mRNA_H-canaliculatus_F_contig1251.2130.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1251.2130.1
Unique NamemRNA_H-canaliculatus_F_contig1251.2130.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1251.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1251contigH-canaliculatus_F_contig1251:21953..22950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.6918135-CDS-H-canaliculatus_F_contig1251:21952..220871622928967.6918135-CDS-H-canaliculatus_F_contig1251:21952..22087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 21953..22087 +
1696845633.6588168-CDS-H-canaliculatus_F_contig1251:21952..220871696845633.6588168-CDS-H-canaliculatus_F_contig1251:21952..22087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 21953..22087 +
1622928967.7040734-CDS-H-canaliculatus_F_contig1251:22769..229491622928967.7040734-CDS-H-canaliculatus_F_contig1251:22769..22949Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 22770..22949 +
1696845633.6694682-CDS-H-canaliculatus_F_contig1251:22769..229491696845633.6694682-CDS-H-canaliculatus_F_contig1251:22769..22949Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 22770..22949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1251.2130.1prot_H-canaliculatus_F_contig1251.2130.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1251 21953..22949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1251.2130.1

>prot_H-canaliculatus_F_contig1251.2130.1 ID=prot_H-canaliculatus_F_contig1251.2130.1|Name=mRNA_H-canaliculatus_F_contig1251.2130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
ARLYDSTKGGDGRGLLSRALARGKLDQFLVAFFSDPANLLFAREKVEARR
IKIAKISARRVALRNADWQRDPAKHSGAEFSVRKGRLIPSSSSASPAELS
SDSQV
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mRNA from alignment at H-canaliculatus_F_contig1251:21953..22950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1251.2130.1 ID=mRNA_H-canaliculatus_F_contig1251.2130.1|Name=mRNA_H-canaliculatus_F_contig1251.2130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=998bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:21953..22950+ (Hapterophycus canaliculatus Oshoro5f female)
GCCAGGCTATATGACTCGACGAAAGGTGGAGATGGACGAGGTCTGCTCTC
ACGGGCGCTTGCAAGGGGCAAACTAGACCAATTTTTGGTAGCATTCTTCA
GCGACCCTGCCAACCTTCTGTTCGCGAGGGAAAAGGTGGGTGTATACTTG
TAGACTAATGGGCGTGCTGCCTTCACGGTGAATCAGAGAGACCAGCAGAA
AAATTAACGCGCGGAAGTTTCTCGGCCAAGTAATTGCCACTTTTGTACAT
CAGGGAGAAGCTCGATCCCGTTGACAAGACATCCGACCAATCATATCATA
CCTGGCCTATTTACAGAGAATCGCACCTCGCGCAGACAAGGCGTCGCGAG
AGGGACCCTCGAAAGGAATGCTTCTAGGGCGACTTGCAGGATCATTGCAC
CCACCAAAACACCACCGTTCAGCACGTTCCGTTTTCGTGTCCTCTACCAA
ATCTAGCATCAATCAGCTTGCTTCGATGTCGCCGGGCAAAGTGGTGGAAA
CTCACTGTACAAGTGTATGGACGTCAACAGTTGCCACGTCAGCTATGTTG
GCAAGCGGCCGTGGGTGATCCTTGTAGGCGACCTTCCTTTGCGCAACTAC
AACAAGTTTCATGAGGTCGAAGCATGCATTTATAGCGCGGCTACTAGAGA
GGTAAAAACTGCGTATCACAACATTCTCGCTTCGAACACTCGGAGCTTGG
CAAGAGACAGAATCTGTGATGCAAGCGGAATGTTCATGCCAGACTATCAA
CGGACGTCCAACTCCTTCCGCTTGAAACATTCCGGATACATCCGGTGATC
CCTCCACTACCGAAAAGGTCGAAGCAAGGAGAATCAAAATCGCAAAAATT
TCTGCGAGAAGGGTAGCACTGCGCAATGCCGATTGGCAGAGGGACCCGGC
AAAGCACTCAGGAGCCGAGTTCTCCGTGCGAAAAGGAAGACTCATTCCGA
GTTCTTCATCTGCTTCACCCGCAGAGCTCAGCTCTGACTCTCAAGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1251:21953..22950+

>mRNA_H-canaliculatus_F_contig1251.2130.1 ID=mRNA_H-canaliculatus_F_contig1251.2130.1|Name=mRNA_H-canaliculatus_F_contig1251.2130.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:21953..22950+ (Hapterophycus canaliculatus Oshoro5f female)
GCCAGGCTATATGACTCGACGAAAGGTGGAGATGGACGAGGTCTGCTCTC
ACGGGCGCTTGCAAGGGGCAAACTAGACCAATTTTTGGTAGCATTCTTCA
GCGACCCTGCCAACCTTCTGTTCGCGAGGGAAAAGGCCAGGCTATATGAC
TCGACGAAAGGTGGAGATGGACGAGGTCTGCTCTCACGGGCGCTTGCAAG
GGGCAAACTAGACCAATTTTTGGTAGCATTCTTCAGCGACCCTGCCAACC
TTCTGTTCGCGAGGGAAAAGGTCGAAGCAAGGAGAATCAAAATCGCAAAA
ATTTCTGCGAGAAGGGTAGCACTGCGCAATGCCGATTGGCAGAGGGACCC
GGCAAAGCACTCAGGAGCCGAGTTCTCCGTGCGAAAAGGAAGACTCATTC
CGAGTTCTTCATCTGCTTCACCCGCAGAGCTCAGCTCTGACTCTCAAGTC
GTCGAAGCAAGGAGAATCAAAATCGCAAAAATTTCTGCGAGAAGGGTAGC
ACTGCGCAATGCCGATTGGCAGAGGGACCCGGCAAAGCACTCAGGAGCCG
AGTTCTCCGTGCGAAAAGGAAGACTCATTCCGAGTTCTTCATCTGCTTCA
CCCGCAGAGCTCAGCTCTGACTCTCAAGTC
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