mRNA_H-canaliculatus_F_contig12549.2147.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12549.2147.1
Unique NamemRNA_H-canaliculatus_F_contig12549.2147.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12549.2147.1 vs. uniprot
Match: A0A6H5L4U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U3_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 7.270e-73
Identity = 116/132 (87.88%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:   40 KVMRAFRQQAHKLQTDLSRHFPYVVPVDPLVLAKELGPKSNLGRLNSAMKNIGRNVKNSAAVARERINAGMNGKHVDDGLVYYKQVVAELCFECQVFDSWFVHLQDQMAKNDTDEMDDLLVELHLVGSFMRE 435
            +VMR FRQQAHKLQTDLSRHFPYVV VDPL LAKELGPKSNLGRLNS MKNIGRN+KNSA VA ERI AG+NGKHVDDGL YYKQVV+ELC ECQVFDSWFVHLQDQMAKNDT+EMD+LLVELHLV SFMRE
Sbjct:  313 EVMRTFRQQAHKLQTDLSRHFPYVVQVDPLGLAKELGPKSNLGRLNSVMKNIGRNMKNSAVVAVERIGAGINGKHVDDGLAYYKQVVSELCSECQVFDSWFVHLQDQMAKNDTEEMDELLVELHLVSSFMRE 444
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BLAST of mRNA_H-canaliculatus_F_contig12549.2147.1 vs. uniprot
Match: D7G2C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C1_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 5.540e-61
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:   40 KVMRAFRQQAHKLQTDLSRHFPYVVPVDPLVLAKELGPKSNLGRLNSAMKNIGRNVKNSAAVARERINAGMNGKHVDDGLVYYKQVVAELCFECQVFDSWFVHLQDQMAKN 372
            +VMR FRQQAHKLQTDLSRHFPYVV VDPL LAKELGPKSNLGRLNS MKNIGRNVK+SA VA ERI AG+NGKHVDDGL YYKQVV+ELC ECQVFDSWFVHLQDQMAKN
Sbjct:  190 EVMRTFRQQAHKLQTDLSRHFPYVVQVDPLGLAKELGPKSNLGRLNSVMKNIGRNVKHSAVVAVERIGAGINGKHVDDGLAYYKQVVSELCSECQVFDSWFVHLQDQMAKN 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12549.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4U3_9PHAE7.270e-7387.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C1_ECTSI5.540e-6188.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12549contigH-canaliculatus_F_contig12549:131..2345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size435
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12549.2147.1prot_H-canaliculatus_F_contig12549.2147.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12549 131..2345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.210777-CDS-H-canaliculatus_F_contig12549:130..2721622928970.210777-CDS-H-canaliculatus_F_contig12549:130..272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 131..272 +
1696845634.4491782-CDS-H-canaliculatus_F_contig12549:130..2721696845634.4491782-CDS-H-canaliculatus_F_contig12549:130..272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 131..272 +
1622928970.2227895-CDS-H-canaliculatus_F_contig12549:889..10081622928970.2227895-CDS-H-canaliculatus_F_contig12549:889..1008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 890..1008 +
1696845634.4678032-CDS-H-canaliculatus_F_contig12549:889..10081696845634.4678032-CDS-H-canaliculatus_F_contig12549:889..1008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 890..1008 +
1622928970.2369373-CDS-H-canaliculatus_F_contig12549:1569..16811622928970.2369373-CDS-H-canaliculatus_F_contig12549:1569..1681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 1570..1681 +
1696845634.4838057-CDS-H-canaliculatus_F_contig12549:1569..16811696845634.4838057-CDS-H-canaliculatus_F_contig12549:1569..1681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 1570..1681 +
1622928970.2521377-CDS-H-canaliculatus_F_contig12549:2283..23451622928970.2521377-CDS-H-canaliculatus_F_contig12549:2283..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 2284..2345 +
1696845634.497069-CDS-H-canaliculatus_F_contig12549:2283..23451696845634.497069-CDS-H-canaliculatus_F_contig12549:2283..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12549 2284..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12549.2147.1

>prot_H-canaliculatus_F_contig12549.2147.1 ID=prot_H-canaliculatus_F_contig12549.2147.1|Name=mRNA_H-canaliculatus_F_contig12549.2147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=145bp
PPPFPSPCLPPVTKVMRAFRQQAHKLQTDLSRHFPYVVPVDPLVLAKELG
PKSNLGRLNSAMKNIGRNVKNSAAVARERINAGMNGKHVDDGLVYYKQVV
AELCFECQVFDSWFVHLQDQMAKNDTDEMDDLLVELHLVGSFMRE
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mRNA from alignment at H-canaliculatus_F_contig12549:131..2345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12549.2147.1 ID=mRNA_H-canaliculatus_F_contig12549.2147.1|Name=mRNA_H-canaliculatus_F_contig12549.2147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2215bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12549:131..2345+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCCCCCTTTTCCCTCTCCGTGTTTGCCCCCCGTCACGAAGGTGATGCG
GGCGTTTCGGCAGCAGGCCCACAAGCTGCAGACCGATTTGTCGCGACACT
TCCCCTACGTCGTGCCAGTGGACCCTCTCGTTTTGGCCAAAGGTACCCCC
CCCTCCCCCCCCACCCCGCCACCCGTCCATGCACCCGTTGCGGAGAAGAC
GGTCGGTCTTGAATGGCTTTAGGCCTTCCTCCGTGTGCGTTCGCCACCCC
CGTGGTAGGGGTGATGAAGCAGCGGCTAGGTTTGCTGGCCGACCCGACGT
TTGCTCTCCACCTGTCCAATGCACCCCGGGGGGATGGGAGAATAGAAACG
GACAGAGGGGAGAACTAGAGTTCACCTGCCTGTCCTGTGGGTCGGGTGGT
TTGGTTTTCGTTTTTGCCTCGGCTCGCCGGCTTCGTGATGTTCGCCGAAC
GAATGTTTCGAATGCTCTCCCCCCCCCCCCCCCAACGACACATACACCCA
GCAACGAGAGAGAGAGACTGTACCTTTCGCGCGTTCGTCGCTTGACCCAC
TTGTTTCTGTCTTGCTTCGTTGCTGCGGGCCCTCGTCCCGCCCTGTATTA
GCTGTGCTTGGCTCGCCTCCTCCACCTCGCCACCGATGGATCACGTCCGA
CTCCCGACCCTCTCCTTCCCTCCTCTGCCCCCGCCCCGCCGTTTCGCTCG
GCGGCAAACCGCTCGCGCTCTCTTCGGTGCCGCGTGACCTGCCTCGACCG
GTCGGGCAGAGCTGGGACCGAAGTCCAACCTCGGCCGACTGAACAGCGCG
ATGAAGAACATCGGCCGCAACGTGAAAAACTCGGCCGCTGTGGCGAGGGA
GAGGATCAATGCGGGCATGAACGGCAAGGTGCGTCCTCCGTGCGACCGGC
CGGGTCCACGCCGTCTGCTTTCTTGTTCGTGTGGGCGGGCGGGCTGGCGA
GCTTGAAGGCGCGGCGAGCGCGCCTCTGTCCCCGCCCACTCGTGTGCGCG
TGTGTTTGCGCAAGACGACGGGTGCGTTCGTGCGTGGATGCCTCGCGGTG
GACGGGGGGGGGGGGAGAGGGGCGAGTGGGACGGCCTGGGGCGATGCACC
GGTGTTCGTTCTCGCGTCTCCCGCTTGAAGCGACGGCGGGAGAGGGGTGA
AACCCTGTCGGCGGAGCCGAGAAAGACGAATCCACACACACAGCACCGAA
AGCTCTCAAAGAATCAAACGGTGACGTCGGAGAGCGCTTTTCTTTCTGAG
CGATGGTCTCTCCCCTCTTTCTATCCCCATAACCTCCGCTTGCCCCCCCC
CCCCCGCCCCCGCCCCCGCTCCCTGCGCTTCCGTTTTTTCTCCTCCGGTG
TCCGGGTCGGCGTCCGTATCGGTGCCCGTCTCTGCTTCGCCCCATACCCG
TCGCGTGCCGCTCTCAACTTCCGCCGCGACCTCCCGAAGCACGTGGACGA
CGGCCTGGTGTACTACAAGCAGGTGGTGGCCGAGCTGTGCTTTGAGTGCC
AGGTCTTCGACTCGTGGTTCGTCCACCTGCAGGACCAGATGGCGAAGAAC
GGTGAGTCTGGCTTCTGGAAGGCGCCATCCGCTGCATGCGCAGAAACGCC
CCCGGTGCAGCGCGCCCTTTGCTGCCGTGTACTTCATTTTTTTTTTTTTT
TTTTTTTGGGGATCNNNNNNNNNNTTATTGGAGGTCCGTTTCGTCTTTTG
GGGGTGCCACCAGCAGCAGGACGAGAGGCGGAACGGGGGGGGGGCGCCCT
TTGCGGCCGTGTACTTCGTTTTTTTTTTTTTTCTTGTGGGGGAGCCGGGA
AAACGGCGCCGGAACCGCCATCGATACGTAGTCCTCGCCGATCAGTCCCT
CGTGTCCTGGGAGATACGCTCTCCTGCGAAGCGGACGAAAATACATCTTT
TGTCTTCATTCGGCGTTTTAGCTGGCCCCCCTCTCCTCGCCCCTGTGCTG
GGCGTAATGTGAAAGTGTCCATGCCTTTCTTCGAATCCTTCTTCCCCTCT
GCGTTGTGCCCGGGGGATCGACGGAAGGGCGAGAGGAAAGGAAAGGGCCG
CGGTTCCTGCCCGCTTGACCCCTCGCCGGTTTTTGTGTTGTTCATGTTGA
TGTTGCTGGTCGTCCCCCGCTGACGATGGATGCGTCGCCCGTTTCGCCGC
CAGACACGGACGAGATGGACGACCTGCTGGTCGAGCTACACCTGGTGGGG
AGCTTCATGCGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12549:131..2345+

>mRNA_H-canaliculatus_F_contig12549.2147.1 ID=mRNA_H-canaliculatus_F_contig12549.2147.1|Name=mRNA_H-canaliculatus_F_contig12549.2147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12549:131..2345+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCCCCCTTTTCCCTCTCCGTGTTTGCCCCCCGTCACGAAGGTGATGCG
GGCGTTTCGGCAGCAGGCCCACAAGCTGCAGACCGATTTGTCGCGACACT
TCCCCTACGTCGTGCCAGTGGACCCTCTCGTTTTGGCCAAAGCCTCCCCC
TTTTCCCTCTCCGTGTTTGCCCCCCGTCACGAAGGTGATGCGGGCGTTTC
GGCAGCAGGCCCACAAGCTGCAGACCGATTTGTCGCGACACTTCCCCTAC
GTCGTGCCAGTGGACCCTCTCGTTTTGGCCAAAGAGCTGGGACCGAAGTC
CAACCTCGGCCGACTGAACAGCGCGATGAAGAACATCGGCCGCAACGTGA
AAAACTCGGCCGCTGTGGCGAGGGAGAGGATCAATGCGGGCATGAACGGC
AAGAGCTGGGACCGAAGTCCAACCTCGGCCGACTGAACAGCGCGATGAAG
AACATCGGCCGCAACGTGAAAAACTCGGCCGCTGTGGCGAGGGAGAGGAT
CAATGCGGGCATGAACGGCAAGCACGTGGACGACGGCCTGGTGTACTACA
AGCAGGTGGTGGCCGAGCTGTGCTTTGAGTGCCAGGTCTTCGACTCGTGG
TTCGTCCACCTGCAGGACCAGATGGCGAAGAACGCACGTGGACGACGGCC
TGGTGTACTACAAGCAGGTGGTGGCCGAGCTGTGCTTTGAGTGCCAGGTC
TTCGACTCGTGGTTCGTCCACCTGCAGGACCAGATGGCGAAGAACGACAC
GGACGAGATGGACGACCTGCTGGTCGAGCTACACCTGGTGGGGAGCTTCA
TGCGGGAGACACGGACGAGATGGACGACCTGCTGGTCGAGCTACACCTGG
TGGGGAGCTTCATGCGGGAG
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