1.110e-942.86FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A4D9D8D0_9STRA1.990e-942.86Methionine aminopeptidase n=1 Tax=Nannochloropsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1259contigH-canaliculatus_F_contig1259:20166..21148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM92 protein
Ec32 orthologEc-00_011340.1
Exons3
Model size234
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1259.2173.1prot_H-canaliculatus_F_contig1259.2173.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1259 20166..21148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.4123077-CDS-H-canaliculatus_F_contig1259:20165..202341622928978.4123077-CDS-H-canaliculatus_F_contig1259:20165..20234Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 20166..20234 +
1696845636.0276437-CDS-H-canaliculatus_F_contig1259:20165..202341696845636.0276437-CDS-H-canaliculatus_F_contig1259:20165..20234Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 20166..20234 +
1622928978.435638-CDS-H-canaliculatus_F_contig1259:20439..205531622928978.435638-CDS-H-canaliculatus_F_contig1259:20439..20553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 20440..20553 +
1696845636.0388186-CDS-H-canaliculatus_F_contig1259:20439..205531696845636.0388186-CDS-H-canaliculatus_F_contig1259:20439..20553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 20440..20553 +
1622928978.4469626-CDS-H-canaliculatus_F_contig1259:21097..211481622928978.4469626-CDS-H-canaliculatus_F_contig1259:21097..21148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 21098..21148 +
1696845636.0504959-CDS-H-canaliculatus_F_contig1259:21097..211481696845636.0504959-CDS-H-canaliculatus_F_contig1259:21097..21148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 21098..21148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1259.2173.1

>prot_H-canaliculatus_F_contig1259.2173.1 ID=prot_H-canaliculatus_F_contig1259.2173.1|Name=mRNA_H-canaliculatus_F_contig1259.2173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
MNAEATVDNNFELFEAQRVEEVKDILEEFLRCELYYHCRALEMLAPALAH
IGGVNADSARENMREEIEGMNKQLHYT*
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mRNA from alignment at H-canaliculatus_F_contig1259:20166..21148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1259.2173.1 ID=mRNA_H-canaliculatus_F_contig1259.2173.1|Name=mRNA_H-canaliculatus_F_contig1259.2173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=983bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:20166..21148+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGCGGAGGCTACAGTGGACAACAATTTTGAGCTGTTCGAGGCGCA
GCGGGTAGAAGAAGTCAAGGTGGGACCAGCAAGCTAGCTAGCTGTAGAGC
AATCGCGGCTGAATGCAGCGTGACGCCATCTGCAAGCTTCCATATTTCGT
CGCGACAACTTAGTTATGATACTAGGAAGAATATTGTAGAAGTATCATAG
CACAACCTGTGTCTGGAGAGCTTGTAAAGCCGTGAAAATATAGCTAGCCT
TCCACCGAAATTAACTTAACGCAGGACATTTTGGAAGAGTTCCTCCGCTG
CGAACTGTATTATCACTGCCGAGCGCTGGAAATGCTGGCACCAGCATTGG
CACACATCGGCGGTGTGAACGCTGATTCGGCACGAGAGGTGGGTGATATC
AGTGAAATCGAAAGCCAAGAACAAACAGCATCAATTCGCACCGGTTTCTC
CTGGGAGCGATGCCGGTCGCCTTGGTGCGATTTCACTTTGCGGTTTAGGC
CTGTCTTCGTTTTGTCGTTGTCCACGCAAGAGCGTTTTTGCAGAGCACAT
TGCGACCGCCCTATCATAAGCTATGCCCAGGTGGGCTGAGAAGTCCCAAA
AACTCGAAGAATAAGCGTCCACGGCATGCACATGTTTTTTTCTAGGTGTT
TCGAGAAGAAGGGATACGAGGTGAATGCCGCGAAAAGGGCGAAAATAAGC
CTTTCGATTTTTTTTACAACGAGCGTCCTGTGAGGCTTTCGTTTCTTTTG
TTACACTTGCTTCGTGCAACCTATGTAAACAACGCATTATATTGCAACAG
AAAATGTGCCCACCGTTGGACGAGGATGGAAAATAGAAGGAGAACTCAAA
GCTCGTATCTACATGAGCAAAGAAAATATCGTGGCATGCAAAAAGCCCAC
TTGAATGCCGTCATCTTTGTTTTGCGTCGCAGAACATGCGGGAGGAAATC
GAAGGCATGAACAAGCAGCTTCACTATACCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1259:20166..21148+

>mRNA_H-canaliculatus_F_contig1259.2173.1 ID=mRNA_H-canaliculatus_F_contig1259.2173.1|Name=mRNA_H-canaliculatus_F_contig1259.2173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:20166..21148+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGCGGAGGCTACAGTGGACAACAATTTTGAGCTGTTCGAGGCGCA
GCGGGTAGAAGAAGTCAAGATGAACGCGGAGGCTACAGTGGACAACAATT
TTGAGCTGTTCGAGGCGCAGCGGGTAGAAGAAGTCAAGGACATTTTGGAA
GAGTTCCTCCGCTGCGAACTGTATTATCACTGCCGAGCGCTGGAAATGCT
GGCACCAGCATTGGCACACATCGGCGGTGTGAACGCTGATTCGGCACGAG
AGGACATTTTGGAAGAGTTCCTCCGCTGCGAACTGTATTATCACTGCCGA
GCGCTGGAAATGCTGGCACCAGCATTGGCACACATCGGCGGTGTGAACGC
TGATTCGGCACGAGAGAACATGCGGGAGGAAATCGAAGGCATGAACAAGC
AGCTTCACTATACCTGAAACATGCGGGAGGAAATCGAAGGCATGAACAAG
CAGCTTCACTATACCTGA
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