mRNA_H-canaliculatus_F_contig1258.2163.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1258.2163.1
Unique NamemRNA_H-canaliculatus_F_contig1258.2163.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1258.2163.1 vs. uniprot
Match: D8LR47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR47_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.440e-31
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    4 LLGSCCFLQAVQAS--ATMRFMEHLHGSAGASSSPDGGGDEQQLFVSKRAWVEDRACTRLSRTPHIITKRKQQPPWFFSTVVMAEGFYSPEVAAISC 288
            LL +   + +VQAS  A MRFMEHLHGS   S SPD GG+  QL+VSKRAWVEDRACTRLSRTPH+IT    Q  WF + V MAEGFYS +VAA++C
Sbjct:    6 LLAAGIVVGSVQASPSAPMRFMEHLHGSGVDSQSPDRGGEGLQLYVSKRAWVEDRACTRLSRTPHLITT--SQSTWFPTAVEMAEGFYSADVAALAC 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1258.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR47_ECTSI8.440e-3163.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1258contigH-canaliculatus_F_contig1258:4176..6545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_004380.1
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.3491952-CDS-H-canaliculatus_F_contig1258:4175..43331622928972.3491952-CDS-H-canaliculatus_F_contig1258:4175..4333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1258 4176..4333 -
1696845635.519632-CDS-H-canaliculatus_F_contig1258:4175..43331696845635.519632-CDS-H-canaliculatus_F_contig1258:4175..4333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1258 4176..4333 -
1622928972.3602097-CDS-H-canaliculatus_F_contig1258:6412..65451622928972.3602097-CDS-H-canaliculatus_F_contig1258:6412..6545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1258 6413..6545 -
1696845635.528359-CDS-H-canaliculatus_F_contig1258:6412..65451696845635.528359-CDS-H-canaliculatus_F_contig1258:6412..6545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1258 6413..6545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1258.2163.1prot_H-canaliculatus_F_contig1258.2163.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1258 4176..6545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1258.2163.1

>prot_H-canaliculatus_F_contig1258.2163.1 ID=prot_H-canaliculatus_F_contig1258.2163.1|Name=mRNA_H-canaliculatus_F_contig1258.2163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
LLLGSCCFLQAVQASATMRFMEHLHGSAGASSSPDGGGDEQQLFVSKRAW
VEDRACTRLSRTPHIITKRKQQPPWFFSTVVMAEGFYSPEVAAISC*
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mRNA from alignment at H-canaliculatus_F_contig1258:4176..6545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1258.2163.1 ID=mRNA_H-canaliculatus_F_contig1258.2163.1|Name=mRNA_H-canaliculatus_F_contig1258.2163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2370bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1258:4176..6545- (Hapterophycus canaliculatus Oshoro5f female)
CTACTCCTTGGCAGCTGCTGTTTCTTGCAGGCAGTGCAAGCTTCGGCCAC
GATGCGCTTCATGGAGCACTTGCATGGCTCTGCCGGAGCCTCCTCATCGC
CGGATGGGGGGGGGGATGAGCAGCAGCTCTTCGGTGAGAGACTTACCCCG
AGCACGCACGAAACATCGAGTCTAGCAGCAAAGGTTGCGGAAATTCCGCT
ATGAACCCAGCCCCTGCACAACTTCACACTTTGGAGAGCGAGGAGAGAAA
GAGAGGGCGGCCACGGGGAGGGGCTGTCTGGTACCATTGGTTAAGCAACA
CAGTAGCTGATCCTCACCCTCATCGTTTGAGCTGATGGTTGCCCCTCGTG
GAGGAAGCTGATGGTTTGCCTCCATTGCTTCCTCTTCCTCTTGTTCGACG
AAAGAGAGCCGTTTCCTTGAAGATCTTTCTCTCAAGGCCAGATCGCGGTC
GTAGAGCAGCTGTGGCAGTATCTCGGGGATCTCGGGGGAACGCGCGCCCA
CATATCGACCGAAATCAGCAGCATGCTTGACGCTCGCCTTTCGGAAAGCC
TGATACTTAGAAGTGGCCTCACCAGGAGGCGGATCCCCGTTGCTAGACCA
ATCGCAAGGACCCAGGGCCAATCGCAAGGACTCAGGGCCCCCTGACTACA
AGCAAGTCGAGTCCCACGCCCTTAAATCGTGCTCGAAAATTGTTACAGAT
CTCATCTGCCCGATGCCAATCGGCGGATTTGGGACCCAAAAAGTAGGCAT
GTGTCCGCCATGTGGATATCGAGCTCGTAATTAGTCTACACGCGGGAGAA
GGTTAGGCTTGCACACTCCTGTTCCGTGGACGGAATAAAAGGGACACACA
TCAGTAGCGAGTTGACGCGCTTGTTGTTCAGAGAGGGGGGACAGATATCA
CTTGCAGACAGCCCACAGAAACATTTCGGTCCTTTTTTCAACAAGCGACA
AGAGGGACGCATGCCTGCAAGTATCCACGAAAGTGCACTCGCTTTTTCGC
CGACCTATTTATCTATGTAAGCACATTCATTCCAATACGATCGCCGTATG
AAACTAAACGGACGTATAACGACGTGCAACTTCTGGCGGAGGCCGTGCGA
GCGAGGGTTTACTTTTATCACACGCACATACCTTCGCACCAACGGCTATC
ATCCTACCTGTTTGCGCCACCCACCAAGCAGTTACCTCAACCCTGAAATG
CTCCCGATAGCGACCCAACCGATGTACAAGTAGATTCTCCGAGTATAGAT
GGCAGTATACAAGCGCAAAACGTTTGAATGCCAAGCCTCCTCACGCCGCA
CGACCTCGAGAGTTTCGATTTCGTTCTCGTGTTTTCGACCGCCCGAAAGC
ACTTGCCTCGATCCAATTTGTACGTCATCTGGTCCTGTAATCTGCAGAAG
AGCAACATATTTTGGTGTGACAAAAAGTTCAACGCGCAGCATAAGAGAGG
CGTCCAACAAGTATATTAGATCAAGACCTTCTCTGCGTTCGTACTAATAT
TGCGTCTCCAACATTCCGTGGACTCTTGTCCAAAAGCGGCAAGAGGTTAA
CGTATTTGATGGGTTCCAGTTGATCCTCCTTTCATAAACTCCAGAAGAAA
CAGGACTCCTCCCGAAATGTGTGTGAGACGGATGTTATGCCGTGCTACTG
CTGGATGATGAGCTGCGGACGTTCTTTCGGTTATCCATGTTATCCATGTG
GAAGGAAGGGGAGAAAACATCAGATAAGCGCACAAGCGAATGTAGCTGAC
TTCTCCTCGACTCCGGGAAAGCAGGAAAAAAGCATGACCCACAGCGATAC
GGGATTAGATCAGGCTCTCCCTTCCATTTCCGAACGACTATTTTTCCTTG
CATTTCTTAACGCTATATGTGCTCGAAGGTGCTAACCTTTGTCGGGAGAA
TCTGTAGAGGTCCGATCTCGCCCGCTATACTCTGCGTTCTCTCTTCGCTA
GAAGTTTGTTTTGAGTGATTTCGTGTTTGGCATCGCGCGGATGTGCATGC
GATCTAGACGTTGGAGTGCCGCCTCCACTGCTGTTATGAGCAGAAAGAAG
CCTGACCCTCAAACCCTCCGCGCTTGAAAGCCTTGTTTTTTATTTTCGCT
TCCACGTCACGGCAACCCTCGTGCCAATAGTCACCCCCTCTGGAAGCCTT
GTTTCTGACGCACACACTTCCGCCGCTGCCGCCTCTCCCCCCGACGCATC
CCACGACCACAGTTTCTAAGAGAGCCTGGGTAGAAGACCGCGCCTGCACC
CGCCTCTCCCGCACCCCCCACATCATTACGAAGAGGAAGCAGCAGCCACC
GTGGTTTTTCAGCACCGTCGTGATGGCGGAGGGATTTTATTCGCCGGAAG
TGGCCGCCATCTCCTGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1258:4176..6545-

>mRNA_H-canaliculatus_F_contig1258.2163.1 ID=mRNA_H-canaliculatus_F_contig1258.2163.1|Name=mRNA_H-canaliculatus_F_contig1258.2163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1258:4176..6545- (Hapterophycus canaliculatus Oshoro5f female)
CTACTCCTTGGCAGCTGCTGTTTCTTGCAGGCAGTGCAAGCTTCGGCCAC
GATGCGCTTCATGGAGCACTTGCATGGCTCTGCCGGAGCCTCCTCATCGC
CGGATGGGGGGGGGGATGAGCAGCAGCTCTTCGCTACTCCTTGGCAGCTG
CTGTTTCTTGCAGGCAGTGCAAGCTTCGGCCACGATGCGCTTCATGGAGC
ACTTGCATGGCTCTGCCGGAGCCTCCTCATCGCCGGATGGGGGGGGGGAT
GAGCAGCAGCTCTTCGTTTCTAAGAGAGCCTGGGTAGAAGACCGCGCCTG
CACCCGCCTCTCCCGCACCCCCCACATCATTACGAAGAGGAAGCAGCAGC
CACCGTGGTTTTTCAGCACCGTCGTGATGGCGGAGGGATTTTATTCGCCG
GAAGTGGCCGCCATCTCCTGCTGATTTCTAAGAGAGCCTGGGTAGAAGAC
CGCGCCTGCACCCGCCTCTCCCGCACCCCCCACATCATTACGAAGAGGAA
GCAGCAGCCACCGTGGTTTTTCAGCACCGTCGTGATGGCGGAGGGATTTT
ATTCGCCGGAAGTGGCCGCCATCTCCTGCTGA
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