mRNA_H-canaliculatus_F_contig1259.2170.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1259.2170.1
Unique NamemRNA_H-canaliculatus_F_contig1259.2170.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1259.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1259contigH-canaliculatus_F_contig1259:1614..3697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size542
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.0449133-CDS-H-canaliculatus_F_contig1259:1613..19611622928978.0449133-CDS-H-canaliculatus_F_contig1259:1613..1961Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 1614..1961 -
1696845635.8670502-CDS-H-canaliculatus_F_contig1259:1613..19611696845635.8670502-CDS-H-canaliculatus_F_contig1259:1613..1961Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 1614..1961 -
1622928978.057273-CDS-H-canaliculatus_F_contig1259:3505..36971622928978.057273-CDS-H-canaliculatus_F_contig1259:3505..3697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 3506..3697 -
1696845635.8771055-CDS-H-canaliculatus_F_contig1259:3505..36971696845635.8771055-CDS-H-canaliculatus_F_contig1259:3505..3697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 3506..3697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1259.2170.1prot_H-canaliculatus_F_contig1259.2170.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1259 1614..3697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1259.2170.1

>prot_H-canaliculatus_F_contig1259.2170.1 ID=prot_H-canaliculatus_F_contig1259.2170.1|Name=mRNA_H-canaliculatus_F_contig1259.2170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=180bp
GLREAGEAETATSTTTAAQASAAAVAAITTARTSGLEPGMAVLCLDVFVS
AIGGDEIRRWRPAKISEIIGGLEGAEGDGDGDEGDDLQVCVAFSSFADEK
QSVHLRLRDDWSRLAPPWAVAEEAMDDGAPLTGAALAASRRLFEPRAHRC
RDSPPAAAGGGESAVPQRVEGTKGDGSSSR
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mRNA from alignment at H-canaliculatus_F_contig1259:1614..3697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1259.2170.1 ID=mRNA_H-canaliculatus_F_contig1259.2170.1|Name=mRNA_H-canaliculatus_F_contig1259.2170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2084bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:1614..3697- (Hapterophycus canaliculatus Oshoro5f female)
GGGCTGCGCGAAGCGGGAGAGGCGGAGACGGCAACATCGACGACGACGGC
GGCGCAGGCGTCGGCGGCAGCGGTAGCGGCGATAACTACAGCGAGAACAT
CGGGCTTGGAGCCTGGGATGGCAGTGCTGTGCCTCGACGTTTTTGTCTCG
GCCATCGGGGGAGACGAAATTCGCCGCTGGCGGCCGGCGAAGGTGGGTGC
GGAGAAAATCCAAAGCTGTAGAGACTAGAGACTAAACAAGCGATTTCCTC
GTTCTTGCGAGGATTCTGTCTTGAAGTCGTTCTCGTCTGGTTATTTTAAC
TCAGACCTCGGCGTTTGAAAAAGGTGAAGAGATGCCTGTTCTGCACGTAT
TCCAGGTCATCATGTCCATGCTTATCCCCCAGCGATTCAGCCACCACCTG
TACAACGCCCTACGCAGCCATACCTATCCGATTTGGAGCGGCCTCCCGCG
ATGTAAACTTTAAAACTGGATCGTCTTGTCGTTGTACTGCTGTAAGCCCG
GCACTCATGACGTCCGGGGGCTTCACCTCGACAGACTGAAAAAAATGCGC
GAAGTCCGGAACATCCTCATGGCCCTCTTCTCCCCCAACGCCTCGGGACC
ACAAGCATGCGCCCCAGTGTTGCGCCGTGTGATGGCTGCCGGCATCGGCG
ACTCCCGCCGTTGGAGGCGATTCTCGCCGCTGTGGTCCTGCAAGGAAGCC
ATCGAATCCCGATCATCTCAAACAAAGCACAATCGCAGCAGCCGGTTTCA
AAAGATCCAAATCCCGAACCGACCTAGAGAAGATAAATTCCAATCCTGTA
CCCACTCGACGGGTATTGTCCGCGATGAACGTCTTCCTGGGTGGGGATTT
GTTAACGTGTTTAGAAGATCACCTACGCGTTAACCCTCCCCCTCTCTATA
GTTGGAGTTTTTTCTAGCCGGCGATTCCAGTCTCTACAGTAGGAGTTTTT
TCTAGCATGAAGGGGAATCGGCTTTGTAGCGACTGGAATCGCCGACGGGC
GGCAGCGTGAAAAAAATCCCGCCTGCCTCGTGATTCACTTTGTATTCGAT
GTGTCGTACTTCATGTTTTTCACTCACGTTTTTCACCGGTGAAACACAAG
ACACAAGTTCCGCGTTCCGAGTGAGGTTTTGTGATGTCGAAATTTGTCCC
GCCTCGGCCCCTTCCGTTAGATACGTGTACAAGAGCTCTCCGCGTGGGCC
ACGTTTAGCGCTAGTCTTCATCGCAAGATCGGAGTCTGCCTCCCCCCCCG
CCTACGATTCCCTTCCATTTTCTGTTCATTCGTTCGTTGTGAAAAAACAA
AGGGAATGTAGCGAACTCGACCCCAGGTCTACGCCGCCGAAGTGAAACGC
CTCATCGCTGGTGTCACAACGTGAAAATACGGGATCATCTTCGACACGTC
GTGAGAAGATTGGTGCCTTTCTAACATCAGCCTCACGCGGACCAACTTCC
TTTCAACCGCAATCTCCTCGGGTAGACAACTGAGAGAAGGAGGTGCAGGT
TTCAGAAGCGGAAGTCGCTAGAAGTGCGTTTTCAATGTATCTGACAGCAA
GGTTAAATGATGGATCTGGATATACCCTCAAGAAGCAGAGAGCGAGCAGC
ACGCGGTGCGAAGGGCCACCTGCTTCTTTGGGGGGTCGTTTATCGGTCGG
TGCCTCTACACCCTTCCCTTTGATCGACGCCATTGGACCCCACTTCCCTC
CCGCAAACTTCCACCCTCCACCCCCCCCCACCGCAGATCTCAGAGATTAT
CGGCGGGCTCGAAGGGGCAGAAGGAGACGGCGACGGCGACGAAGGAGACG
ATCTGCAGGTGTGTGTGGCCTTCTCATCCTTCGCGGACGAAAAGCAGAGC
GTGCACCTTCGCCTGAGGGACGACTGGAGCCGTCTGGCCCCCCCGTGGGC
TGTCGCCGAGGAAGCGATGGACGACGGAGCCCCCTTGACCGGCGCCGCCC
TGGCCGCCAGCCGGCGGCTGTTCGAACCCCGCGCGCACCGCTGCCGAGAT
AGCCCGCCCGCGGCAGCGGGAGGAGGGGAATCGGCCGTGCCGCAGAGGGT
CGAGGGCACCAAAGGCGATGGCAGCAGCAGCAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1259:1614..3697-

>mRNA_H-canaliculatus_F_contig1259.2170.1 ID=mRNA_H-canaliculatus_F_contig1259.2170.1|Name=mRNA_H-canaliculatus_F_contig1259.2170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1080bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:1614..3697- (Hapterophycus canaliculatus Oshoro5f female)
GGGCTGCGCGAAGCGGGAGAGGCGGAGACGGCAACATCGACGACGACGGC
GGCGCAGGCGTCGGCGGCAGCGGTAGCGGCGATAACTACAGCGAGAACAT
CGGGCTTGGAGCCTGGGATGGCAGTGCTGTGCCTCGACGTTTTTGTCTCG
GCCATCGGGGGAGACGAAATTCGCCGCTGGCGGCCGGCGAAGGGGCTGCG
CGAAGCGGGAGAGGCGGAGACGGCAACATCGACGACGACGGCGGCGCAGG
CGTCGGCGGCAGCGGTAGCGGCGATAACTACAGCGAGAACATCGGGCTTG
GAGCCTGGGATGGCAGTGCTGTGCCTCGACGTTTTTGTCTCGGCCATCGG
GGGAGACGAAATTCGCCGCTGGCGGCCGGCGAAGATCTCAGAGATTATCG
GCGGGCTCGAAGGGGCAGAAGGAGACGGCGACGGCGACGAAGGAGACGAT
CTGCAGGTGTGTGTGGCCTTCTCATCCTTCGCGGACGAAAAGCAGAGCGT
GCACCTTCGCCTGAGGGACGACTGGAGCCGTCTGGCCCCCCCGTGGGCTG
TCGCCGAGGAAGCGATGGACGACGGAGCCCCCTTGACCGGCGCCGCCCTG
GCCGCCAGCCGGCGGCTGTTCGAACCCCGCGCGCACCGCTGCCGAGATAG
CCCGCCCGCGGCAGCGGGAGGAGGGGAATCGGCCGTGCCGCAGAGGGTCG
AGGGCACCAAAGGCGATGGCAGCAGCAGCAGAATCTCAGAGATTATCGGC
GGGCTCGAAGGGGCAGAAGGAGACGGCGACGGCGACGAAGGAGACGATCT
GCAGGTGTGTGTGGCCTTCTCATCCTTCGCGGACGAAAAGCAGAGCGTGC
ACCTTCGCCTGAGGGACGACTGGAGCCGTCTGGCCCCCCCGTGGGCTGTC
GCCGAGGAAGCGATGGACGACGGAGCCCCCTTGACCGGCGCCGCCCTGGC
CGCCAGCCGGCGGCTGTTCGAACCCCGCGCGCACCGCTGCCGAGATAGCC
CGCCCGCGGCAGCGGGAGGAGGGGAATCGGCCGTGCCGCAGAGGGTCGAG
GGCACCAAAGGCGATGGCAGCAGCAGCAGA
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