mRNA_H-canaliculatus_F_contig12541.2144.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12541.2144.1
Unique NamemRNA_H-canaliculatus_F_contig12541.2144.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.020e-115
Identity = 190/215 (88.37%), Postives = 199/215 (92.56%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV+ +QQFV VMNDELVEIMGAEQAPLARRTDGKPTV+LLAGLQGTGKTTAAAKLAKYL+QEEEPKKVLLVAGD+YRPAAIDQLI+LGKRIDVEVFSMGQGVDPVEITKAG+ERAVEG FDTVIVDTAGRQVV             ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVG+GEK+
Sbjct:  161 GVTAKQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAKYLQQEEEPKKVLLVAGDVYRPAAIDQLISLGKRIDVEVFSMGQGVDPVEITKAGLERAVEGEFDTVIVDTAGRQVVDDTLMTELKDIQVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGIGEKM 375          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 257 bits (657), Expect = 9.790e-80
Identity = 145/242 (59.92%), Postives = 180/242 (74.38%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRT-DGKPTVVLLAGLQGTGKTTAAAKLAKYLKQE-------EEPK-------------------KVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV+P+QQFVK+M DELV++MG++QAPLAR T +G+P V+LLAGLQG GKTTAAAKLAK+ ++        EEP+                   KVLLVAGD+YRPAAI+QL  LG+RI  EVF+ G+ VDPV+I + G++ A +GGFD VIVDTAGRQV+             A E DEVLLVVDAMTGQEAATL + FNE++GITGA+LTK+DGD+RGG+ALSVQGVS +PIKFVGVGE++
Sbjct:  126 GVTPDQQFVKIMYDELVKVMGSQQAPLARSTKEGEPVVILLAGLQGAGKTTAAAKLAKFCQERGAGVAPAEEPQPEMKEGEVWTPPQREGPPGKVLLVAGDVYRPAAIEQLQRLGERIGAEVFAPGRDVDPVDIARGGVQYARDGGFDAVIVDTAGRQVIDEKLMDELVKVKGACEPDEVLLVVDAMTGQEAATLTAAFNERVGITGAILTKLDGDSRGGSALSVQGVSGRPIKFVGVGERI 367          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 251 bits (642), Expect = 1.260e-78
Identity = 138/215 (64.19%), Postives = 166/215 (77.21%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV P Q  +K+M++EL EIMG +QAPLA+R+DG+PTVVLLAGLQG GKTTAAAKLA Y  +++  + V+L+AGD+YRPAAIDQL TLG  I+V+VFSMG   DP +I + GIE+  E   DT+IVDTAGRQV+              S+ DE LLVVDAMTGQEAATL   FNE++GITGA+LTK+DGDTRGGAALSVQ VS  PIKF+GVGEKV
Sbjct:   68 GVDPGQMLIKIMHEELTEIMGKDQAPLAKRSDGQPTVVLLAGLQGAGKTTAAAKLALYCLKDK--RSVMLIAGDVYRPAAIDQLKTLGDMINVDVFSMGTDADPRDIIRKGIEKGKENKIDTLIVDTAGRQVIDAKLMKELKDVKDISKPDETLLVVDAMTGQEAATLTRSFNEEVGITGAILTKLDGDTRGGAALSVQQVSGAPIKFIGVGEKV 280          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR)

HSP 1 Score: 248 bits (632), Expect = 2.750e-77
Identity = 136/215 (63.26%), Postives = 164/215 (76.28%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV P Q  VK+M++EL +IMG+ QAPLA RTDG+PTVVLLAGLQG GKTTAAAKLA Y  +EE  + V+++A D+YRPAAIDQL TLGK I+V+VF MG  V+P EI + G++       +T+IVDTAGRQV+              S+ADE LLVVDAMTGQEAATL   FN+++GITGA+LTK+DGDTRGGAALSVQ VS  PIKF+GVGEKV
Sbjct:   52 GVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLALYCLKEE--RSVMMIAADVYRPAAIDQLKTLGKSIEVDVFQMGTDVNPREIVRKGLQEGKTRKINTIIVDTAGRQVIDAKLMKELKDIKSVSKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQQVSGSPIKFIGVGEKV 264          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A0G4GPH7_VITBC (SRP54 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GPH7_VITBC)

HSP 1 Score: 246 bits (628), Expect = 3.650e-76
Identity = 141/234 (60.26%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    4 VSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEE----------------------EPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGE 600
            V+P QQFVK++ DELV+IMG ++AP+A     +PTV+LLAGLQG GKTTAAAKLA YL+  +                      +P+KVLLVA D+YRPAAIDQL  LG+R+  EVF+MGQ VDPV+I K G+  A E G+DTVIVDTAGRQVV             A   DEVLLVVDAMTGQEAA L   FNE+IGI+GA+LTK+DGDTRGG+ALSV+GVS KPIKFVGVGE
Sbjct:   69 VNPSQQFVKILYDELVDIMGGDEAPIATSATDQPTVLLLAGLQGAGKTTAAAKLALYLQTPQTRLDASGDAEGGEGEGGKGTMTKPRKVLLVAADVYRPAAIDQLQILGERVGCEVFTMGQDVDPVDIVKQGVAYAKEQGYDTVIVDTAGRQVVDDALMAELKRIKEAVPPDEVLLVVDAMTGQEAALLTQTFNEQIGISGAILTKLDGDTRGGSALSVRGVSGKPIKFVGVGE 302          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: UPI00034547B1 (signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00034547B1)

HSP 1 Score: 242 bits (617), Expect = 1.030e-74
Identity = 137/216 (63.43%), Postives = 169/216 (78.24%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGK-PTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGR----QVVASEAD---------EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GVSP+QQFVK++NDELV++MG   APL +  DG  PT+VL+AGLQGTGKTTAAAKLA +L+++   KK LLVAGDIYRPAAIDQL TLG++ID+ VF +G+  DPVEI + G+ +A + GFDTVIVDTAGR    Q + +E +         E LLVVDAMTGQEAATL   F+ +IG+TGA+LTK+DGDTRGGAALSV+ VS +PIKF+G GEKV
Sbjct:   67 GVSPDQQFVKIVNDELVKVMGEANAPLNQAADGTGPTIVLMAGLQGTGKTTAAAKLALFLRKQS--KKTLLVAGDIYRPAAIDQLKTLGEQIDIPVFDLGK-TDPVEIARQGVAKARDEGFDTVIVDTAGRLQIDQTMMAELEKIKTTINPHETLLVVDAMTGQEAATLTREFHNRIGVTGAILTKLDGDTRGGAALSVRQVSGQPIKFIGTGEKV 279          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: Q111T7_TRIEI (Signal recognition particle protein n=19 Tax=Oscillatoriales TaxID=1150 RepID=Q111T7_TRIEI)

HSP 1 Score: 241 bits (615), Expect = 1.670e-74
Identity = 132/215 (61.40%), Postives = 164/215 (76.28%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV P+QQF+K+++DEL +IMG   APLA+  D  PT+VL+AGLQGTGKTTA+AKLA +L++E   +  LLVA D+YRPAAIDQL+TLGK+IDV VF +G  +DPVEI + G+E+A   G D VI+DTAGR  +             A +  E LLVVDAMTGQEAATL   FN++IGITGA+LTKMDGDTRGGAALSV+ +S +PIKF+GVGEKV
Sbjct:   67 GVRPDQQFIKIVHDELAQIMGESNAPLAK-ADQPPTIVLMAGLQGTGKTTASAKLALHLRKEN--RSALLVATDVYRPAAIDQLVTLGKQIDVPVFELGTDIDPVEIAQKGLEKAKADGIDIVIIDTAGRLQIDQDMMAELARIKAAVKPQETLLVVDAMTGQEAATLTRTFNDQIGITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKV 278          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: A0A0G4FBS1_9ALVE (SRP54 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBS1_9ALVE)

HSP 1 Score: 244 bits (622), Expect = 2.040e-74
Identity = 131/217 (60.37%), Postives = 163/217 (75.12%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEP--KKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVVASEA-------------DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV+ +QQF K++ DE+ E++G   A LARR DG+PTV+LLAGLQGTGKTT A+KLA Y  ++E+P  KKVLLVA D+YRPAAIDQL+T+G + +  V++ G  +DPV I +  +E+A   GFDTV+VDTAGRQ +  +              DE LLVVDAMTGQEAA L   F+E+IGITGAVLTK+DGDTRGGAALSV+GVS KPIKF GVGE+V
Sbjct:  135 GVTAQQQFFKLVKDEIQEVLGGSDASLARRVDGRPTVILLAGLQGTGKTTFASKLAYYCAKKEDPARKKVLLVAADVYRPAAIDQLVTMGGKTNTTVYAPGADIDPVRIAREAVEKAKNEGFDTVVVDTAGRQAIDEDLMDELARIKNTVKPDETLLVVDAMTGQEAAALTRQFDERIGITGAVLTKLDGDTRGGAALSVRGVSGKPIKFAGVGERV 351          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: K9EZ64_9CYAN (Signal recognition particle protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=K9EZ64_9CYAN)

HSP 1 Score: 241 bits (615), Expect = 2.150e-74
Identity = 134/215 (62.33%), Postives = 165/215 (76.74%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGRQVV-------------ASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV+P+QQF+K++ DELV +MG    PLA   + KPTVVL+AGLQGTGKTTA+AKLA +L+++E  +  +LVA D+YRPAA+DQLITLGK+I V VF MG   +PV+I KAGI +A E G DTVIVDTAGR  +             A   DEVLLVVDAMTGQEAATL   F+E+IGITGA+LTKMDGD+RGGAALS++ +S KPIKF+G+GEKV
Sbjct:   67 GVAPDQQFIKIVYDELVALMGDANEPLAD-VESKPTVVLMAGLQGTGKTTASAKLALHLRKQE--RSAMLVATDVYRPAAVDQLITLGKQIKVPVFEMGTDANPVDIAKAGIAKAQEDGVDTVIVDTAGRLQIDQDMMAELEQIKTAISPDEVLLVVDAMTGQEAATLTQTFHEQIGITGAILTKMDGDSRGGAALSIRQISGKPIKFIGIGEKV 278          
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C)

HSP 1 Score: 241 bits (615), Expect = 2.320e-74
Identity = 138/215 (64.19%), Postives = 167/215 (77.67%), Query Frame = 1
Query:    1 GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTTAAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQGVDPVEITKAGIERAVEGGFDTVIVDTAGR-----QVVASEAD--------EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGEKV 606
            GV+P QQF+K++NDELV++MG   APLA   D  PTVVL+AGLQGTGKTTAAAKLA +L++E+  +  LLVA D+YRPAA+DQLITLG++IDV VF MG   +PVEI + GI +A E G DTVIVDTAGR      ++A  AD        EVLLVVDAMTGQEAA L   F+E+IGITGA+LTKMDGD+RGGAALSV+ +S +PIKF+GVGEKV
Sbjct:   67 GVNPGQQFIKIVNDELVKLMGDTNAPLAH-ADTAPTVVLMAGLQGTGKTTAAAKLALHLRKEK--RSTLLVATDVYRPAAVDQLITLGRQIDVPVFEMGTDANPVEIARLGIAKAKEDGIDTVIVDTAGRLQIDPAMMAELADIKTVIQPHEVLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDSRGGAALSVRQISGQPIKFIGVGEKV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12541.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN22_ECTSI1.020e-11588.37PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A835YMH5_9STRA9.790e-8059.92SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A2V3IRY4_9FLOR1.260e-7864.19Signal recognition particle protein n=1 Tax=Gracil... [more]
R7QHF1_CHOCR2.750e-7763.26Signal recognition particle SRP54 homolog ffh n=1 ... [more]
A0A0G4GPH7_VITBC3.650e-7660.26SRP54 domain-containing protein n=1 Tax=Vitrella b... [more]
UPI00034547B11.030e-7463.43signal recognition particle protein n=1 Tax=Synech... [more]
Q111T7_TRIEI1.670e-7461.40Signal recognition particle protein n=19 Tax=Oscil... [more]
A0A0G4FBS1_9ALVE2.040e-7460.37SRP54 domain-containing protein n=1 Tax=Chromera v... [more]
K9EZ64_9CYAN2.150e-7462.33Signal recognition particle protein n=8 Tax=Cyanob... [more]
UPI0019F74F5C2.320e-7464.19Signal recognition particle protein n=1 Tax=Leptol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12541contigH-canaliculatus_F_contig12541:100..3003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue2.3e-94
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPFfh, plastid Ffh subunit of the signal recognition particle
Ec32 orthologEc-13_002170.1
Exons4
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12541.2144.1prot_H-canaliculatus_F_contig12541.2144.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12541 100..3003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.790355-CDS-H-canaliculatus_F_contig12541:99..3091622928969.790355-CDS-H-canaliculatus_F_contig12541:99..309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 100..309 -
1696845634.263927-CDS-H-canaliculatus_F_contig12541:99..3091696845634.263927-CDS-H-canaliculatus_F_contig12541:99..309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 100..309 -
1622928969.8107867-CDS-H-canaliculatus_F_contig12541:760..8801622928969.8107867-CDS-H-canaliculatus_F_contig12541:760..880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 761..880 -
1696845634.2786667-CDS-H-canaliculatus_F_contig12541:760..8801696845634.2786667-CDS-H-canaliculatus_F_contig12541:760..880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 761..880 -
1622928969.8273013-CDS-H-canaliculatus_F_contig12541:1679..17851622928969.8273013-CDS-H-canaliculatus_F_contig12541:1679..1785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 1680..1785 -
1696845634.2928164-CDS-H-canaliculatus_F_contig12541:1679..17851696845634.2928164-CDS-H-canaliculatus_F_contig12541:1679..1785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 1680..1785 -
1622928969.8429341-CDS-H-canaliculatus_F_contig12541:2833..30031622928969.8429341-CDS-H-canaliculatus_F_contig12541:2833..3003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 2834..3003 -
1696845634.3107615-CDS-H-canaliculatus_F_contig12541:2833..30031696845634.3107615-CDS-H-canaliculatus_F_contig12541:2833..3003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12541 2834..3003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12541.2144.1

>prot_H-canaliculatus_F_contig12541.2144.1 ID=prot_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
GVSPEQQFVKVMNDELVEIMGAEQAPLARRTDGKPTVVLLAGLQGTGKTT
AAAKLAKYLKQEEEPKKVLLVAGDIYRPAAIDQLITLGKRIDVEVFSMGQ
GVDPVEITKAGIERAVEGGFDTVIVDTAGRQVVASEADEVLLVVDAMTGQ
EAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGVGE
KV
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mRNA from alignment at H-canaliculatus_F_contig12541:100..3003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12541.2144.1 ID=mRNA_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2904bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12541:100..3003- (Hapterophycus canaliculatus Oshoro5f female)
GGCGTGTCGCCCGAGCAACAGTTCGTGAAGGTCATGAACGACGAGCTCGT GGAGATCATGGGCGCGGAGCAGGCGCCCCTCGCCCGGAGGACCGACGGGA AGCCGACCGTGGTGCTGCTGGCCGGGCTCCAGGGGACGGGTAAAACCACG GCCGCCGCCAAGCTCGCAAAGTGGGTACATGGAGTGAAGCGTTTCCTGGT GCACGGTGCACACTTGTGGCACTGTAGTGTTTTTTCCGAGAAAAGTACAG CAGCACCGTAGGAGCGGTTCTTGAGGCAGGTGCGGCGTTCGCGGCGTGGC TCTAGTCTTCTGTTGAATTCCAGACAGGGAGGGGTTCGTTGTTGTTTAGC TGTTTTTGTTGATCTCGCGTTTTTTTTGTGTTTCGTGCGGGCGTGTGTGG CTGTTGGCCGCGAAAGGATCAACCCGTTGCGGCGTTGGTTTCCTCTCCTG CTGGCCGCTGTTTCCCCCCCTGCCCCCCTACCCCCCCCCGCCGCGGGTCA GAAAGATGCGAGAGCGCCCCGTGTGTTGGTGATGTATCTTGGAGGCACGG TAGTCTTTTTGGCAGGAATTACTTGTGTTTTGTGCCGGAAGGGGCTCCGT CTGGACACGCGAGGGATTCCTTCTTCGTCGGCACGAGGGCGCCAAGCGTC GGGAAGGGAGGCCTCGTAGATTGCACAGTGCCCCCCCCCCACCCCCCCTC TTTGTTGTTTCTTGTGGGCTGCCTTGGGGACGTTGGGTTGTATTTAGGAA TGAGTGAGCGATGGTTTGATCCAGATAGTATAATGGAAGCGTTCTTCCTG GAAGACCTAAAAGGGGAGAAAGGGCATGAGTCCCCTGTTTCAAGTACAAA AACGTCGTTCCTGCCCCCCCCCCTTCCTCTCATCCGAGCTTAACCGGAGT TTGAGGCTGCTGTTCCTGCTGTGCAGTCCGCGTATCCCCTTGATCGGAAA GGGAGGGGGCCCCGCATGAGTAGTCCTGCCCCGTCTCGAAAGAGGGGGAG TCCCCGTGTCCAAACATGGTCCCCCGTCTGCCCAAAGAGGCGTTCTCGAC CGAAAGTTAGGATACGACGTGCGCCGGTCGTGGCCGGATGGGCGAAGGCG GGGGACAAGCGAATGCCCCTCCTCCGTCCTCCCTGTCCCCACCCCGCCCA CCCTGACCCTCGGCCTTGCCTCCCCTTCCTCCTCGCGATGGACGGTCGTG AAAAAAACGCCGCGAAAGATACCTGAAGCAGGAGGAGGAGCCCAAGAAGG TCCTGCTGGTGGCCGGAGACATCTACCGACCCGCCGCGATCGACCAGCTG ATCACCCTCGGGAAGAGGATCGATGTGAGGAAGCGGCCCGACCTGTATCG CTTGGCGGTGGTTCACGGCAGAATGCCCCTGTTGAGCGTGGTGCTGGCGG TGGAGTTGCCGTCGGGCGTTTGGGTTGTCGTCATGGGAGTGCGGCTCGTG GCCGGAGTGATTGCGTCTTCGTCTCTGTAGCTTCTGTGGCCGCGTTTGCC ACCGCTTGCACCAGCAACGAGAGTAACATGAAGCGCGTCCTTCATGAGGT CGTGTCAGCTGTCGGCGAAGCAGTTCGATCTCGATTCCTGCTTCTACTTC TTTTTATCTCTCTGGGGGGTGTTCGTGATCGATGGGTTTCATCTCGGTAC CATTTGTGTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCCCTCTTCTCATGGCGT ATCGGAGTCCACTCAAATCACGCGCCCTGCCGCTGGAAGTGTACAAGTTG ACGAGTGAAGCAGAGCTCATGCCGCAGGCTCCATTCCAATTGCCGCAGCG CGGTCGCAGTGTGGAACAAAGCGTTCATGTCGGGCCGTCGCGATGAAACG AAACAGAAGGGCACGCGCGAGGAACACACGTCGGAGAACAACATCTAAGT CGAGAATCGTCGAAAAGGCATCAATCACGCCAAGAACCGTCGAAACACCA ACAGAGGCAATGACCCCACCGCGTCTTTCGTTCCGAAACGAAAAACACTC GCGCGGGCGTTTCGCTCTCCTCGCACCGACCCCGCCCCGCCCCGCCCCAA CCCAACCCAACCCAACCTCACAGGTGGAAGTGTTCTCCATGGGTCAAGGG GTTGATCCGGTCGAGATCACCAAGGCCGGTATCGAGAGGGCCGTCGAGGG CGGCTTCGACACCGTCATCGTCGATACCGCCGGGCGTCAGGTGGTGGACG ACACCCTCATGACCGAGCTCAAGAACATTCAGGCAAGCGCCGGTGCCTGT TGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCC CACGCACACGCACACGCATCCGTGTACACACACGCGCGCGCGGTCGCACA ATGAACACCACTCTACACAACAGCAGTGCGTGCTCTTGTGCGCGGCGGGT GGTATCGTCCGAAGCCGGCTGGATCCGCACAACGAAACCTTCCACATTCG TACCTACGTACCTACGCAAGCACCAACTAGGCGCGCACGCACGCCGGGTT CGACACGCATGCGCAGGCACCCGCCCGCGGGCGGCATCCGTGACAACCGC CCGAGAGAAAACCGCTCACACGCTCACACATACACACACGTACACACACG CACGCACGCACGATACCCGCGCGTCCAAACCTCGCCCCGCGCAGGTGGCG TCGGAAGCCGACGAGGTCCTGCTGGTGGTGGACGCCATGACGGGGCAGGA GGCGGCGACGCTGGCCTCCGTCTTCAACGAGAAGATCGGCATCACGGGCG CCGTGCTCACCAAGATGGACGGAGACACCCGCGGGGGCGCCGCGCTCTCC GTGCAGGGGGTGTCCCAGAAGCCCATCAAGTTCGTCGGCGTCGGGGAGAA GGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12541:100..3003-

>mRNA_H-canaliculatus_F_contig12541.2144.1 ID=mRNA_H-canaliculatus_F_contig12541.2144.1|Name=mRNA_H-canaliculatus_F_contig12541.2144.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12541:100..3003- (Hapterophycus canaliculatus Oshoro5f female)
GGCGTGTCGCCCGAGCAACAGTTCGTGAAGGTCATGAACGACGAGCTCGT
GGAGATCATGGGCGCGGAGCAGGCGCCCCTCGCCCGGAGGACCGACGGGA
AGCCGACCGTGGTGCTGCTGGCCGGGCTCCAGGGGACGGGTAAAACCACG
GCCGCCGCCAAGCTCGCAAAGGCGTGTCGCCCGAGCAACAGTTCGTGAAG
GTCATGAACGACGAGCTCGTGGAGATCATGGGCGCGGAGCAGGCGCCCCT
CGCCCGGAGGACCGACGGGAAGCCGACCGTGGTGCTGCTGGCCGGGCTCC
AGGGGACGGGTAAAACCACGGCCGCCGCCAAGCTCGCAAAATACCTGAAG
CAGGAGGAGGAGCCCAAGAAGGTCCTGCTGGTGGCCGGAGACATCTACCG
ACCCGCCGCGATCGACCAGCTGATCACCCTCGGGAAGAGGATCGATATAC
CTGAAGCAGGAGGAGGAGCCCAAGAAGGTCCTGCTGGTGGCCGGAGACAT
CTACCGACCCGCCGCGATCGACCAGCTGATCACCCTCGGGAAGAGGATCG
ATGTGGAAGTGTTCTCCATGGGTCAAGGGGTTGATCCGGTCGAGATCACC
AAGGCCGGTATCGAGAGGGCCGTCGAGGGCGGCTTCGACACCGTCATCGT
CGATACCGCCGGGCGTCAGGTGGTGGAAGTGTTCTCCATGGGTCAAGGGG
TTGATCCGGTCGAGATCACCAAGGCCGGTATCGAGAGGGCCGTCGAGGGC
GGCTTCGACACCGTCATCGTCGATACCGCCGGGCGTCAGGTGGTGGCGTC
GGAAGCCGACGAGGTCCTGCTGGTGGTGGACGCCATGACGGGGCAGGAGG
CGGCGACGCTGGCCTCCGTCTTCAACGAGAAGATCGGCATCACGGGCGCC
GTGCTCACCAAGATGGACGGAGACACCCGCGGGGGCGCCGCGCTCTCCGT
GCAGGGGGTGTCCCAGAAGCCCATCAAGTTCGTCGGCGTCGGGGAGAAGG
TGGTGGCGTCGGAAGCCGACGAGGTCCTGCTGGTGGTGGACGCCATGACG
GGGCAGGAGGCGGCGACGCTGGCCTCCGTCTTCAACGAGAAGATCGGCAT
CACGGGCGCCGTGCTCACCAAGATGGACGGAGACACCCGCGGGGGCGCCG
CGCTCTCCGTGCAGGGGGTGTCCCAGAAGCCCATCAAGTTCGTCGGCGTC
GGGGAGAAGGTG
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