mRNA_H-canaliculatus_F_contig12560.2154.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12560.2154.1
Unique NamemRNA_H-canaliculatus_F_contig12560.2154.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A6H5KES1_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KES1_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 3.110e-139
Identity = 203/223 (91.03%), Postives = 215/223 (96.41%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRESSKVF 669
            VYGYGNSGGEIPEGYIDVTLPG+RQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPP ANGPVEIFNQ    VAETHRVRDLA+MIA+KTG+KID+ISNPRNEAAENEL+VKN+KFGNLGV+FKSLD TLLEEVR+ ++ +
Sbjct:  235 VYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPGANGPVEIFNQ----VAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEVRDIAQKY 453
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A6V1JXM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1JXM6_HETAK)

HSP 1 Score: 347 bits (891), Expect = 1.570e-113
Identity = 170/216 (78.70%), Postives = 189/216 (87.50%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEV 648
            VYGYGNSGGEIPEGYIDV LPG R++ ILHPAYPGSVYH TKCLDA++FQFY KNDGL++TDLHQGIVWGTNTPQT++DERLVNRFDYD DYGTVLNRFLMQAALDIP+TVYGTGGQTR FIHVTDTA+C+EAAV NPP A   VEIFNQ    VAET RVRDLA MIAEKTG  I++++NPRNEAAENEL+V N+KF  LGV  K+LDA L +EV
Sbjct:  196 VYGYGNSGGEIPEGYIDVILPGGRERNILHPAYPGSVYHATKCLDAIMFQFYNKNDGLKVTDLHQGIVWGTNTPQTIKDERLVNRFDYDGDYGTVLNRFLMQAALDIPLTVYGTGGQTRAFIHVTDTARCIEAAVNNPPAAGDRVEIFNQ----VAETCRVRDLANMIAEKTGVDINFVNNPRNEAAENELEVVNQKFKMLGVEPKTLDAGLFDEV 407
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A7S2RTH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTH5_9STRA)

HSP 1 Score: 345 bits (886), Expect = 1.110e-112
Identity = 164/216 (75.93%), Postives = 186/216 (86.11%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEV 648
            VYGYG SGGEIPEGYIDV LPG R+ KILHPAYPGS+YH TKCLDALLFQFY KND +R+TDLHQGIVWGTNTPQT+RD+RLVNRFDYD DYGTVLNRFLMQ+ALDIP+TVYGTGGQTR FIH+TDTAKC++ A+ NPP A  PVEI NQ    VAET RVRD+AEM+A KTG+K+ Y++NPRNEAAENELDV N KF +LG++  +LD  L EEV
Sbjct:  201 VYGYGTSGGEIPEGYIDVILPGGRESKILHPAYPGSIYHATKCLDALLFQFYNKNDQMRVTDLHQGIVWGTNTPQTIRDDRLVNRFDYDGDYGTVLNRFLMQSALDIPLTVYGTGGQTRAFIHITDTAKCIQLAIENPPDAGAPVEILNQ----VAETRRVRDIAEMVASKTGAKLQYVNNPRNEAAENELDVSNNKFRSLGLDPITLDERLFEEV 412
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A7S2MBF8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBF8_9STRA)

HSP 1 Score: 337 bits (865), Expect = 2.280e-109
Identity = 157/216 (72.69%), Postives = 186/216 (86.11%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEV 648
            VYGYG SGGEIPEGY+DV LPG R+ KILHPAYPGS+YH TKCLDA LFQFY KNDG+R+TDLHQGIVWGTNTPQT++DERLVNRFDYD D+GTVLNRFLMQ+ALDIP+T+YGTGGQTRGFIH+TDTA+C+E A+ +PP    PVEI NQ    +AET RVRD+A ++AE+TG K+ Y++NPRNEAAENELDV N+KF +LG+N  +LD  L +EV
Sbjct:  215 VYGYGTSGGEIPEGYLDVILPGGRESKILHPAYPGSIYHATKCLDATLFQFYNKNDGVRITDLHQGIVWGTNTPQTIKDERLVNRFDYDGDFGTVLNRFLMQSALDIPLTIYGTGGQTRGFIHITDTARCIELAMNSPPEEGAPVEILNQ----IAETRRVRDVAALVAEQTGVKVQYLNNPRNEAAENELDVSNKKFRSLGLNPITLDERLFDEV 426
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A835Z939_9STRA (UDP-sulfoquinovose synthase plastid n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z939_9STRA)

HSP 1 Score: 334 bits (856), Expect = 3.170e-108
Identity = 166/223 (74.44%), Postives = 181/223 (81.17%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRESSKVF 669
            VYGYGNSGG+IPEGYIDV LPG+R+QKILHPAYPGSVYHTTKCLDALLFQFY KNDGLR+TDLHQGIVWGTNT QTVRDERL+NRFDYDSDYGTVLNRFLMQAAL IPMTVYGTGGQTR FIHV+DTA+CLEAAV NPP     VEIFNQ                          DYISNPRNEAAENELDV+N+KFGNLGV+FKSLD  LL+EV+  ++ +
Sbjct:  198 VYGYGNSGGQIPEGYIDVILPGNREQKILHPAYPGSVYHTTKCLDALLFQFYNKNDGLRVTDLHQGIVWGTNTAQTVRDERLINRFDYDSDYGTVLNRFLMQAALGIPMTVYGTGGQTRAFIHVSDTARCLEAAVNNPPATGSGVEIFNQXXXXXXXXXXXXXXXXXXX----XXXDYISNPRNEAAENELDVRNDKFGNLGVDFKSLDENLLDEVQNIAQKY 416
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A1X6PDC9_PORUM (Epimerase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDC9_PORUM)

HSP 1 Score: 333 bits (853), Expect = 1.150e-107
Identity = 161/216 (74.54%), Postives = 183/216 (84.72%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEV 648
            VYGYG SGGEIPEGYIDV LPG R  KILHPAYPGSVYH TKCLDALLFQFY++NDGLR+TDLHQGIVWGTNT  T RDERL+NRFDYDSDYGTVLNRFL+QAALD+P+TVYGTGGQTR FIH++DTAKC+  A+ NPP A  PVEIFNQ    VAETHRVRDLA ++A KTG+K+  I+NPR EAAEN+LDV N KF +LG +  +L+  LL+EV
Sbjct:  176 VYGYGTSGGEIPEGYIDVLLPGGRPSKILHPAYPGSVYHATKCLDALLFQFYSRNDGLRVTDLHQGIVWGTNTAATARDERLINRFDYDSDYGTVLNRFLVQAALDVPLTVYGTGGQTRAFIHISDTAKCVALAIGNPPEAGAPVEIFNQ----VAETHRVRDLAALVAAKTGTKVANIANPRKEAAENDLDVSNAKFRSLGYDPVTLEDGLLDEV 387
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A6U3UIB3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UIB3_9STRA)

HSP 1 Score: 331 bits (849), Expect = 2.900e-107
Identity = 159/218 (72.94%), Postives = 183/218 (83.94%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRE 654
            VYGYG SGGEIPEGYIDV LPG R+Q ILHPAYPGSVYH TKCLDALL+QFY KND LR+TDLHQGIVWGTNTPQT+RDERL+NRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTR FIHVTDTA+C+E A+ NPP A   VEIFNQ    +AET RVRD+AEM+A++TG + +++ NPR EAAENELDV N+KF NLG++  +LD  L  EV E
Sbjct:  199 VYGYGTSGGEIPEGYIDVILPGGREQNILHPAYPGSVYHATKCLDALLWQFYQKNDNLRVTDLHQGIVWGTNTPQTIRDERLINRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRAFIHVTDTARCIEIAINNPPNAGERVEIFNQ----IAETRRVRDVAEMVAKQTGVEANFLPNPRQEAAENELDVSNKKFCNLGLDPITLDEELFSEVTE 412
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A6V2A4T4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A4T4_9STRA)

HSP 1 Score: 331 bits (848), Expect = 8.780e-107
Identity = 159/225 (70.67%), Postives = 184/225 (81.78%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRESSKVFTS 675
            VYGYG SGGEIPEGYIDV LPG R+  ILHPAYPGSVYH TKCLDALL+QFY KNDGLR+TDLHQGIVWGTNTPQT++DERLVNRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTR FIH+TDTA+C+E A+ NPP +   VEIFNQ    +AET RVRD+A ++AE+TG  ++ + NPR EAAENELDV NEKF NLG+   +LD  L +EV E  K + S
Sbjct:  223 VYGYGTSGGEIPEGYIDVILPGGREANILHPAYPGSVYHATKCLDALLWQFYQKNDGLRITDLHQGIVWGTNTPQTIKDERLVNRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRAFIHITDTARCIEIAINNPPASGERVEIFNQ----IAETRRVRDVAALVAEQTGVDVNLLPNPRQEAAENELDVSNEKFCNLGLEPITLDTGLFDEVTEVVKKYKS 443
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A7S4N1Z5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1Z5_9STRA)

HSP 1 Score: 330 bits (847), Expect = 8.900e-107
Identity = 159/223 (71.30%), Postives = 185/223 (82.96%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRESSKVF 669
            VYGYG SGGEIPEGYIDVTLPG R+  ILHPA+PGSVYH TKCLDALL+QFY KND LR+TDLHQGIVWGTNTPQT+ DERLVNRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTR FIHVTDTA+C+E A+ NPP     VEIFNQ    +AET RVRD+A+M+AE+TG +++++ NPR EAAENELDV NEKF NLG++  +LD  L +EV E  K +
Sbjct:  211 VYGYGTSGGEIPEGYIDVTLPGGRESNILHPAHPGSVYHATKCLDALLWQFYQKNDQLRITDLHQGIVWGTNTPQTLLDERLVNRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRAFIHVTDTARCIEIAISNPPETGERVEIFNQ----IAETRRVRDVAQMVAEQTGVEVNFLPNPRQEAAENELDVSNEKFCNLGLDPITLDTGLFDEVTEVVKKY 429
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BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Match: A0A0G4GT16_VITBC (Epimerase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GT16_VITBC)

HSP 1 Score: 330 bits (845), Expect = 3.780e-106
Identity = 161/218 (73.85%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:    1 VYGYGNSGGEIPEGYIDVTLPGDRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGNLGVNFKSLDATLLEEVRE 654
            VYGYG SGGEIPEGYIDV LPG R+ KILHPAYPGS+YH TKCLDALLFQFY KNDGLR+TDLHQGIVWGTNT QT++DERLVNRFDYD DYGTVLNRFLMQ+AL IP+TVYGTGGQTR FIH+ DT +C+E A++NPP    PVEI NQ    VAET RVRDLAEMIA KTG ++ Y++NPR EA ENEL+V N KF  LG++  +LD  LLEEVR+
Sbjct:  217 VYGYGTSGGEIPEGYIDVILPGGREGKILHPAYPGSLYHATKCLDALLFQFYNKNDGLRVTDLHQGIVWGTNTDQTLKDERLVNRFDYDGDYGTVLNRFLMQSALGIPLTVYGTGGQTRAFIHIRDTCRCIELALINPPKHGQPVEILNQ----VAETLRVRDLAEMIASKTGGRVAYLANPRQEAPENELEVSNRKFRILGLDPITLDEGLLEEVRQ 430
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12560.2154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KES1_9PHAE3.110e-13991.03Epimerase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6V1JXM6_HETAK1.570e-11378.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RTH5_9STRA1.110e-11275.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2MBF8_9STRA2.280e-10972.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z939_9STRA3.170e-10874.44UDP-sulfoquinovose synthase plastid n=1 Tax=Tribon... [more]
A0A1X6PDC9_PORUM1.150e-10774.54Epimerase domain-containing protein n=1 Tax=Porphy... [more]
A0A6U3UIB3_9STRA2.900e-10772.94Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6V2A4T4_9STRA8.780e-10770.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4N1Z5_9STRA8.900e-10771.30Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0G4GT16_VITBC3.780e-10673.85Epimerase domain-containing protein n=1 Tax=Vitrel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12560contigH-canaliculatus_F_contig12560:332..3403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.0
Seed ortholog evalue3.1e-51
Seed eggNOG ortholog2880.D8LSQ1
Preferred nameSQD1
KEGG rclassRC00563,RC01469
KEGG koko:K01785,ko:K06118
KEGG ReactionR01602,R05775,R10619
KEGG Pathwayko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG ModuleM00632
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
EggNOG free text desc.racemase and epimerase activity, acting on carbohydrates and derivatives
EggNOG OGsCOG1087@1,KOG1371@2759
EC3.13.1.1,5.1.3.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size1134
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12560.2154.1prot_H-canaliculatus_F_contig12560.2154.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12560 1731..3019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.4788415-UTR-H-canaliculatus_F_contig12560:331..4561622928971.4788415-UTR-H-canaliculatus_F_contig12560:331..456Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 332..456 +
1696845635.0082214-UTR-H-canaliculatus_F_contig12560:331..4561696845635.0082214-UTR-H-canaliculatus_F_contig12560:331..456Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 332..456 +
1622928971.4929037-UTR-H-canaliculatus_F_contig12560:858..10261622928971.4929037-UTR-H-canaliculatus_F_contig12560:858..1026Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 859..1026 +
1696845635.0220227-UTR-H-canaliculatus_F_contig12560:858..10261696845635.0220227-UTR-H-canaliculatus_F_contig12560:858..1026Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 859..1026 +
1622928971.510694-UTR-H-canaliculatus_F_contig12560:1723..17301622928971.510694-UTR-H-canaliculatus_F_contig12560:1723..1730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 1724..1730 +
1696845635.0311742-UTR-H-canaliculatus_F_contig12560:1723..17301696845635.0311742-UTR-H-canaliculatus_F_contig12560:1723..1730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 1724..1730 +
1622928971.5581672-UTR-H-canaliculatus_F_contig12560:3019..34031622928971.5581672-UTR-H-canaliculatus_F_contig12560:3019..3403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 3020..3403 +
1696845635.0647228-UTR-H-canaliculatus_F_contig12560:3019..34031696845635.0647228-UTR-H-canaliculatus_F_contig12560:3019..3403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12560 3020..3403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.5248604-CDS-H-canaliculatus_F_contig12560:1730..18921622928971.5248604-CDS-H-canaliculatus_F_contig12560:1730..1892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12560 1731..1892 +
1696845635.0434332-CDS-H-canaliculatus_F_contig12560:1730..18921696845635.0434332-CDS-H-canaliculatus_F_contig12560:1730..1892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12560 1731..1892 +
1622928971.5420747-CDS-H-canaliculatus_F_contig12560:2731..30191622928971.5420747-CDS-H-canaliculatus_F_contig12560:2731..3019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12560 2732..3019 +
1696845635.0541816-CDS-H-canaliculatus_F_contig12560:2731..30191696845635.0541816-CDS-H-canaliculatus_F_contig12560:2731..3019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12560 2732..3019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12560.2154.1

>prot_H-canaliculatus_F_contig12560.2154.1 ID=prot_H-canaliculatus_F_contig12560.2154.1|Name=mRNA_H-canaliculatus_F_contig12560.2154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
MQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPPANGPVEIFNQ
ARALVAETHRVRDLAEMIAEKTGSKIDYISNPRNEAAENELDVKNEKFGN
LGVNFKSLDATLLEEVRESSKVFTSNRAWYGLWYGRTPFCFYPFGGGPG*
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mRNA from alignment at H-canaliculatus_F_contig12560:332..3403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12560.2154.1 ID=mRNA_H-canaliculatus_F_contig12560.2154.1|Name=mRNA_H-canaliculatus_F_contig12560.2154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3072bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12560:332..3403+ (Hapterophycus canaliculatus Oshoro5f female)
GTGTACGGGTACGGCAACAGCGGGGGCGAGATCCCGGAGGGGTACATTGA
CGTCACTCTTCCGGGAGACCGACAGCAGAAGATCCTGCACCCTGCCTACC
CGGGATCGGTGTACCACACCACCAAGTGAGAATGCACCCTCTGCCTCCTA
TCGTCGTCGTCCTCATCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGTT
GTTGTTGTTGTTCCATTTTGTGTTGTTGGTGTTGTTGGTGTTGTTGGTGG
TGGTGCTCCTGCTGCTGCGTCTGCTACACTGTTGCTATGCGGCTACTGAC
TGTTTCTCACGAAACCCATTCGGTAAAAAGTGCGGCGCAGTTTCCCACCC
CATTACCCGAGGATCACAGGCGCACGCTTTCGGCTCCGGGGTACGGCGAA
CAAACCACGGCTCACACGTCGAACCAACCTCTCTCCTGCCCTGCCCCCCC
TCCTCCCTCCCTGTTCCAATCGCCGCACCGTTCCTGGGCGGTCCTCCCCT
GTTGTCCGCCACGGCTTCCGCGTCCAGGTGTTTGGATGCGCTTCTGTTCC
AGTTCTACGCCAAGAATGACGGGCTGAGGCTGACGGACCTGCACCAGGGG
ATCGTGTGGGGGACGAACACGCCGCAGACGGTGCGCGACGAGCGGCTCGT
TAACCGGTTCGACTACGACAGCGACTACGGGACGGTGCTCAACCGGTGAG
AGATACGCCGCTTTTGCCGATGTTATTTTTGTGGTTGTTGGTGTCGGTGT
TGGTGTTGGTGCTGGTGTGGGTGTTCCTATCGTTGTCGTCGTTGTTGTTG
CTGTTTGGGTATTGCTTGAGCCTTTGTGGTTTCAGTCCTGTTTCTTGTTT
CCCGGTGTCTGATTCTTTCTTTCGCGTCTCTGCTGCCCCTAGAAGCAACG
GCGATGGTGTCGGGGACCTCGTCGTCCTTCCAATGCTTTCTTTTTATTTC
TCAGACGGGTCCGGCATGGCGGGAGGCTTTCCCAGAGGGCAATCGATTTC
CAAGCACAGACACGCGGGCACGAACTTTCATTTTCCTTGTTTTTTTTTCG
TTTTTTTTTCGTTTTTTGTCTCTCTTACTCTGCTCTCCTCCGGCCAATCC
GCTCTGGCTCCAGCTTGAAGCAGGAAAAAAATCTCGACGATGCCTGTTGA
TGTCCGCTGAGACCCCAAAAGGGGACAAGTCTCGTAGCCGCCCACGTATC
TCTGTCACTATTCCGCACGTCCCAAGGTTTTTGCACGCTTGTCGGCTGCG
CCCATCGAGCGCAGTCGGCCAGAGCATTCCACCACCCACAAACCACCTTA
CGTCACGTGTCTCCGCCGCCTCCCCTCCCCGCGCCGCCAACTTTCCCGAT
TGCGTCCCGCCTCGGATCACCTCTTTCATTTTTGTTTTGTAGGTTCCTGA
TGCAGGCCGCCCTAGACATCCCCATGACCGTGTACGGGACGGGGGGGCAG
ACGCGAGGTTTCATCCACGTGACCGACACGGCCAAGTGCTTGGAGGCGGC
CGTCGTGAACCCCCCGCCGGCGAACGGACCGGTCGAAATCTTCAACCAGG
CGAGAGCTCTAGTTTTCGCATCGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTTGTGGTGATTGTGGAGGTGGTCGTGACGGGGTTGGTGGTGGTATTGGC
GGAGCTCGTTTTTCGGCGAACAGTAGTTGCCGATACAAGGGTGGGACCCG
CGCGCTAGGAGAGGGCTCCGGGTATGTCTGCTGAGATTCCTGGGGCGAGG
GTTTGAGTGCTCTCGCCGGGACGGCAGCGTCGACATTGCCCAGAGGTTAT
CTTGTAGGTCTTGGCGGTGTCCTGGGGTTTATTGCGACTGTCGCTGTGTT
TGGTTGCCGCCGGCTGTTGCGTCTCCTGAGGTTGTACGCGTGGGTGTCCG
ATCGCTTTCGTGTGAGTGTGAATTGATTGTCAGCAGACGCGCCTGACGTA
TTAGTGCACAGCAGTTGCCATGCGTCGCCGTATCTGCGAGGCTAATCGCC
AGGCATCACACCCGCCGGAGCGGTGGGGAAGTCTGACTCGCGCGTGCACC
CAAGAGACCCGCAGAACGTAGTGCCTACTCCGATGATGCAGGTCACCCTC
CCTTGATACTCGGAGTATTCGGTAAATTTCTCACGTCTTGGGACAACTGC
TTGATGCATCGCTTGCTACCCTGGTTGGTAAAAGCGATACACGGAGCTTT
GGGTTCCAAGGCTTGAAGGCCGCGCCTTCTTGAATCCACCCCCTGACTCC
GATGAAACCTCACTTCGTTTAATAGCTGAAGGAACCCGTTGCCTGCAATG
TCCGTCCACGAAGAAAATCGATGTTCCTGAGCATCAACGAGCCACGCACG
AGTCCAGCATGAGGTAACCGCCCCCCGCCCTACCTCCGTTGGTTTCTCAG
GTAGCAGAAACCCATCGTGTGCGAGACCTGGCCGAGATGATCGCAGAAAA
GACAGGGAGCAAGATTGACTACATTTCCAACCCTCGAAACGAGGCAGCCG
AAAACGAGCTGGATGTGAAGAACGAAAAGTTCGGGAACCTGGGGGTCAAC
TTCAAGAGCCTCGATGCGACCCTCCTGGAGGAGGTGAGAGAATCCAGTAA
AGTGTTCACATCAAATCGTGCATGGTATGGGCTGTGGTACGGACGGACGC
CTTTTTGTTTTTATCCTTTTGGGGGGGGCCCAGGGTAAGGGTTGAGATGC
GTTCGGTACACACGCGTGAGATCGTGTTTTCTCTTCTCCTGTTTTGGATG
CTACGTGTTGTTCCACAGGGCGAGACTCGGCCCCGGCAGCATGAATTGCA
AAAGGGGAGAGGGTGAGAGAGTGAGCCCTCTCTTTGCACGGACTGACTAC
CGCGTCGTGACGAAAAAATGGAGGAAAACATAAGGGCACGAGGAATCCCG
TGAAACCTGAGAAGTCCCTCCCCCCCATTATTTCTACGAAAGAAAATGCC
TCTCATACTGTGCATATCTCCAATGAGCCGCGCTCTCCCTCCTCCCCCAG
GTGGGAAAGGAAACACCTCAAAACAAAACGCCTCCGATAACGCCTCTCGC
CTTCTCGCACAATCATTCCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12560:332..3403+

>mRNA_H-canaliculatus_F_contig12560.2154.1 ID=mRNA_H-canaliculatus_F_contig12560.2154.1|Name=mRNA_H-canaliculatus_F_contig12560.2154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12560:332..3403+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGCCGCCCTAGACATCCCCATGACCGTGTACGGGACGGGGGGGCA
GACGCGAGGTTTCATCCACGTGACCGACACGGCCAAGTGCTTGGAGGCGG
CCGTCGTGAACCCCCCGCCGGCGAACGGACCGGTCGAAATCTTCAACCAG
GCGAGAGCTCTAATGCAGGCCGCCCTAGACATCCCCATGACCGTGTACGG
GACGGGGGGGCAGACGCGAGGTTTCATCCACGTGACCGACACGGCCAAGT
GCTTGGAGGCGGCCGTCGTGAACCCCCCGCCGGCGAACGGACCGGTCGAA
ATCTTCAACCAGGCGAGAGCTCTAGTAGCAGAAACCCATCGTGTGCGAGA
CCTGGCCGAGATGATCGCAGAAAAGACAGGGAGCAAGATTGACTACATTT
CCAACCCTCGAAACGAGGCAGCCGAAAACGAGCTGGATGTGAAGAACGAA
AAGTTCGGGAACCTGGGGGTCAACTTCAAGAGCCTCGATGCGACCCTCCT
GGAGGAGGTGAGAGAATCCAGTAAAGTGTTCACATCAAATCGTGCATGGT
ATGGGCTGTGGTACGGACGGACGCCTTTTTGTTTTTATCCTTTTGGGGGG
GGCCCAGGGTAAGTAGCAGAAACCCATCGTGTGCGAGACCTGGCCGAGAT
GATCGCAGAAAAGACAGGGAGCAAGATTGACTACATTTCCAACCCTCGAA
ACGAGGCAGCCGAAAACGAGCTGGATGTGAAGAACGAAAAGTTCGGGAAC
CTGGGGGTCAACTTCAAGAGCCTCGATGCGACCCTCCTGGAGGAGGTGAG
AGAATCCAGTAAAGTGTTCACATCAAATCGTGCATGGTATGGGCTGTGGT
ACGGACGGACGCCTTTTTGTTTTTATCCTTTTGGGGGGGGCCCAGGGTAA
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