mRNA_H-canaliculatus_F_contig102.217.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig102.217.1
Unique NamemRNA_H-canaliculatus_F_contig102.217.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig102.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig102contigH-canaliculatus_F_contig102:37931..38770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size840
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928648.2564857-UTR-H-canaliculatus_F_contig102:37930..382781622928648.2564857-UTR-H-canaliculatus_F_contig102:37930..38278Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 37931..38278 +
1696845512.2614822-UTR-H-canaliculatus_F_contig102:37930..382781696845512.2614822-UTR-H-canaliculatus_F_contig102:37930..38278Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 37931..38278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928648.271096-CDS-H-canaliculatus_F_contig102:38278..387701622928648.271096-CDS-H-canaliculatus_F_contig102:38278..38770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 38279..38770 +
1696845512.2700052-CDS-H-canaliculatus_F_contig102:38278..387701696845512.2700052-CDS-H-canaliculatus_F_contig102:38278..38770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 38279..38770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig102.217.1prot_H-canaliculatus_F_contig102.217.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig102 38279..38770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig102.217.1

>prot_H-canaliculatus_F_contig102.217.1 ID=prot_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MLNRMRPQYLSCAEILHSRRKCSLELHMHAILRKYHPQTFLRQVPTSVVS
AATTQTPDISLVERVGGALIVTLQLHHAENNLSRLLQPYPCSLSARDHSL
ICPRSLLCFRLLFLCCSPSLCCAMVKMSAGAPERKLKPTQKRGGSLCSCL
FESTPWRVHPTFR*
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mRNA from alignment at H-canaliculatus_F_contig102:37931..38770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig102.217.1 ID=mRNA_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:37931..38770+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTTTATACGAAGACTGGTGGAATGCGCGACTTGCCGTGTGGCCACGGA
TAGTTGTCAAACGCTGCTTGCAGCTTTCATCTAAGGGAGCGATGCTATAC
TGCCAACGGATCAGGGTTCCAGATGGTCAGGATCGGGCTTGAAGCCACAT
GGGGCTGCTGTAGCGAGCTGTGCCCTGCGTTTGGAGTTGTTGGCACAGCT
GGGGTGATTGCGGTATTTCCAAACCAAACTACGGCGCGCTGCGTAATCAA
GTCTTTTCTGTGAGTTCAACAGCACATATGCTTTCTACACATGGCACAGA
CAGAAGTAGCACCATAGGCTTAATACCGGTTTCACTACGGTACTGCCGAT
GTTGAACAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACACT
CCAGACGAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCAAA
TATCACCCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCCGC
CGCGACCACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGGTG
CCTTGATTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCACGA
CTGCTCCAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTAAT
TTGTCCCAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTCTC
CGAGTTTGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGCGA
AAATTGAAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTGTT
TGAATCTACACCCTGGCGAGTGCACCCTACCTTTAGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig102:37931..38770+

>mRNA_H-canaliculatus_F_contig102.217.1 ID=mRNA_H-canaliculatus_F_contig102.217.1|Name=mRNA_H-canaliculatus_F_contig102.217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:37931..38770+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGAACAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACA
CTCCAGACGAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCA
AATATCACCCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCC
GCCGCGACCACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGG
TGCCTTGATTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCAC
GACTGCTCCAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTA
ATTTGTCCCAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTC
TCCGAGTTTGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGC
GAAAATTGAAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTG
TTTGAATCTACACCCTGGCGAGTGCACCCTACCTTTAGATGAATGTTGAA
CAGAATGCGACCACAGTACCTATCCTGCGCCGAAATTCTACACTCCAGAC
GAAAGTGCTCACTTGAACTGCATATGCATGCTATCCTCCGCAAATATCAC
CCCCAGACTTTCCTTCGTCAAGTCCCGACATCTGTTGTTTCCGCCGCGAC
CACGCAGACTCCCGACATATCCTTGGTCGAGAGAGTTGGCGGTGCCTTGA
TTGTGACTCTCCAACTCCATCATGCCGAAAATAATCTGTCACGACTGCTC
CAGCCCTACCCGTGCAGCTTGAGTGCTCGCGATCACTCTCTAATTTGTCC
CAGATCCCTCCTATGTTTCCGTCTCCTATTTCTCTGTTGCTCTCCGAGTT
TGTGTTGTGCAATGGTCAAGATGTCGGCGGGAGCCCCAGAGCGAAAATTG
AAACCGACACAAAAACGCGGCGGATCTTTATGTTCCTGTTTGTTTGAATC
TACACCCTGGCGAGTGCACCCTACCTTTAGATGA
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