mRNA_H-canaliculatus_F_contig12500.2122.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI) HSP 1 Score: 320 bits (819), Expect = 1.280e-100 Identity = 191/227 (84.14%), Postives = 200/227 (88.11%), Query Frame = 1
Query: 1 MRMEDSPISVEVPPITPEAAAXXXXXXXXXXXXXXXASDEAVGSAPVSA-ADGAAPTTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
MRME+SP VEVPP+TPEA XXXXXXXXXXXXXXX A+G +P PE KLDGK+LL ALKKQVEFYFS+QNLQ+DGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESV+DSTVC VT DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTM+SEDDAL TILALRGKTFEGKAIKARLKSENLLRS
Sbjct: 1 MRMENSPGPVEVPPVTPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRS 227
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.290e-95 Identity = 188/232 (81.03%), Postives = 197/232 (84.91%), Query Frame = 1
Query: 7 MEDSPISVEVPPITPEAAAXXXXXXXXXXXXXXXASDEAVGSAPVSAA--------DGAAPTTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
ME SP VEVP +TPEAA XXXXXXXXXXXXXXX +G P PE KLDGK+LL ALKKQVEFYFS+QNLQ+DGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESV+DSTVC VTPDGIKPSIKQERNTIILREIPS+TPQEKIR+IFTGDGVAPIKSIRSDVGDTWFVTM+SEDDALTTILALRGKTFEGKAIKARLKSENLLRS
Sbjct: 1 MESSPGPVEVPRVTPEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTTPPVVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRS 232
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK) HSP 1 Score: 216 bits (549), Expect = 3.450e-67 Identity = 110/164 (67.07%), Postives = 133/164 (81.10%), Query Frame = 1
Query: 187 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
L+G+ L EA+KKQ+EFYFSRQNLQTDGFLVSKMNA M VP+ VIA+F KI+ LT + +I ++ S VC VT D IKP+ K ERNTIILREIPS TP+EK+REIFTG+G+API +IRSDVGDTWFVT+ SE A+ LALR + FEG+ +KARLKSENLLR+
Sbjct: 31 LEGEALREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRA 194
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA) HSP 1 Score: 214 bits (546), Expect = 9.810e-67 Identity = 106/172 (61.63%), Postives = 139/172 (80.81%), Query Frame = 1
Query: 184 KLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEK-------IREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
+L+GK+L++AL++QVEFYFS+ NLQ+DGFLVS+M+A CVP++VIAQF K++ LT+D I +V +S+VC VTP GI+P++K ER+TIILREIPS+TP K +RE+F G+G+API+ +RSDVG TWFVT SE DA+ TILALR +TFEGK +KARLK ENLLRS
Sbjct: 47 RLEGKELVDALRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRS 218
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A2P4XI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA) HSP 1 Score: 199 bits (507), Expect = 9.540e-58 Identity = 104/166 (62.65%), Postives = 133/166 (80.12%), Query Frame = 1
Query: 187 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
L+G +L +A+K+QVEFYFSR NL D +LVS+MN+QM VPV VI F KI+QLT +TAL+VE+V+DST+C++ + D IKP+IK ER TIILREIPS T E++ IF G G + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct: 9 LEGAELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKS 172
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI) HSP 1 Score: 195 bits (495), Expect = 1.450e-57 Identity = 107/173 (61.85%), Postives = 133/173 (76.88%), Query Frame = 1
Query: 166 TTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
T APE G +L EA+K+QVEFYFSR NL D +LVS+MN+QM VPV VI F KI+QLT D AL+V++V+DSTVC++ + D IKP+IK ER TIILREIPS T E++ IF G G + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G IKARLKSEN+L+S
Sbjct: 6 TKAPE----GAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKS 172
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A0P1AUF3_PLAHL (La-related protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL) HSP 1 Score: 191 bits (486), Expect = 1.520e-56 Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 1
Query: 175 PEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
P + L+G +L EA+K+QVEFYFSR NL D +LVS+MN+QM VPV VI F KI+QLT +T L+VE+V+DSTVC+++ D IKP+IK ER TIILREIPS T E++ IF G + +RSDVGDTWF+TM SE +A+ T+LALR KT G AIKARLKSEN+L+S
Sbjct: 5 PVKALEGAELKEAIKRQVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFKDCG--KVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENILKS 172
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: G4YGZ8_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YGZ8_PHYSP) HSP 1 Score: 197 bits (502), Expect = 2.170e-56 Identity = 103/165 (62.42%), Postives = 130/165 (78.79%), Query Frame = 1
Query: 190 DGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
+G +L EA+K+QVEFYFSR NL D +LVS+MN+QM VPV VI F KI+QLT D AL+VE+V+DST+C++ D IKP+IK ER TIILREIPS T E++ IF DG + S+RSDVGDTWFVTM++E +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct: 26 EGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--DGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVLKS 188
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA) HSP 1 Score: 196 bits (497), Expect = 2.320e-56 Identity = 108/173 (62.43%), Postives = 132/173 (76.30%), Query Frame = 1
Query: 166 TTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDG--IKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
+TAP L G L EALK QVEFYFS+ NL D FLVS+MN+QM VPV VI F KI+ LT+D AL+V+S++DSTVC+++P+G IKP+IK ERNTIILREIPS T + + IF G G + S+RSDVGDTWFVTM +E+DA+ T+LALR KTF IKARLKSEN+LRS
Sbjct: 2 STAP--TLSGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRS 170
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: D0NY71_PHYIT (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=D0NY71_PHYIT) HSP 1 Score: 196 bits (497), Expect = 8.080e-56 Identity = 104/166 (62.65%), Postives = 131/166 (78.92%), Query Frame = 1
Query: 187 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 678
L+G +L EA+K+QVEFYFSR NL D +LVS+MN+QM VPV VI F KI QLT +TAL+VE+V++STVC++ + D IKP+IK ER TIILREI S T E++ IF G G + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct: 9 LEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKITQLTDNTALLVEAVQESTVCSLNSSKDAIKPNIKSERTTIILREISSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKS 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12500.2122.1 >prot_H-canaliculatus_F_contig12500.2122.1 ID=prot_H-canaliculatus_F_contig12500.2122.1|Name=mRNA_H-canaliculatus_F_contig12500.2122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=226bp MRMEDSPISVEVPPITPEAAAAAAAAPASAAAGAAGASDEAVGSAPVSAAback to top mRNA from alignment at H-canaliculatus_F_contig12500:1344..3626+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12500.2122.1 ID=mRNA_H-canaliculatus_F_contig12500.2122.1|Name=mRNA_H-canaliculatus_F_contig12500.2122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2283bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12500:1344..3626+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12500:1344..3626+ >mRNA_H-canaliculatus_F_contig12500.2122.1 ID=mRNA_H-canaliculatus_F_contig12500.2122.1|Name=mRNA_H-canaliculatus_F_contig12500.2122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1356bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12500:1344..3626+ (Hapterophycus canaliculatus Oshoro5f female)back to top |