mRNA_H-canaliculatus_F_contig1251.2131.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1251.2131.1
Unique NamemRNA_H-canaliculatus_F_contig1251.2131.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1251.2131.1 vs. uniprot
Match: A0A6H5K5L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.310e-37
Identity = 93/184 (50.54%), Postives = 117/184 (63.59%), Query Frame = 2 
Query:  161 GSMMMGEKPDQYGQRRK----RRDRRHESSCISGTVVPAVESIHFEGHLLHRVCGVTGKFPVLGDGDSGTNGCVADSNDSEESSLLEDSGENQLTRLRRNPRMMGIISKLKALSTPLSGVDDRGTDPGSSNPNEKQHLHQDRKVQVALGGRRIEAKRLAQQEYLRLFEEMLGELLKIQREKSKA 700
            GS +M +   +  QR++    RR R   S+    T VP  E+IHFEGHLLHR+C VTGKFP  G  D+G+ G      +  E SLLEDSGE+QL RLRRNP++  +IS+LK+LST L  +  RG   GSS  +E         V+ A+ G R    RLAQQEYLRLFEEML ELL++QREK+KA
Sbjct:   79 GSAVMDKNERRKEQRKRQGDGRRYRHGSSNAGDKTPVPTAENIHFEGHLLHRICEVTGKFPGGGSTDNGSEG------ERSEESLLEDSGEHQLARLRRNPKVKEVISRLKSLSTSLIAMSGRGMASGSSTGDEG--------VEYAVRGSRANTLRLAQQEYLRLFEEMLAELLRLQREKAKA 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1251.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5L6_9PHAE2.310e-3750.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1251contigH-canaliculatus_F_contig1251:23880..24994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1115
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1251.2131.1prot_H-canaliculatus_F_contig1251.2131.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1251 24046..24615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.7357535-UTR-H-canaliculatus_F_contig1251:23879..240451622928967.7357535-UTR-H-canaliculatus_F_contig1251:23879..24045Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 23880..24045 +
1696845633.6821988-UTR-H-canaliculatus_F_contig1251:23879..240451696845633.6821988-UTR-H-canaliculatus_F_contig1251:23879..24045Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 23880..24045 +
1622928967.758847-UTR-H-canaliculatus_F_contig1251:24615..249941622928967.758847-UTR-H-canaliculatus_F_contig1251:24615..24994Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 24616..24994 +
1696845633.7075434-UTR-H-canaliculatus_F_contig1251:24615..249941696845633.7075434-UTR-H-canaliculatus_F_contig1251:24615..24994Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 24616..24994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.7474244-CDS-H-canaliculatus_F_contig1251:24045..246151622928967.7474244-CDS-H-canaliculatus_F_contig1251:24045..24615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 24046..24615 +
1696845633.6935332-CDS-H-canaliculatus_F_contig1251:24045..246151696845633.6935332-CDS-H-canaliculatus_F_contig1251:24045..24615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 24046..24615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1251.2131.1

>prot_H-canaliculatus_F_contig1251.2131.1 ID=prot_H-canaliculatus_F_contig1251.2131.1|Name=mRNA_H-canaliculatus_F_contig1251.2131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=190bp
MMMGEKPDQYGQRRKRRDRRHESSCISGTVVPAVESIHFEGHLLHRVCGV
TGKFPVLGDGDSGTNGCVADSNDSEESSLLEDSGENQLTRLRRNPRMMGI
ISKLKALSTPLSGVDDRGTDPGSSNPNEKQHLHQDRKVQVALGGRRIEAK
RLAQQEYLRLFEEMLGELLKIQREKSKAGTSVPCISEVP*
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mRNA from alignment at H-canaliculatus_F_contig1251:23880..24994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1251.2131.1 ID=mRNA_H-canaliculatus_F_contig1251.2131.1|Name=mRNA_H-canaliculatus_F_contig1251.2131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:23880..24994+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGAACGGTCATGCGCTCCGTCATGGCGGCCTTACGCACCAGCAGCTGC
AGGTAAAAGACGCAGAGCCGGAGCCATCTGGTGGAGCCTCTCTGAGCACC
GTGCAAAGTGAATACGTTCGGGGCGAAACATGCCCGCTTTGTGACACAAG
GAGTCCAGCCGGGTCGATGATGATGGGCGAAAAACCGGACCAATACGGTC
AGCGGCGAAAAAGACGAGATCGGAGGCACGAGAGCAGCTGCATAAGCGGC
ACTGTCGTTCCAGCTGTCGAGAGCATACATTTCGAGGGACACCTCCTGCA
CCGCGTTTGCGGGGTTACAGGAAAGTTTCCGGTCCTCGGCGACGGTGACA
GTGGTACCAACGGTTGTGTCGCAGACAGCAACGATTCAGAAGAGTCTTCA
CTGCTCGAAGACTCGGGGGAGAACCAGTTGACCCGTCTCCGCCGCAACCC
TAGGATGATGGGTATAATCTCGAAGCTCAAGGCCCTATCTACACCTCTTT
CTGGCGTCGACGACCGTGGGACCGATCCTGGGTCTTCGAACCCGAACGAG
AAGCAGCATCTGCACCAGGATAGGAAGGTTCAGGTTGCCCTGGGAGGGAG
GAGGATTGAAGCGAAACGACTCGCGCAACAAGAGTACCTGCGACTGTTTG
AGGAAATGTTGGGCGAGCTACTCAAGATACAGCGGGAGAAGAGCAAGGCA
GGCACTTCAGTGCCTTGTATTAGCGAGGTTCCGTAGCCTGCCGTATGATC
GCTTCAAACTCACATGAGGTTGGGTCTAGCGTCAGCCCTCGACGATAGTT
TGCCGAGAGTAAGCTGCATGAAGCAGCCTGAATATGAGCAACGTGGAATT
TGGATAGGGTCAGTTGTCAATTGTGTGAGCTTAGGCGTGCACAAACGGGA
AACCGTGTAACGAGGAAAAACTCTCTATTGAGCGTTCTGGAGCAAATGCT
TTTTACTTGTTGGTGTGGGACTCTGGGATCCCGGGATGCGTTGTGGTCCG
CGTGGGAAGCGGGACAGGACCAAGCACATCCCTGTGCCGAATCATGGCAG
CCCCTTACCTGAGACTTGAGCCCTATGAAGTATTTGGTACCGGCGGGAGA
CTAAGTGCAAGGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1251:23880..24994+

>mRNA_H-canaliculatus_F_contig1251.2131.1 ID=mRNA_H-canaliculatus_F_contig1251.2131.1|Name=mRNA_H-canaliculatus_F_contig1251.2131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:23880..24994+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGATGGGCGAAAAACCGGACCAATACGGTCAGCGGCGAAAAAGACG
AGATCGGAGGCACGAGAGCAGCTGCATAAGCGGCACTGTCGTTCCAGCTG
TCGAGAGCATACATTTCGAGGGACACCTCCTGCACCGCGTTTGCGGGGTT
ACAGGAAAGTTTCCGGTCCTCGGCGACGGTGACAGTGGTACCAACGGTTG
TGTCGCAGACAGCAACGATTCAGAAGAGTCTTCACTGCTCGAAGACTCGG
GGGAGAACCAGTTGACCCGTCTCCGCCGCAACCCTAGGATGATGGGTATA
ATCTCGAAGCTCAAGGCCCTATCTACACCTCTTTCTGGCGTCGACGACCG
TGGGACCGATCCTGGGTCTTCGAACCCGAACGAGAAGCAGCATCTGCACC
AGGATAGGAAGGTTCAGGTTGCCCTGGGAGGGAGGAGGATTGAAGCGAAA
CGACTCGCGCAACAAGAGTACCTGCGACTGTTTGAGGAAATGTTGGGCGA
GCTACTCAAGATACAGCGGGAGAAGAGCAAGGCAGGCACTTCAGTGCCTT
GTATTAGCGAGGTTCCGTAGATGATGATGGGCGAAAAACCGGACCAATAC
GGTCAGCGGCGAAAAAGACGAGATCGGAGGCACGAGAGCAGCTGCATAAG
CGGCACTGTCGTTCCAGCTGTCGAGAGCATACATTTCGAGGGACACCTCC
TGCACCGCGTTTGCGGGGTTACAGGAAAGTTTCCGGTCCTCGGCGACGGT
GACAGTGGTACCAACGGTTGTGTCGCAGACAGCAACGATTCAGAAGAGTC
TTCACTGCTCGAAGACTCGGGGGAGAACCAGTTGACCCGTCTCCGCCGCA
ACCCTAGGATGATGGGTATAATCTCGAAGCTCAAGGCCCTATCTACACCT
CTTTCTGGCGTCGACGACCGTGGGACCGATCCTGGGTCTTCGAACCCGAA
CGAGAAGCAGCATCTGCACCAGGATAGGAAGGTTCAGGTTGCCCTGGGAG
GGAGGAGGATTGAAGCGAAACGACTCGCGCAACAAGAGTACCTGCGACTG
TTTGAGGAAATGTTGGGCGAGCTACTCAAGATACAGCGGGAGAAGAGCAA
GGCAGGCACTTCAGTGCCTTGTATTAGCGAGGTTCCGTAG
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