mRNA_H-canaliculatus_F_contig12530.2140.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12530.2140.1
Unique NamemRNA_H-canaliculatus_F_contig12530.2140.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12530.2140.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.540e-59
Identity = 160/207 (77.29%), Postives = 169/207 (81.64%), Query Frame = 1 
Query:   64 DAGASASRREGKQIDLLLEVESLEPKQLMS-GGRAAPHKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLDLLSQRSLEEELHMLLPVLLAHAPRIRMREVSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDALTATPKGTATRTSHKVSQRAEELVMRLCGLGAIAAAEVRGVL 681
            DAG S SRR+GKQ+DLLLEVESLEPKQLMS GGR +P    S                 XXXXXXXXXXXX   XXXXXXXXX   XXXXXXXX SESLDLLSQRSLEEELHMLLPVLLAHAPR+RMRE SAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDA+ ATP  TATRTSH+VS+RAEELVMRLCGLGAIA+ +VR VL
Sbjct:  234 DAGGSVSRRDGKQMDLLLEVESLEPKQLMSSGGRQSP----SRGVVSRASSPAVGVGAAXXXXXXXXXXXXVEAXXXXXXXXXAVGXXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMRESSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVAATPGITATRTSHRVSRRAEELVMRLCGLGAIASVKVRQVL 436
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BLAST of mRNA_H-canaliculatus_F_contig12530.2140.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.290e-12
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:  526 ESIVLGVCDALTATPKGTATRTSHKVSQRAEELVMRLCGLGAIAAAEVRGVLV 684
            + IVLGVCDA+T TP  TAT TSH VS+RAEELVMRLCGLGA+A+ +VRGVLV
Sbjct:  105 QRIVLGVCDAVTVTPGITATLTSHNVSRRAEELVMRLCGLGAMASVKVRGVLV 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12530.2140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZF6_ECTSI1.540e-5977.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9Q4_9PHAE2.290e-1275.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12530contigH-canaliculatus_F_contig12530:784..3337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIntegrator complex subunit 2
Ec32 orthologEc-19_003130.1
Exons4
Model size684
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12530.2140.1prot_H-canaliculatus_F_contig12530.2140.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12530 796..3337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.3808784-UTR-H-canaliculatus_F_contig12530:783..7951622928969.3808784-UTR-H-canaliculatus_F_contig12530:783..795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12530 784..795 +
1696845634.1001756-UTR-H-canaliculatus_F_contig12530:783..7951696845634.1001756-UTR-H-canaliculatus_F_contig12530:783..795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12530 784..795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.3967042-CDS-H-canaliculatus_F_contig12530:795..9361622928969.3967042-CDS-H-canaliculatus_F_contig12530:795..936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 796..936 +
1696845634.114417-CDS-H-canaliculatus_F_contig12530:795..9361696845634.114417-CDS-H-canaliculatus_F_contig12530:795..936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 796..936 +
1622928969.4189866-CDS-H-canaliculatus_F_contig12530:1495..17161622928969.4189866-CDS-H-canaliculatus_F_contig12530:1495..1716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 1496..1716 +
1696845634.125307-CDS-H-canaliculatus_F_contig12530:1495..17161696845634.125307-CDS-H-canaliculatus_F_contig12530:1495..1716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 1496..1716 +
1622928969.4357898-CDS-H-canaliculatus_F_contig12530:2177..23331622928969.4357898-CDS-H-canaliculatus_F_contig12530:2177..2333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 2178..2333 +
1696845634.1355968-CDS-H-canaliculatus_F_contig12530:2177..23331696845634.1355968-CDS-H-canaliculatus_F_contig12530:2177..2333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 2178..2333 +
1622928969.461269-CDS-H-canaliculatus_F_contig12530:3183..33371622928969.461269-CDS-H-canaliculatus_F_contig12530:3183..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 3184..3337 +
1696845634.1453376-CDS-H-canaliculatus_F_contig12530:3183..33371696845634.1453376-CDS-H-canaliculatus_F_contig12530:3183..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12530 3184..3337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12530.2140.1

>prot_H-canaliculatus_F_contig12530.2140.1 ID=prot_H-canaliculatus_F_contig12530.2140.1|Name=mRNA_H-canaliculatus_F_contig12530.2140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=224bp
MDEEKADADSERGGGEGDAGASASRREGKQIDLLLEVESLEPKQLMSGGR
AAPHKPSSAGAAAGGGGGGAAAAAAAAASAAGVGGGAGGGRGGGGGGGSA
GERRDGGSGGSSESLDLLSQRSLEEELHMLLPVLLAHAPRIRMREVSAAL
LRTRFAPSLLHVSAMNDPLSLESIVLGVCDALTATPKGTATRTSHKVSQR
AEELVMRLCGLGAIAAAEVRGVLV
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mRNA from alignment at H-canaliculatus_F_contig12530:784..3337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12530.2140.1 ID=mRNA_H-canaliculatus_F_contig12530.2140.1|Name=mRNA_H-canaliculatus_F_contig12530.2140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12530:784..3337+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTAGCCGCCATGGACGAAGAAAAGGCCGACGCCGACAGCGAGAGAGG
TGGCGGCGAGGGCGACGCCGGCGCAAGCGCGTCGAGGCGCGAGGGGAAGC
AGATCGACCTCTTGCTCGAGGTGGAATCTCTGGAGCCGAAGCAGCTCATG
TCGGTGAGTGGCCCCGCACTTTCTCTTCTCTGCCCTCTCGCGTGCCTGTG
CGTGCCTGTGCGTGCCTGTGTGTGTGTGTCTATGTGTGTGTCTACGTGTG
TGTGTGCCTGTCTTCATGGATGCGCGTTCCGACTTCAAGCATCGGCCGCC
GCGCCGCACGACTGGCCGACGATAAATCCGCCTTTTTCTCTTTTTCTTCT
TCTCAGCGGCAACGGCATCGCTCGCTTTGCCGCAAAGGCCGAGGCCGCGA
AGCCCTCTATAAAACCCTCTTTGCATACTCCATGCATTCGCACGAACCCA
CGGCCGAACTTTCGCGCGCCCCTGGGCTGGGCTGGGCTGGGCTGGGCGAC
CGATCCTGCGTCTCCCCCCCCCGCAGGTGATCCTGCGCGAGCTGCTGCTT
CTCATGGCCGCTTTCCGCCGAAGCAAAGGCGACGTCATCGCAGTAGACCC
TCCTGCCGCCACCTCCCCGCCGGGGGGCTCCGCGAGCAACGCCGCCCCGT
CCTCGGCGTCCGCCGGCCAGTCGCAGAGCGGCAGCGGCAGCGGCAGCGGT
GGCCAACTGCAGGGCGGAAGAGCCGCCCCGCACAAACCCTCGTCGGCGGG
CGCTGCGGCGGGAGGGGGTGGGGGGGGCGCCGCCGCCGCCGCCGCCGCTG
CTGCTTCTGCGGCAGGGGTTGGCGGTGGTGCAGGGGGAGGGAGGGGCGGG
GGTGGCGGCGGCGGCTCGGCGGGAGAGCGACGAGACGGGGGGAGCGGCGG
TTCGTCGGAGAGTCTGGACTTGCTGAGCCAGAGGTGCGACCCGGTTTTGG
TCGATTTGCGTGTCGGGTCGGGGGTTAGGGCAGCTTTGCGGTCGTTTGTC
TCCGGCGTCGCGGCGTCTTGGCGGCTGCTTCCGGGGGGGGGGGCGGCGGC
AGCGGCGGCGGCGGCAGTGGCGGCGGCGGCGGTTTTGGTGGTGGTGACGC
GATGGACAGTTGTGTACAAGCAGAACATGCGTGCAATTTGTTTTTCGAGA
AACTGGCTCGTTAGACCGGCGTGAGAAATCGACGAGGAATGCACCTGGGT
TGTCGTTCCGCGAACCAGCTCGTGCCAGTCTCAAGCTCAGCTTTCATCGT
GCTGCGTTCCTGCGTGTGGCTCCCCCCCATCTCCGCCAACGACCACAGGG
GTGCTTGCGCCGAAGGCACCCTTACCCGCGTCCGCGTTCGAATCCGAATC
CGAATCCTTGGCCGCTTGCACGCCTCGCTTTTCCCCGCGCACAGGTCGCT
CGAAGAGGAGCTGCACATGCTCCTGCCCGTGCTGCTTGCGCATGCTCCCC
GCATCCGGATGAGGGAGGTGTCGGCGGCGCTGCTGCGCACCCGCTTCGCC
CCGTCCCTGCTGCACGTTTCCGCGATGAATGACCCTCTCAGCCTAGAAAG
GTCGGCCAGGGTCGGGTCGGGGGCGTGTGATACACTTTTTCTTGCGCATT
TCCCGCCATCGTTTCCGAGAGGCTTCTTTTCCTCTTGCGGTTTTTCGCCT
TTCTTCGTCTTTCTTCGCCTTTTTTCGTCTTTCTTTGTCTTTTTCTTCTT
CCCCGTCTTTTTATCGATTTTTCGATTTTTCGATTTTCGATATTTCGACG
TTTTTTTCTTGTTTCCTGTTTTTGCCAGCCCGCGCGTGTGTGTGTTGTGT
CGCCGTTGGGCCCAAGGCGCTGCGTACCTCTTTCGCGTCCTGCGCTTCCA
CGACCAAGTCATGAGACGCATGGGACGTTGCTTCACGGATTGTACCGTAA
GACCGACCCGTCTCGGAGCGTTCCGTATCGTGCCAGGGTCGACGCCCGCC
AACTTGCCGGCCCGCTGCCGCGTGCTTTGCGCTTCGCCTGGATGTGTCAA
AAGAGTGCGCGGCGAGATGCCGTTTCCTGCGACGAAACTGCTCCCGTGCC
TCACCCGTAGGAGGAACAAAACCTTTGGGGGCGCCGCGACCCAAGCCCCC
CCGTCGGGAGGATCCGGCGTGTCTTGTCGCCCTCGTGTCGGTAGTCGCTC
TTCCCGACCTCGCTTTTTGAAACGACCGCCCGTGGTAACGGCGGTGCTCT
TGATTTTCCCACCACCTGTTCGTGTGAGCGAACTTGCCGGCCTTGGCGGC
GTCGCCGTCGCCCGTGTGATCCACCTCAACCGAGTCGACCTTGCTCTCTT
CTGCCTCGCGACGCCGCGCCTGCCGCCGCTGCTGCTGCTGCGCCTGCCCT
TGTGCCCCCTCGCCGCCCTTCTCGCCGCCGCTTCCTTCTCGCCGCTCCAG
CATCGTCTTGGGCGTGTGCGACGCCCTGACCGCTACCCCAAAGGGCACCG
CGACGCGCACGTCCCACAAGGTCTCGCAGCGCGCGGAAGAGCTGGTCATG
CGCCTCTGTGGCCTGGGGGCCATCGCCGCGGCCGAGGTCCGCGGAGTCCT
GGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12530:784..3337+

>mRNA_H-canaliculatus_F_contig12530.2140.1 ID=mRNA_H-canaliculatus_F_contig12530.2140.1|Name=mRNA_H-canaliculatus_F_contig12530.2140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1344bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12530:784..3337+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAAGAAAAGGCCGACGCCGACAGCGAGAGAGGTGGCGGCGAGGG
CGACGCCGGCGCAAGCGCGTCGAGGCGCGAGGGGAAGCAGATCGACCTCT
TGCTCGAGGTGGAATCTCTGGAGCCGAAGCAGCTCATGTCGATGGACGAA
GAAAAGGCCGACGCCGACAGCGAGAGAGGTGGCGGCGAGGGCGACGCCGG
CGCAAGCGCGTCGAGGCGCGAGGGGAAGCAGATCGACCTCTTGCTCGAGG
TGGAATCTCTGGAGCCGAAGCAGCTCATGTCGGGCGGAAGAGCCGCCCCG
CACAAACCCTCGTCGGCGGGCGCTGCGGCGGGAGGGGGTGGGGGGGGCGC
CGCCGCCGCCGCCGCCGCTGCTGCTTCTGCGGCAGGGGTTGGCGGTGGTG
CAGGGGGAGGGAGGGGCGGGGGTGGCGGCGGCGGCTCGGCGGGAGAGCGA
CGAGACGGGGGGAGCGGCGGTTCGTCGGAGAGTCTGGACTTGCTGAGCCA
GAGGGCGGAAGAGCCGCCCCGCACAAACCCTCGTCGGCGGGCGCTGCGGC
GGGAGGGGGTGGGGGGGGCGCCGCCGCCGCCGCCGCCGCTGCTGCTTCTG
CGGCAGGGGTTGGCGGTGGTGCAGGGGGAGGGAGGGGCGGGGGTGGCGGC
GGCGGCTCGGCGGGAGAGCGACGAGACGGGGGGAGCGGCGGTTCGTCGGA
GAGTCTGGACTTGCTGAGCCAGAGGTCGCTCGAAGAGGAGCTGCACATGC
TCCTGCCCGTGCTGCTTGCGCATGCTCCCCGCATCCGGATGAGGGAGGTG
TCGGCGGCGCTGCTGCGCACCCGCTTCGCCCCGTCCCTGCTGCACGTTTC
CGCGATGAATGACCCTCTCAGCCTAGAAAGGTCGCTCGAAGAGGAGCTGC
ACATGCTCCTGCCCGTGCTGCTTGCGCATGCTCCCCGCATCCGGATGAGG
GAGGTGTCGGCGGCGCTGCTGCGCACCCGCTTCGCCCCGTCCCTGCTGCA
CGTTTCCGCGATGAATGACCCTCTCAGCCTAGAAAGCATCGTCTTGGGCG
TGTGCGACGCCCTGACCGCTACCCCAAAGGGCACCGCGACGCGCACGTCC
CACAAGGTCTCGCAGCGCGCGGAAGAGCTGGTCATGCGCCTCTGTGGCCT
GGGGGCCATCGCCGCGGCCGAGGTCCGCGGAGTCCTGGTGCATCGTCTTG
GGCGTGTGCGACGCCCTGACCGCTACCCCAAAGGGCACCGCGACGCGCAC
GTCCCACAAGGTCTCGCAGCGCGCGGAAGAGCTGGTCATGCGCCTCTGTG
GCCTGGGGGCCATCGCCGCGGCCGAGGTCCGCGGAGTCCTGGTG
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