mRNA_H-canaliculatus_F_contig1259.2172.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1259.2172.1
Unique NamemRNA_H-canaliculatus_F_contig1259.2172.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1259.2172.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.480e-44
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 3 
Query:  279 DGVKHGISFSAKIKTIAAQEPFADLQDRLVGLAEVTERISLERRSIMIDRAKSQVLHKLTETKKGVIAPTQALLQDRDNCVKALLKAEEK 548
            DGVKHGISFS KIKTIAAQEPFADLQDRLVGLAE+TERISLER++IMIDRAKSQVL+KL + KK VIAPTQALLQDRD+CVKAL+KAEEK
Sbjct:   37 DGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1259.2172.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.330e-27
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 3 
Query:  282 GVKHGISFSAKIKTIAAQEPFADLQDRLVGLAEVTERISLERRSIMIDRAKSQVLHKLTETKKGVIAPTQALLQDRDNCVKALLKAE 542
            GV  G+ FS ++K +AAQEPFADLQDRLV L+EVTERI+LER+  + DRA+ QVL KLTE +  VIAPT+ALL+DRD C+++L+KAE
Sbjct:   38 GVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1259.2172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS5_ECTSI1.480e-4487.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA2.330e-2764.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1259contigH-canaliculatus_F_contig1259:17959..19795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size548
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1259.2172.1prot_H-canaliculatus_F_contig1259.2172.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1259 18375..19795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.3092508-UTR-H-canaliculatus_F_contig1259:17958..183741622928978.3092508-UTR-H-canaliculatus_F_contig1259:17958..18374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 17959..18374 +
1696845635.9841204-UTR-H-canaliculatus_F_contig1259:17958..183741696845635.9841204-UTR-H-canaliculatus_F_contig1259:17958..18374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 17959..18374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.32571-CDS-H-canaliculatus_F_contig1259:18374..183771622928978.32571-CDS-H-canaliculatus_F_contig1259:18374..18377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 18375..18377 +
1696845635.9930642-CDS-H-canaliculatus_F_contig1259:18374..183771696845635.9930642-CDS-H-canaliculatus_F_contig1259:18374..18377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 18375..18377 +
1622928978.3471706-CDS-H-canaliculatus_F_contig1259:19135..192071622928978.3471706-CDS-H-canaliculatus_F_contig1259:19135..19207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 19136..19207 +
1696845636.0029175-CDS-H-canaliculatus_F_contig1259:19135..192071696845636.0029175-CDS-H-canaliculatus_F_contig1259:19135..19207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 19136..19207 +
1622928978.3638937-CDS-H-canaliculatus_F_contig1259:19738..197951622928978.3638937-CDS-H-canaliculatus_F_contig1259:19738..19795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 19739..19795 +
1696845636.0136294-CDS-H-canaliculatus_F_contig1259:19738..197951696845636.0136294-CDS-H-canaliculatus_F_contig1259:19738..19795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 19739..19795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1259.2172.1

>prot_H-canaliculatus_F_contig1259.2172.1 ID=prot_H-canaliculatus_F_contig1259.2172.1|Name=mRNA_H-canaliculatus_F_contig1259.2172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=44bp
MIDRAKSQVLHKLTETKKGVIAPTQALLQDRDNCVKALLKAEEK
back to top

mRNA from alignment at H-canaliculatus_F_contig1259:17959..19795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1259.2172.1 ID=mRNA_H-canaliculatus_F_contig1259.2172.1|Name=mRNA_H-canaliculatus_F_contig1259.2172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1837bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:17959..19795+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCTTGACGAGAAAGGGCGAAGACTTCATGGTCGATTGGAGTTCTT
CGATAGAAATGTGACTCAACTCACGAAGCACGTTGGACAAATAGTATCAA
ACCACCAAGGCAAGTGAGAAGTCATGGTCGGCGTGATGACTACACGCCAA
ATGTGTCAAGCACAGGCTCACGGGTGCATCATGGTTGATCCGCGCGCAGG
TGACGTCTTCATTCTCTGCCTTTTCAGGCCGAGATACACGTGGTAAAAGT
TGCATACTCCTTCCTACTGCTGTTATCAGATGGTGTGAAGCACGGGATAA
GTTTCAGCGCGAAGATCAAGACCATTGCTGCACAGGAACCGTTCGCAGAT
CTCCAGGATAGACTGGTCGGGTTGGCCGAAGTTACTGAAAGAATTTCTCT
GGAGAGAAGGAGCATCATGGTGAGCGACTTAGCTTGCTGGCCCGAGAAAT
CCTGGTCCTTCTTCTTCTGTGGTTTGCCGCAACACGTCGATACTGCAAAT
TTCCGCTTTAGATCCATTCGCACACATTTAACTCCACACTCCCCTCCTGG
GGAACTAAATTCTTGTCATTCCAGCACACTTCACCCGAAATACTTTCAAA
GCCAGGGTTCTCATCAGTCGTGATTGCTAGACAGTGTAGAATTGCTCTCT
CTCTGTGGGCGCTCTTGAACACCCGCGGGCTAGGACTGTGCCTGGTATCT
TTGGGTCTCGTCACCGCCCTTCCTGTTGCAGAGAAGCGTAGCATCGAGAG
TCGTCTCGCTGGGGGTGGGTTCCTACACGCCAAGAAAAACGGGCTAAGCT
GCAGGCCAACTCGGCGTACGTCTTGTGAAGGGGAGGCGACAAAAAAATTC
AAGCTTTGTTAACATCACAAGCGCGTGTACTGAGAAACACACTCGATGAG
GGGCGAGGCAACACTGAACTAATGCATGCAGGTTACGTGCTTCTTCTACG
GTACACGCGGCCGCGGAAGGATCGCTCGGCCGCGTCTAACCCCTTTCAAA
AAAAGAGTCAACAACACGGAATAAAATAGCAATCGCAGGGAGACTGCAGA
TCAATATTTCGGTGTTCAGGTTACCCCAGAAAAGTGATGTTAGGCAATGT
GGTGCTACTTGCAAAAGCTGCACCTTAATCGAGTACATGGCATTTCTATA
CCTTCTACTACTGCTTCGGCCCACCAGATCGATCGGGCGAAAAGCCAAGT
GCTTCACAAGTTGACAGAGACCAAGAAAGGTGTGATCGCACCGACCCAGG
TAAGTCGACAACTATAAGCACCTCCAAGTCTAAGAGATTGTGCGTGCATT
ACAACACACAGTCTAAAGCACTCAAGTCTGGGGAGGATGTCAATGATTTT
CATTCATTTGGTCAATGACCGTCATCGACCATCAGCCCACGTAGATCCTG
TAGGGTGAACACTTCGCCATTGAGCTAGCAATCAGCATCTAACAAAGGTG
TAACCCAATTGTACACCTAAAATAAATACTCCGTGGGGTTGGAGCCCGAA
AAGCATCATATCAGACAAGATGCGCGGTACGTCATTAGACTGGCGCTACA
GTAGCAACATGTTTTCGCGCAGCGGGCGAATAGACTAAAAAAAGTCTCGA
AGGAGCGTCAATCTAGAAAACGTGCCAAGACCGACACTCTTGTCACTACT
TCTCTCTCTCCTGGGCAGTTACGCAAGACACTGCGTTCTTTTTCCCTTAG
CCTCAACGAAGGTGGACTTCCAACTACACGACTACTGGACACCTCGCAAC
TCCTTGCTCCGATGCTCTCTCCTTCTCCAGGCCTTGTTGCAGGATAGAGA
CAATTGCGTGAAGGCCCTTCTCAAGGCGGAGGAAAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1259:17959..19795+

>mRNA_H-canaliculatus_F_contig1259.2172.1 ID=mRNA_H-canaliculatus_F_contig1259.2172.1|Name=mRNA_H-canaliculatus_F_contig1259.2172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:17959..19795+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGATCGATCGGGCGAAAAGCCAAGTGCTTCACAAGTTGACAGAGAC
CAAGAAAGGTGTGATCGCACCGACCCAGATCGATCGGGCGAAAAGCCAAG
TGCTTCACAAGTTGACAGAGACCAAGAAAGGTGTGATCGCACCGACCCAG
GCCTTGTTGCAGGATAGAGACAATTGCGTGAAGGCCCTTCTCAAGGCGGA
GGAAAAGGCCTTGTTGCAGGATAGAGACAATTGCGTGAAGGCCCTTCTCA
AGGCGGAGGAAAAG
back to top