mRNA_H-canaliculatus_F_contig12541.2144.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI) HSP 1 Score: 349 bits (895), Expect = 1.020e-115 Identity = 190/215 (88.37%), Postives = 199/215 (92.56%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV+ +QQFV VMNDELVEIMGAEQAPLARRTDGKPTV+LLAGLQGTGKTTAAAKLAKYL+QEEEPKKVLLVAGD+YRPAAIDQLI+LGKRIDVEVFSMGQGVDPVEITKAG+ERAVEG FDTVIVDTAGRQVV ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVG+GEK+
Sbjct: 161 GVTAKQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAKYLQQEEEPKKVLLVAGDVYRPAAIDQLISLGKRIDVEVFSMGQGVDPVEITKAGLERAVEGEFDTVIVDTAGRQVVDDTLMTELKDIQVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGIGEKM 375
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA) HSP 1 Score: 257 bits (657), Expect = 9.790e-80 Identity = 145/242 (59.92%), Postives = 180/242 (74.38%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRT-DGKPTVVLLAGLQGTGKTTAAAKLAKYLKQE-------EEPK-------------------KVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV+P+QQFVK+M DELV++MG++QAPLAR T +G+P V+LLAGLQG GKTTAAAKLAK+ ++ EEP+ KVLLVAGD+YRPAAI+QL LG+RI EVF+ G+ VDPV+I + G++ A +GGFD VIVDTAGRQV+ A E DEVLLVVDAMTGQEAATL + FNE++GITGA+LTK+DGD+RGG+ALSVQGVS +PIKFVGVGE++
Sbjct: 126 GVTPDQQFVKIMYDELVKVMGSQQAPLARSTKEGEPVVILLAGLQGAGKTTAAAKLAKFCQERGAGVAPAEEPQPEMKEGEVWTPPQREGPPGKVLLVAGDVYRPAAIEQLQRLGERIGAEVFAPGRDVDPVDIARGGVQYARDGGFDAVIVDTAGRQVIDEKLMDELVKVKGACEPDEVLLVVDAMTGQEAATLTAAFNERVGITGAILTKLDGDSRGGSALSVQGVSGRPIKFVGVGERI 367
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR) HSP 1 Score: 251 bits (642), Expect = 1.260e-78 Identity = 138/215 (64.19%), Postives = 166/215 (77.21%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV P Q +K+M++EL EIMG +QAPLA+R+DG+PTVVLLAGLQG GKTTAAAKLA Y +++ + V+L+AGD+YRPAAIDQL TLG I+V+VFSMG DP +I + GIE+ E DT+IVDTAGRQV+ S+ DE LLVVDAMTGQEAATL FNE++GITGA+LTK+DGDTRGGAALSVQ VS PIKF+GVGEKV
Sbjct: 68 GVDPGQMLIKIMHEELTEIMGKDQAPLAKRSDGQPTVVLLAGLQGAGKTTAAAKLALYCLKDK--RSVMLIAGDVYRPAAIDQLKTLGDMINVDVFSMGTDADPRDIIRKGIEKGKENKIDTLIVDTAGRQVIDAKLMKELKDVKDISKPDETLLVVDAMTGQEAATLTRSFNEEVGITGAILTKLDGDTRGGAALSVQQVSGAPIKFIGVGEKV 280
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR) HSP 1 Score: 248 bits (632), Expect = 2.750e-77 Identity = 136/215 (63.26%), Postives = 164/215 (76.28%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV P Q VK+M++EL +IMG+ QAPLA RTDG+PTVVLLAGLQG GKTTAAAKLA Y +EE + V+++A D+YRPAAIDQL TLGK I+V+VF MG V+P EI + G++ +T+IVDTAGRQV+ S+ADE LLVVDAMTGQEAATL FN+++GITGA+LTK+DGDTRGGAALSVQ VS PIKF+GVGEKV
Sbjct: 52 GVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLALYCLKEE--RSVMMIAADVYRPAAIDQLKTLGKSIEVDVFQMGTDVNPREIVRKGLQEGKTRKINTIIVDTAGRQVIDAKLMKELKDIKSVSKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQQVSGSPIKFIGVGEKV 264
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A0G4GPH7_VITBC (SRP54 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GPH7_VITBC) HSP 1 Score: 246 bits (628), Expect = 3.650e-76 Identity = 141/234 (60.26%), Postives = 167/234 (71.37%), Query Frame = 1
Query: 4 VSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEE----------------------EPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGE 600
V+P QQFVK++ DELV+IMG ++AP+A +PTV+LLAGLQG GKTTAAAKLA YL+ + +P+KVLLVA D+YRPAAIDQL LG+R+ EVF+MGQ VDPV+I K G+ A E G+DTVIVDTAGRQVV A DEVLLVVDAMTGQEAA L FNE+IGI+GA+LTK+DGDTRGG+ALSV+GVS KPIKFVGVGE
Sbjct: 69 VNPSQQFVKILYDELVDIMGGDEAPIATSATDQPTVLLLAGLQGAGKTTAAAKLALYLQTPQTRLDASGDAEGGEGEGGKGTMTKPRKVLLVAADVYRPAAIDQLQILGERVGCEVFTMGQDVDPVDIVKQGVAYAKEQGYDTVIVDTAGRQVVDDALMAELKRIKEAVPPDEVLLVVDAMTGQEAALLTQTFNEQIGISGAILTKLDGDTRGGSALSVRGVSGKPIKFVGVGE 302
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: UPI00034547B1 (signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00034547B1) HSP 1 Score: 242 bits (617), Expect = 1.030e-74 Identity = 137/216 (63.43%), Postives = 169/216 (78.24%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGK-PTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGR----QVVASEAD---------EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GVSP+QQFVK++NDELV++MG APL + DG PT+VL+AGLQGTGKTTAAAKLA +L+++ KK LLVAGDIYRPAAIDQL TLG++ID+ VF +G+ DPVEI + G+ +A + GFDTVIVDTAGR Q + +E + E LLVVDAMTGQEAATL F+ +IG+TGA+LTK+DGDTRGGAALSV+ VS +PIKF+G GEKV
Sbjct: 67 GVSPDQQFVKIVNDELVKVMGEANAPLNQAADGTGPTIVLMAGLQGTGKTTAAAKLALFLRKQS--KKTLLVAGDIYRPAAIDQLKTLGEQIDIPVFDLGK-TDPVEIARQGVAKARDEGFDTVIVDTAGRLQIDQTMMAELEKIKTTINPHETLLVVDAMTGQEAATLTREFHNRIGVTGAILTKLDGDTRGGAALSVRQVSGQPIKFIGTGEKV 279
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: Q111T7_TRIEI (Signal recognition particle protein n=19 Tax=Oscillatoriales TaxID=1150 RepID=Q111T7_TRIEI) HSP 1 Score: 241 bits (615), Expect = 1.670e-74 Identity = 132/215 (61.40%), Postives = 164/215 (76.28%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV P+QQF+K+++DEL +IMG APLA+ D PT+VL+AGLQGTGKTTA+AKLA +L++E + LLVA D+YRPAAIDQL+TLGK+IDV VF +G +DPVEI + G+E+A G D VI+DTAGR + A + E LLVVDAMTGQEAATL FN++IGITGA+LTKMDGDTRGGAALSV+ +S +PIKF+GVGEKV
Sbjct: 67 GVRPDQQFIKIVHDELAQIMGESNAPLAK-ADQPPTIVLMAGLQGTGKTTASAKLALHLRKEN--RSALLVATDVYRPAAIDQLVTLGKQIDVPVFELGTDIDPVEIAQKGLEKAKADGIDIVIIDTAGRLQIDQDMMAELARIKAAVKPQETLLVVDAMTGQEAATLTRTFNDQIGITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKV 278
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A0G4FBS1_9ALVE (SRP54 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBS1_9ALVE) HSP 1 Score: 244 bits (622), Expect = 2.040e-74 Identity = 131/217 (60.37%), Postives = 163/217 (75.12%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEP--KKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVVASEA-------------DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV+ +QQF K++ DE+ E++G A LARR DG+PTV+LLAGLQGTGKTT A+KLA Y ++E+P KKVLLVA D+YRPAAIDQL+T+G + + V++ G +DPV I + +E+A GFDTV+VDTAGRQ + + DE LLVVDAMTGQEAA L F+E+IGITGAVLTK+DGDTRGGAALSV+GVS KPIKF GVGE+V
Sbjct: 135 GVTAQQQFFKLVKDEIQEVLGGSDASLARRVDGRPTVILLAGLQGTGKTTFASKLAYYCAKKEDPARKKVLLVAADVYRPAAIDQLVTMGGKTNTTVYAPGADIDPVRIAREAVEKAKNEGFDTVVVDTAGRQAIDEDLMDELARIKNTVKPDETLLVVDAMTGQEAAALTRQFDERIGITGAVLTKLDGDTRGGAALSVRGVSGKPIKFAGVGERV 351
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: K9EZ64_9CYAN (Signal recognition particle protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=K9EZ64_9CYAN) HSP 1 Score: 241 bits (615), Expect = 2.150e-74 Identity = 134/215 (62.33%), Postives = 165/215 (76.74%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV+P+QQF+K++ DELV +MG PLA + KPTVVL+AGLQGTGKTTA+AKLA +L+++E + +LVA D+YRPAA+DQLITLGK+I V VF MG +PV+I KAGI +A E G DTVIVDTAGR + A DEVLLVVDAMTGQEAATL F+E+IGITGA+LTKMDGD+RGGAALS++ +S KPIKF+G+GEKV
Sbjct: 67 GVAPDQQFIKIVYDELVALMGDANEPLAD-VESKPTVVLMAGLQGTGKTTASAKLALHLRKQE--RSAMLVATDVYRPAAVDQLITLGKQIKVPVFEMGTDANPVDIAKAGIAKAQEDGVDTVIVDTAGRLQIDQDMMAELEQIKTAISPDEVLLVVDAMTGQEAATLTQTFHEQIGITGAILTKMDGDSRGGAALSIRQISGKPIKFIGIGEKV 278
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C) HSP 1 Score: 241 bits (615), Expect = 2.320e-74 Identity = 138/215 (64.19%), Postives = 167/215 (77.67%), Query Frame = 1
Query: 1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGR-----QVVASEAD--------EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
GV+P QQF+K++NDELV++MG APLA D PTVVL+AGLQGTGKTTAAAKLA +L++E+ + LLVA D+YRPAA+DQLITLG++IDV VF MG +PVEI + GI +A E G DTVIVDTAGR ++A AD EVLLVVDAMTGQEAA L F+E+IGITGA+LTKMDGD+RGGAALSV+ +S +PIKF+GVGEKV
Sbjct: 67 GVNPGQQFIKIVNDELVKLMGDTNAPLAH-ADTAPTVVLMAGLQGTGKTTAAAKLALHLRKEK--RSTLLVATDVYRPAAVDQLITLGRQIDVPVFEMGTDANPVEIARLGIAKAKEDGIDTVIVDTAGRLQIDPAMMAELADIKTVIQPHEVLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDSRGGAALSVRQISGQPIKFIGVGEKV 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12541.2144.1 >prot_H-canaliculatus_F_contig12541.2144.1 ID=prot_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTback to top mRNA from alignment at H-canaliculatus_F_contig12541:100..3003- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12541.2144.1 ID=mRNA_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2904bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12541:100..3003- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12541:100..3003- >mRNA_H-canaliculatus_F_contig12541.2144.1 ID=mRNA_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12541:100..3003- (Hapterophycus canaliculatus Oshoro5f female)back to top |