mRNA_H-canaliculatus_F_contig102.216.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig102.216.1
Unique NamemRNA_H-canaliculatus_F_contig102.216.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig102.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig102contigH-canaliculatus_F_contig102:36138..37933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size958
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig102.216.1prot_H-canaliculatus_F_contig102.216.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig102 36284..37877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928648.1652114-UTR-H-canaliculatus_F_contig102:36137..362831622928648.1652114-UTR-H-canaliculatus_F_contig102:36137..36283Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 36138..36283 -
1696845512.2247808-UTR-H-canaliculatus_F_contig102:36137..362831696845512.2247808-UTR-H-canaliculatus_F_contig102:36137..36283Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 36138..36283 -
1622928648.213891-UTR-H-canaliculatus_F_contig102:37877..379331622928648.213891-UTR-H-canaliculatus_F_contig102:37877..37933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 37878..37933 -
1696845512.253296-UTR-H-canaliculatus_F_contig102:37877..379331696845512.253296-UTR-H-canaliculatus_F_contig102:37877..37933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig102 37878..37933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928648.182394-CDS-H-canaliculatus_F_contig102:36283..368111622928648.182394-CDS-H-canaliculatus_F_contig102:36283..36811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 36284..36811 -
1696845512.2341354-CDS-H-canaliculatus_F_contig102:36283..368111696845512.2341354-CDS-H-canaliculatus_F_contig102:36283..36811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 36284..36811 -
1622928648.1975782-CDS-H-canaliculatus_F_contig102:37649..378771622928648.1975782-CDS-H-canaliculatus_F_contig102:37649..37877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 37650..37877 -
1696845512.244542-CDS-H-canaliculatus_F_contig102:37649..378771696845512.244542-CDS-H-canaliculatus_F_contig102:37649..37877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig102 37650..37877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig102.216.1

>prot_H-canaliculatus_F_contig102.216.1 ID=prot_H-canaliculatus_F_contig102.216.1|Name=mRNA_H-canaliculatus_F_contig102.216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=252bp
MFAASRWAAGPERLSKLWSPCEVADFNRRRPTAQQTSPLTRRFASHLWVT
NSTSMTTPVRIIAEYDFHNVIFCREQHFTTKQTIAFREIALSVFETAIVN
GKLQPGEAFEAFTHRVLALAGAEEAGTNATGTIFMAAKCGSPLPCKSGAS
AAASGETADPGQGGGSSDSASATGNSGVSDGVGDGEGGESEFSVGDVGAI
TKFVAQGFYRNFKLYRMCFQHEQRCCRETRQVQVETPLEIPPLHEGAESN
S*
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mRNA from alignment at H-canaliculatus_F_contig102:36138..37933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig102.216.1 ID=mRNA_H-canaliculatus_F_contig102.216.1|Name=mRNA_H-canaliculatus_F_contig102.216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1796bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:36138..37933- (Hapterophycus canaliculatus Oshoro5f female)
AGCAAAATGTTAATGCTGCTGGAAATGCTAATGCTGCTCCATGCGGTTTG
TAAATCATGTTCGCAGCTTCACGATGGGCGGCTGGTCCAGAGCGGCTCTC
TAAATTATGGTCACCTTGTGAAGTTGCAGATTTTAATAGGAGAAGGCCTA
CCGCCCAACAAACGTCGCCTTTGACCAGGCGTTTCGCGAGCCACTTGTGG
GTGACTAACTCTACGAGCATGACCACCCCGGTTAGAATCATCGCGGAGTA
CGATTTCCACAACGTCATCTTCTGCAGAGAGCAGGTAGACGAACAAACCC
TGCGCTCGAGGAAGCAGTTCAAGTGTAAATTTACAGTAGAAAAAGAGATA
GGGCCTTGCAAGTCGCCGAGCGCTGGCAGCGCTGGCACTTGGTAGAGCTA
TTTGTAATAACACGACGAAAGTTGTTTCTGCCCCTTAGGATGATGACTTG
AGTGATTTCGAAGCCACCCGCTAACTTTCTCGACGTATAAGAAATAAACA
GGGGTTCGTGCTCCAGACGAAATACTTATCTCTCAAAGGTCTTTTGCTCT
CAGCAAAAAGGGAGGGATGATAATTGATGGCTAACACATCCCGGTGGGAT
CCGTCCTGAGTCCTACGATGCCAACAGCGCTCTTTCGACAATACTTTCCC
GGCCCTTACCCATTCACCCTTAGATATAGGTCTATCCCCATCTCTTCGAA
CCCCACGTGGAACGACGATGTTCCGTTAGTGCGCGATCCGGCCTACAAAA
CGCCAACGTATCGATATGTTCTCCGCTCGTAGTAACCGCCTGTGCAGTGC
ATGAAGGAACCCTGTGCAAAGTTGAGGTCGACGATAATTGCGCCCGGAGA
AAGTCTTCGGGGACGAGCCGCATCTCTCTCAAGCATCAGGCAGGATACTT
GTCGTCAGGAGAAGATCGGCGACGGTCATGAAACTGGTACAACTGCTGAA
GCAAACCCTAACTTTCAAAGTAGGAAAAGAAGCACGCCAATCCTTAAGAC
TACAGAGCATGCTGCCAGTCGAGTGGACCATGAATAACTTTGACACCGTA
TGCTCAGTGGCATGCGATCGATGCACACCTATCCCTTGTACACCTGTCAC
CGACGTCGCGTATCATTCGCAGCACTTCACCACCAAGCAAACAATCGCTT
TTCGTGAAATAGCACTGAGCGTCTTCGAGACAGCCATTGTAAACGGCAAG
CTTCAGCCCGGTGAAGCATTCGAAGCATTCACCCACCGGGTTCTCGCGCT
TGCCGGGGCAGAGGAGGCGGGCACGAATGCGACCGGGACCATTTTCATGG
CAGCAAAATGTGGCAGCCCGCTTCCTTGCAAGAGTGGCGCTTCTGCGGCT
GCGAGTGGAGAAACGGCTGACCCTGGTCAAGGAGGTGGTAGCAGCGATAG
TGCTTCGGCGACTGGGAATAGCGGAGTCAGTGATGGGGTAGGCGACGGCG
AAGGCGGCGAGTCGGAGTTTTCTGTGGGCGATGTCGGTGCAATCACGAAG
TTCGTCGCGCAGGGGTTCTACCGCAACTTTAAGCTGTACCGGATGTGCTT
CCAGCACGAGCAAAGATGTTGTCGAGAGACTAGGCAGGTTCAGGTGGAGA
CACCCCTTGAAATACCGCCACTGCACGAGGGGGCCGAATCCAACTCATAG
AACGCGGCGAAGTCGACGTCTGACTCACTCGACACGGTTGAAGACGAAGC
GACTGTACGACGACTTCGGGGCCTGGCTCGTTCTCTTCCACGCATGCACC
GTCCGCTGTTCATACTTTGAACCGAAAATCAAATTTTCAACCGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig102:36138..37933-

>mRNA_H-canaliculatus_F_contig102.216.1 ID=mRNA_H-canaliculatus_F_contig102.216.1|Name=mRNA_H-canaliculatus_F_contig102.216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1512bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:36138..37933- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCAGCTTCACGATGGGCGGCTGGTCCAGAGCGGCTCTCTAAATT
ATGGTCACCTTGTGAAGTTGCAGATTTTAATAGGAGAAGGCCTACCGCCC
AACAAACGTCGCCTTTGACCAGGCGTTTCGCGAGCCACTTGTGGGTGACT
AACTCTACGAGCATGACCACCCCGGTTAGAATCATCGCGGAGTACGATTT
CCACAACGTCATCTTCTGCAGAGAGCAGATGTTCGCAGCTTCACGATGGG
CGGCTGGTCCAGAGCGGCTCTCTAAATTATGGTCACCTTGTGAAGTTGCA
GATTTTAATAGGAGAAGGCCTACCGCCCAACAAACGTCGCCTTTGACCAG
GCGTTTCGCGAGCCACTTGTGGGTGACTAACTCTACGAGCATGACCACCC
CGGTTAGAATCATCGCGGAGTACGATTTCCACAACGTCATCTTCTGCAGA
GAGCAGCACTTCACCACCAAGCAAACAATCGCTTTTCGTGAAATAGCACT
GAGCGTCTTCGAGACAGCCATTGTAAACGGCAAGCTTCAGCCCGGTGAAG
CATTCGAAGCATTCACCCACCGGGTTCTCGCGCTTGCCGGGGCAGAGGAG
GCGGGCACGAATGCGACCGGGACCATTTTCATGGCAGCAAAATGTGGCAG
CCCGCTTCCTTGCAAGAGTGGCGCTTCTGCGGCTGCGAGTGGAGAAACGG
CTGACCCTGGTCAAGGAGGTGGTAGCAGCGATAGTGCTTCGGCGACTGGG
AATAGCGGAGTCAGTGATGGGGTAGGCGACGGCGAAGGCGGCGAGTCGGA
GTTTTCTGTGGGCGATGTCGGTGCAATCACGAAGTTCGTCGCGCAGGGGT
TCTACCGCAACTTTAAGCTGTACCGGATGTGCTTCCAGCACGAGCAAAGA
TGTTGTCGAGAGACTAGGCAGGTTCAGGTGGAGACACCCCTTGAAATACC
GCCACTGCACGAGGGGGCCGAATCCAACTCATAGCACTTCACCACCAAGC
AAACAATCGCTTTTCGTGAAATAGCACTGAGCGTCTTCGAGACAGCCATT
GTAAACGGCAAGCTTCAGCCCGGTGAAGCATTCGAAGCATTCACCCACCG
GGTTCTCGCGCTTGCCGGGGCAGAGGAGGCGGGCACGAATGCGACCGGGA
CCATTTTCATGGCAGCAAAATGTGGCAGCCCGCTTCCTTGCAAGAGTGGC
GCTTCTGCGGCTGCGAGTGGAGAAACGGCTGACCCTGGTCAAGGAGGTGG
TAGCAGCGATAGTGCTTCGGCGACTGGGAATAGCGGAGTCAGTGATGGGG
TAGGCGACGGCGAAGGCGGCGAGTCGGAGTTTTCTGTGGGCGATGTCGGT
GCAATCACGAAGTTCGTCGCGCAGGGGTTCTACCGCAACTTTAAGCTGTA
CCGGATGTGCTTCCAGCACGAGCAAAGATGTTGTCGAGAGACTAGGCAGG
TTCAGGTGGAGACACCCCTTGAAATACCGCCACTGCACGAGGGGGCCGAA
TCCAACTCATAG
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