mRNA_H-canaliculatus_F_contig12503.2125.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12503.2125.1
Unique NamemRNA_H-canaliculatus_F_contig12503.2125.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D7FR94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR94_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 1.750e-128
Identity = 183/208 (87.98%), Postives = 187/208 (89.90%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPLV--SLVLPFAPRRGFHGRHR 618
            KNVPATPKL DNSRVYF TEGAQYMALDVGGGGLCALLGVIAVAMD  GTPCEEIF A+SGELTD    YVQSLRANIVSTCGDQFAFKDGEELA+FDDIVHDPMWVI TRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISSEECPM+LHDGYGHFKALIPLRRMP V     +PFA RR F GRHR
Sbjct:    2 KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAISGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPGVPDKSRVPFASRREFRGRHR 209          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: A0A6H5JVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ6_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 6.990e-126
Identity = 178/188 (94.68%), Postives = 182/188 (96.81%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPL 564
            KNVPATPKLRDNSRVYF TEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDD K +VQSLRANIVSTCGDQF FKDGEELA+FDDIVHDPMW+IVTRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEEC M+LHDGYGHFKALIPLRRMPL
Sbjct:   15 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDMKEHVQSLRANIVSTCGDQFTFKDGEELASFDDIVHDPMWLIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECSMMLHDGYGHFKALIPLRRMPL 202          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 1.300e-119
Identity = 181/202 (89.60%), Postives = 185/202 (91.58%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPLVSLVLPFAPRRGFH 606
            KNVPA PKLRDNSRVYF TEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSG+LTDD K YVQSLRA  VSTCGDQFAFKDGEELA+FDDIVHDPMWVIVTRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPM+LHDGYGHFKALIPLRRMPL      F    G+H
Sbjct:   15 KNVPAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLE-----FEMEEGYH 209          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D7FGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY2_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 1.330e-114
Identity = 172/188 (91.49%), Postives = 175/188 (93.09%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPL 564
            KNVPATPKL DNSRVYF T+GAQYMALDVGG GLCALLGVIAVAMD  GTPCEEIF AVSGELTD    YVQSLRANIVSTCGDQFAFKDGEELA+FDDIVHDPMWVI TRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISSEECPM+LHDGYGHFKALIPLRRMPL
Sbjct:   15 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGVGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPL 202          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D7FVQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ8_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.780e-113
Identity = 173/193 (89.64%), Postives = 177/193 (91.71%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPLVSLVL 579
            KNVPATPKL DNSRVYF T+GAQYMALDVGGGGLCALLGVIAVAMD  GTPCEEIF AVSGELTD    YVQSLRANIVSTCGDQFAFKDGEELA+FDDIVHDPMWVI TRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISSEECP +LHDGYGHFKALIPLRRMP   L+L
Sbjct:    2 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPTMLHDGYGHFKALIPLRRMPEYHLLL 194          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.340e-86
Identity = 135/144 (93.75%), Postives = 138/144 (95.83%), Query Frame = 1
Query:  133 MDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPL 564
            MDAAGTPCEEIF  VSGELTDD K YVQSLRANIVSTCGD FAFKDGEELA+FDDIVHDPMWVIVTRAMWELVTL PTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS+ECPM+LHDGYGHFKALIPLRRMPL
Sbjct:    1 MDAAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLRRMPL 144          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.340e-49
Identity = 89/172 (51.74%), Postives = 109/172 (63.37%), Query Frame = 1
Query:   40 RVYFMTEGAQYMALDVGGGGLCA-LLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMILHDGYGHFKALIPLR 552
            RV    EG +Y  +DV G   C  +L  IA+ M     P E+I ++VSG LTDD   YV +LR  +V      F+F DGEELA+FDD+V +PMWVI+ R MWE V L   G  DGRA  L+ K L L G RIVKH++G L PCD G P+ S  CPM+LHDGYGHFKAL+  R
Sbjct:    3 RVMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFADGEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPSGHCPMVLHDGYGHFKALLHFR 174          
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Match: D7FZH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH0_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.290e-37
Identity = 81/173 (46.82%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   31 DNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFA-FKDGEELANFDDIVHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHE-DGHLVPCDAGGPISSEECPMILHDGYGHFKALI 543
            +  RVY   +GA Y +LDV GGG+CA+L +IA+ M + G P   +FAAV GE+T + +GYVQ LR  IV     +     DGEE A FDD+V +P   I T+ MW +V L   G+LD  A+ LLA++ GL+GFR+V+ + DG LVPCD  G     +  + ++DG+GHFKALI
Sbjct:   33 EEGRVYHTPDGATYRSLDVAGGGMCAVLTLIALYMISNGDPYSFVFAAVCGEVTSEMRGYVQCLRGIIVHMSEGRITHLGDGEESAPFDDVVENPDHEIETKGMWRMVMLAARGFLDTLAMDLLAEYFGLNGFRVVRPDGDGLLVPCDYKGLTLEGDVHLAMYDGFGHFKALI 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12503.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FR94_ECTSI1.750e-12887.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVJ6_9PHAE6.990e-12694.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK60_ECTSI1.300e-11989.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGY2_ECTSI1.330e-11491.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVQ8_ECTSI1.780e-11389.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH64_ECTSI2.340e-8693.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPN8_ECTSI2.340e-4951.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZH0_ECTSI5.290e-3746.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12503contigH-canaliculatus_F_contig12503:2253..3009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002310.1
Exons2
Model size621
Cds size621
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.0457757-CDS-H-canaliculatus_F_contig12503:2252..22961622928967.0457757-CDS-H-canaliculatus_F_contig12503:2252..2296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12503 2253..2296 -
1696845633.3653867-CDS-H-canaliculatus_F_contig12503:2252..22961696845633.3653867-CDS-H-canaliculatus_F_contig12503:2252..2296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12503 2253..2296 -
1622928967.241234-CDS-H-canaliculatus_F_contig12503:2432..30091622928967.241234-CDS-H-canaliculatus_F_contig12503:2432..3009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12503 2433..3009 -
1696845633.3748162-CDS-H-canaliculatus_F_contig12503:2432..30091696845633.3748162-CDS-H-canaliculatus_F_contig12503:2432..3009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12503 2433..3009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12503.2125.1prot_H-canaliculatus_F_contig12503.2125.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12503 2253..3009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12503.2125.1

>prot_H-canaliculatus_F_contig12503.2125.1 ID=prot_H-canaliculatus_F_contig12503.2125.1|Name=mRNA_H-canaliculatus_F_contig12503.2125.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=207bp
KNVPATPKLRDNSRVYFMTEGAQYMALDVGGGGLCALLGVIAVAMDAAGT
PCEEIFAAVSGELTDDTKGYVQSLRANIVSTCGDQFAFKDGEELANFDDI
VHDPMWVIVTRAMWELVTLQPTGYLDGRAVWLLAKFLGLHGFRIVKHEDG
HLVPCDAGGPISSEECPMILHDGYGHFKALIPLRRMPLVSLVLPFAPRRG
FHGRHR*
back to top

mRNA from alignment at H-canaliculatus_F_contig12503:2253..3009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12503.2125.1 ID=mRNA_H-canaliculatus_F_contig12503.2125.1|Name=mRNA_H-canaliculatus_F_contig12503.2125.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12503:2253..3009- (Hapterophycus canaliculatus Oshoro5f female)
AAGAACGTCCCGGCGACCCCGAAGCTTCGCGACAACAGCCGCGTGTACTT CATGACTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCGGTC TGTGTGCTCTTCTCGGCGTCATCGCTGTGGCTATGGACGCCGCAGGAACC CCTTGTGAGGAGATCTTCGCAGCCGTCAGCGGCGAGCTCACGGACGACAC GAAGGGGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCGGCG ACCAGTTCGCCTTCAAGGACGGTGAAGAGCTGGCTAACTTCGACGACATC GTCCACGACCCGATGTGGGTGATTGTGACGAGGGCGATGTGGGAGCTGGT GACACTTCAGCCAACTGGATATCTTGACGGAAGGGCGGTGTGGCTGTTGG CGAAGTTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGACGGC CACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCGAAGAGTGCCC CATGATACTGCACGACGGATACGGGCACTTCAAGGCCCTGATTCCACTTC GAAGAATGCCACTGGTAAGTCTCGTCTGTTTTTAATTGTATGTGTGCGCG TGATATTTTTGCTATGAATTTAAAAACATATTTGAAGCTCACACCGCTCA CGCTTGGCCAACGCATTTTTTTGTTTTGCCCCCCCCCTCCAGGAGTTCGA GATGGATGAAGAGTACCATTTGCTCCTCGAAGAGGGTTTCATGGACGGCA CCGATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12503:2253..3009-

>mRNA_H-canaliculatus_F_contig12503.2125.1 ID=mRNA_H-canaliculatus_F_contig12503.2125.1|Name=mRNA_H-canaliculatus_F_contig12503.2125.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1242bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12503:2253..3009- (Hapterophycus canaliculatus Oshoro5f female)
AAGAACGTCCCGGCGACCCCGAAGCTTCGCGACAACAGCCGCGTGTACTT
CATGACTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCGGTC
TGTGTGCTCTTCTCGGCGTCATCGCTGTGGCTATGGACGCCGCAGGAACC
CCTTGTGAGGAGATCTTCGCAGCCGTCAGCGGCGAGCTCACGGACGACAC
GAAGGGGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCGGCG
ACCAGTTCGCCTTCAAGGACGGTGAAGAGCTGGCTAACTTCGACGACATC
GTCCACGACCCGATGTGGGTGATTGTGACGAGGGCGATGTGGGAGCTGGT
GACACTTCAGCCAACTGGATATCTTGACGGAAGGGCGGTGTGGCTGTTGG
CGAAGTTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGACGGC
CACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCGAAGAGTGCCC
CATGATACTGCACGACGGATACGGGCACTTCAAGGCCCTGATTCCACTTC
GAAGAATGCCACTGGTAAGTCTCGTCTAAGAACGTCCCGGCGACCCCGAA
GCTTCGCGACAACAGCCGCGTGTACTTCATGACTGAGGGGGCGCAGTACA
TGGCGCTGGACGTCGGTGGCGGCGGTCTGTGTGCTCTTCTCGGCGTCATC
GCTGTGGCTATGGACGCCGCAGGAACCCCTTGTGAGGAGATCTTCGCAGC
CGTCAGCGGCGAGCTCACGGACGACACGAAGGGGTACGTCCAGTCCCTCC
GCGCCAACATCGTCAGCACGTGCGGCGACCAGTTCGCCTTCAAGGACGGT
GAAGAGCTGGCTAACTTCGACGACATCGTCCACGACCCGATGTGGGTGAT
TGTGACGAGGGCGATGTGGGAGCTGGTGACACTTCAGCCAACTGGATATC
TTGACGGAAGGGCGGTGTGGCTGTTGGCGAAGTTCCTCGGGTTGCACGGA
TTTAGGATAGTCAAGCACGAAGACGGCCACTTGGTCCCATGTGATGCCGG
GGGCCCCATCTCCTCCGAAGAGTGCCCCATGATACTGCACGACGGATACG
GGCACTTCAAGGCCCTGATTCCACTTCGAAGAATGCCACTGGTAAGTCTC
GTCTTACCATTTGCTCCTCGAAGAGGGTTTCATGGACGGCACCGATGATA
CCATTTGCTCCTCGAAGAGGGTTTCATGGACGGCACCGATGA
back to top