mRNA_H-canaliculatus_F_contig1250.2119.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1250.2119.1
Unique NamemRNA_H-canaliculatus_F_contig1250.2119.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A6H5KVV4_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVV4_9PHAE)

HSP 1 Score: 543 bits (1399), Expect = 1.640e-177
Identity = 367/618 (59.39%), Postives = 401/618 (64.89%), Query Frame = 2
Query:  104 MRPMPLKLQDAEGVPTTMQQKPQXXXXXXXXXXXXXAAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLAVEARAAQRLARAKSGGGGGD-NAASQHGLSGRGRTRAAAQGDLRPIRRHRQIDDDDVSDDDEEFDPAPGSRRSALRRRVDSGPDRYAQDGGDIDGDESSN--------------------DGSWPNGNNPCGSGLERFSSGDD-DDQLDWGESSNGDVNNNWRQQVPGSPERSPMELHHVSTPMTMTSQSEYEHSPNG---GLGRTSSVGSSMASSLSFAS----SPSHSEIMFHSSSPYQLND--CDESG-QSDCTSNQHSPMSIHSPVDQAVATVQAAA------NQVSPAQQQHSNDLSLAAVVDASINGWSSPHQSSSLLHLEQFGWGAANVA--GDAAAPWS-DPSNS-GVPHHHQSSQSSPHSHEDFGFIDLFAANWDPSEG-SSPSXXXXXXXXXXXXXXXXXXXXXXXXXXRSV-TADEDDAFLKEAQAAGVFGGVEDFLIPRSSIGA-TGGYGVPGDFA 1822
            MRPMP+K Q A   P+  Q + Q              AFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDI RFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLAVEARAAQRLAR K G      NA     LSGRGRTRAAAQ DLRPIRR R+++DD                                                                 +G+WP        GLER SSGD  D++L  G+  N + N++WR+QVPGSP RSP  L HV TP TMTS S+YEHSP G   GL RTSSV SS+ASSLSF+S    SPS S+  F  SSPY   D  CDESG  SD   NQHSPMSIHSPV QAVATVQAAA       Q SPA QQ+  DLSLAAVVDAS+NGW+SPHQSS L HLEQFGWGAAN+   GDA  PWS +PS + GVP HHQ SQ+SPH  EDFGFIDLFAANWDP++G S+PS                      XXXX      ++ DAFLKEAQAAGVF GVED L+PRSS+G   G +G P DFA
Sbjct:    1 MRPMPVKFQGAGEAPSMKQHQAQHQELSSTGGGGG-TAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLAVEARAAQRLARVKGGXXXXXXNAFVASQLSGRGRTRAAAQADLRPIRRGRKLEDDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTWPT--QSTAGGLERVSSGDSKDERLCRGQPDNMN-NDHWREQVPGSPARSPTGLQHVLTPTTMTSPSDYEHSPVGDFGGLDRTSSVSSSLASSLSFSSAGSCSPSQSDTTFDPSSPYLFRDTDCDESGGHSDPIINQHSPMSIHSPVGQAVATVQAAAAAVAKATQTSPAMQQYDQDLSLAAVVDASLNGWNSPHQSSPLSHLEQFGWGAANITIPGDAGGPWSSEPSPATGVPIHHQLSQASPHQ-EDFGFIDLFAANWDPNDGGSAPSCTPASSTYSGVRASSPPDNSKSXXXXXDGRNMNDSDAFLKEAQAAGVFIGVEDLLVPRSSVGGGAGSFGGPVDFA 613          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 103 bits (257), Expect = 1.340e-19
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R G RG PQ FA+KL+ ++E E  +++ W   G AF V+DI RFS E+L KYF HSKF SFQRQLNLY F++  +G+ AG++ H  FR+G+  LLS VRR
Sbjct:    5 RTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRR 104          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.720e-19
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R G RG PQ FA KLF L+  E  +IV W P GLAFR+ D+ +F+ E L KYF H+   SFQRQLNLY F++  KG  +G F H SF+R +  LL +VRR
Sbjct:   19 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRR 118          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.310e-19
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R G RG PQ+F +KLF L+E+EDS ++ W  +G  F ++D+  F+ E LE+YF H KFTSFQRQLNLY F++  KG   G + HP F+R     LSKVRR
Sbjct:   50 RTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRR 149          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.330e-18
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R G RG PQ+F +KL+ ++  E  +I+ W   G +F +K++  F   +L KYF H K++SFQRQLNLY F++ +KG   G++ H  F R Q  LL+KVRR
Sbjct:    5 RTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 1.620e-17
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  263 FAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLA 553
            F QKLF L+E E +++V W   GL+FRV D  +F+ EV+ KYF H+K TSFQRQLNLY F+R  KG   G+++HP F+RG+R  +S+++R   K  L+
Sbjct:   13 FPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFRRVTKGEDTGSYYHPKFQRGRRDFISEIKRLPGKSSLS 110          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-17
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R+G RG PQ FA+KL  ++  E +  + W  +G AF+V D+ RFS ++L KY+ HSKF+SFQRQLNLY F++  KGA AG + HP FRR +   L  VRR
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 132          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-17
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  239 GARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQRHLLSKVRR 529
            G RG PQ F ++L+ L++EED+ +V W+ +G  F + D+  F    L KYF H+K+TSFQRQ NLY F++  +G  AG + H  F++G+   L KVRR
Sbjct:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A7S3H846_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H846_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.690e-17
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  224 PTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRR 529
            P   +  R     F  KLF LV  ED  IV W   G +F+V+D+ +F   +L K+F H+ FTSFQRQLNLY F+R      GA++HP F++GQR L   +RR
Sbjct:   22 PGTNIPYRNYSNTFPVKLFDLVSSEDEGIVGWQGHGTSFQVRDMDKFVNLILPKHFKHNNFTSFQRQLNLYGFRRSASYDKGAYYHPQFQQGQRELAESIRR 123          
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.870e-17
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  233 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQRHLLSKVRR 529
            R G RG PQ FA KL+ ++E E +E++ W   G AF +KD+  F  +VL KYF H K++SFQRQLNLY F++  KG   G ++H  F R +R LL  VRR
Sbjct:   75 RTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRR 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1250.2119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVV4_9PHAE1.640e-17759.39HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A6V1QFS1_HETAK1.340e-1954.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YGA3_9STRA5.720e-1953.00HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7R9YBQ9_9STRA6.310e-1952.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2BSE7_9STRA6.330e-1845.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812YT23_SYMMI1.620e-1750.00HSF2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6H5KMN3_9PHAE2.040e-1751.00HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A835Z6Z9_9STRA2.400e-1744.90HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A7S3H846_9STRA3.690e-1745.10Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2WKC6_9STRA6.870e-1749.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1250contigH-canaliculatus_F_contig1250:4173..8764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog2850.Phatr42714
KEGG koko:K09419
EggNOG free text desc.heat shock factor
EggNOG OGs2XG5V@2836,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-06_001080.1
Exons2
Model size3407
Cds size1722
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1250.2119.1prot_H-canaliculatus_F_contig1250.2119.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1250 4276..7182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928966.2545094-UTR-H-canaliculatus_F_contig1250:4172..42751622928966.2545094-UTR-H-canaliculatus_F_contig1250:4172..4275Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1250 4173..4275 +
1696845632.99855-UTR-H-canaliculatus_F_contig1250:4172..42751696845632.99855-UTR-H-canaliculatus_F_contig1250:4172..4275Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1250 4173..4275 +
1622928966.3056605-UTR-H-canaliculatus_F_contig1250:7182..87641622928966.3056605-UTR-H-canaliculatus_F_contig1250:7182..8764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1250 7183..8764 +
1696845633.0280883-UTR-H-canaliculatus_F_contig1250:7182..87641696845633.0280883-UTR-H-canaliculatus_F_contig1250:7182..8764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1250 7183..8764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928966.2715535-CDS-H-canaliculatus_F_contig1250:4275..45671622928966.2715535-CDS-H-canaliculatus_F_contig1250:4275..4567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 4276..4567 +
1696845633.0110824-CDS-H-canaliculatus_F_contig1250:4275..45671696845633.0110824-CDS-H-canaliculatus_F_contig1250:4275..4567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 4276..4567 +
1622928966.2878664-CDS-H-canaliculatus_F_contig1250:5752..71821622928966.2878664-CDS-H-canaliculatus_F_contig1250:5752..7182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 5753..7182 +
1696845633.0200217-CDS-H-canaliculatus_F_contig1250:5752..71821696845633.0200217-CDS-H-canaliculatus_F_contig1250:5752..7182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 5753..7182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1250.2119.1

>prot_H-canaliculatus_F_contig1250.2119.1 ID=prot_H-canaliculatus_F_contig1250.2119.1|Name=mRNA_H-canaliculatus_F_contig1250.2119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=574bp
MRPMPLKLQDAEGVPTTMQQKPQQPQQASSTGGSGGAAFSPTRRVGARGG
PQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIHRFSCEVLEKYFNHSK
FTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLA
VEARAAQRLARAKSGGGGGDNAASQHGLSGRGRTRAAAQGDLRPIRRHRQ
IDDDDVSDDDEEFDPAPGSRRSALRRRVDSGPDRYAQDGGDIDGDESSND
GSWPNGNNPCGSGLERFSSGDDDDQLDWGESSNGDVNNNWRQQVPGSPER
SPMELHHVSTPMTMTSQSEYEHSPNGGLGRTSSVGSSMASSLSFASSPSH
SEIMFHSSSPYQLNDCDESGQSDCTSNQHSPMSIHSPVDQAVATVQAAAN
QVSPAQQQHSNDLSLAAVVDASINGWSSPHQSSSLLHLEQFGWGAANVAG
DAAAPWSDPSNSGVPHHHQSSQSSPHSHEDFGFIDLFAANWDPSEGSSPS
SSTSSGATTSCSPPSSSSSDNLNGGGRSVTADEDDAFLKEAQAAGVFGGV
EDFLIPRSSIGATGGYGVPGDFA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1250:4173..8764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1250.2119.1 ID=mRNA_H-canaliculatus_F_contig1250.2119.1|Name=mRNA_H-canaliculatus_F_contig1250.2119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4592bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1250:4173..8764+ (Hapterophycus canaliculatus Oshoro5f female)
AATACCCTCTACACCGCGCAGTCTAACACCAAATTTCCGACGGTGCTTTG CAAGTCTCTCTGCAACTGCACGGCGACTTCCAACACCGTCATCGTCAGAC AAGATGCGCCCTATGCCTCTAAAACTCCAGGACGCGGAGGGTGTGCCAAC CACGATGCAGCAGAAGCCACAGCAGCCGCAGCAGGCATCCAGTACAGGCG GCAGCGGCGGCGCGGCGTTCAGCCCAACCCGCAGGGTGGGCGCCCGCGGA GGGCCTCAGCTCTTTGCGCAAAAGCTGTTCACGTTGGTAGAGGAGGAAGA CTCCGAGATCGTCGAGTGGCTACCCGATGGCTTGGCGTTTCGCGTGAAGG ACATCCACCGTTTCAGCTGCGAGGTCTTGGAGAAATATTTTAACCGTGAG TGTGCTGTACCGCTTGCGTTTGTGCGCGCGCGCGCGCGCGCGCGCGTGTG TGTGTGTATGTGTGTGTGTGTGTGCGGATCCAGCATGAAGTGCGAATGCT CGACGGAGGATTTGTTGATGGATCGATCGCCTCATAATCGTCCTTGCGCT GACGCTATAATTAGGATACATCGTTCGCTAGCGCTAGGGACGGGCGTCCT TTGCTTTAGAGAGCGGTTGAGGCTATCGGGTACCCCATGCGACTTGCCGC TTGGATGTACGGAGGGAAAATACCATGACCCTGCTGCGACCGATACAACC CCGGAAACAGTTGAAAAAAAACTGGTCTGGGCACCACAACGCCGTAGTAT TCTTACAATCTCTCGATCTGCCCCAGCGGAGCAACGCATCTGCCAAGCGT CTATTATAGCAAACACGAGCGTGCTGCGCCTGCCCACACCGTGCTCCCTG CCTTGATTCGTGTACCGTGGTGCGTCCGTGCAAATGACGGCGCATGCCAA GCTCGATCGAGACCGTTACTGTTGTGCAAGTATCACTGCTGTCTTCAGTT CCCGTTCAGGACAGCTCGTGCCCTGTAGAAACGAACTCCTTTATGGGCGA TACTTTCCAACGCTCTCCCACGAAACTGAACATGAGTGCCACTCTTTCGA TCCCCTCTCAACGATCGTCTGCAAAGCCCCACCTCTACGACGTCGATGTC GTCCGTGTATACCGCCCACCTCGTCTCCACACGCCGCTCCCAGCAGCAAG CATCGACCGCCCCACAAGCACACCCACGGCGTACCTCATCGAATCTCGGC GGCAGCCCTGTGCACTGCAGTAGATTTGCGCCCCGCGCAACCATTTGGGT CCACCTTTCGCTGCCCTTTGTTTTCGTTTCCTTTGATCGCCTCCGGACGG CCCTGCTTCTACGCAGACTTCTGGCTTGTACTCAGTTCGAATGGGCAGAA GCTAGCGTAGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCA GAAGCAGGCATATCAGGCTACATACATCTGTAAGATTCTAAAAAACCGTG CCTGCCGTTCAGATCAGGTCAAGGGTATCCATTCATTCTCACCCATCCAT CCTGCCATCTTCCCACCGCCGTGCTTCGTCCCCTCTGCTCGCCGCCTTCG ACTTTCCCCGCCGCAAACCCCGCCATGCAGACTCTAAGTTTACCTCGTTC CAGCGCCAGCTCAACCTCTACCAGTTCAAGCGCCGCAAAGGGGCGCACGC CGGGGCCTTTCACCACCCCAGCTTCCGCAGGGGTCAGCGGCATCTCCTCT CCAAGGTCCGGCGCCAAAAGGTGAAACGCGACCTCGCCGTCGAGGCTCGC GCCGCCCAGCGCCTGGCACGCGCCAAGAGCGGTGGGGGTGGGGGGGACAA CGCTGCCTCTCAGCACGGGTTGTCCGGGAGGGGAAGGACCAGGGCGGCGG CGCAAGGCGACCTCCGCCCGATTCGCCGGCACCGCCAGATCGATGACGAC GACGTGTCGGACGACGACGAAGAGTTCGACCCGGCGCCGGGGTCCCGTCG GAGTGCGTTGCGCCGCCGCGTGGACAGCGGCCCTGACCGGTACGCCCAGG ACGGCGGCGACATCGACGGCGACGAGAGTTCTAACGACGGCTCGTGGCCC AACGGCAACAATCCCTGCGGCAGCGGCTTGGAGCGGTTTTCGAGCGGCGA CGACGATGATCAGCTGGACTGGGGGGAGTCCAGCAACGGGGACGTGAACA ACAACTGGCGGCAGCAAGTACCGGGGTCCCCCGAGAGATCGCCCATGGAG CTGCACCACGTTTCGACGCCCATGACCATGACCTCGCAGTCCGAGTACGA GCACTCCCCCAACGGCGGCCTTGGCCGGACGTCCTCGGTTGGGTCGTCGA TGGCTTCGTCGCTGTCGTTCGCTTCGTCGCCGAGCCACTCCGAGATAATG TTCCACTCCAGCAGCCCGTACCAGCTCAACGACTGCGACGAGAGCGGCCA AAGCGACTGCACCAGCAACCAGCACTCGCCGATGTCCATCCACTCGCCAG TGGACCAGGCCGTGGCGACCGTTCAGGCGGCGGCGAACCAGGTGTCTCCT GCTCAACAACAGCACAGCAACGACCTGTCCCTCGCTGCGGTGGTAGATGC GTCCATCAATGGGTGGAGCTCCCCGCACCAATCCTCGTCGCTGCTGCACC TGGAGCAGTTCGGGTGGGGCGCGGCGAACGTCGCAGGCGATGCGGCGGCG CCATGGTCCGACCCTTCGAACTCCGGCGTGCCACACCACCACCAATCCTC TCAGTCGTCCCCGCACAGCCACGAGGACTTCGGATTCATCGACTTGTTCG CGGCAAACTGGGACCCTAGTGAGGGCTCTTCTCCGTCGTCCTCGACGAGC TCCGGAGCGACGACCTCTTGTTCTCCTCCCTCTTCCTCATCTTCTGACAA CCTCAACGGCGGAGGGAGAAGCGTCACCGCCGATGAAGATGACGCGTTTT TGAAGGAGGCGCAGGCCGCAGGCGTTTTCGGCGGCGTCGAAGATTTCCTC ATCCCTCGCAGTAGCATCGGCGCCACCGGCGGCTACGGCGTTCCCGGGGA CTTCGCTTGATTGAATTGACTGGAAAAACGACATTAGTCTTGAAAAACCT TGGCGCGATAGCAGAATGTTGGGGTTTCGTTTTGGTCGGTGGAACGGGGA ACGCTTCCCGGAAAGGTAGGGGTGCGGGTTTACTGTCGGCTCAGAACAAA GTAACATGGGTCGGCGTTCTTTATTGTGCGAAGTGGCGGTTCGGTTCGGT GCCCACAGACTTCGTCTGCCGGTCAATGAAACTCGCTCGCTCGGACCATT GAAAAAACACTTTGTGTGACCCGGGAGGGGATAGCTAACTCTCGGCTTTG GAGTAGCAGGTACTAGTCGTGGTGCCGGCAGAGTGTCGCGCACCACTTTA GGAGGGTGGATGCGAACGCTCAGCCTCACCTGATACCCTGCCACACCGTT GTGTATTGTACCTCCTGTGCATAATTGCCGGTTATTGATTGTACAGTCAT ACTCGTGTGGTATATTTGCTTGATGTTCGTGGTTACACGATGTGCTGATT GCAGACTTGTTCATGAATCCTAAAAAGAATTAAGTTTGGTGGTCAGTGGT GGTATCGAAAGGTGTGTACAACGTAGCACCCCGGTTACTTTATCGGTACC GACTATAGTGTTCTTAATCACGGCTCAAGGGGTTTGAGCAAAACCTGTAG CCGTACTCCAGCAGACAAAGCACGCCAACGCTGTGGTACAAAATAAGTCA GTCTGTTCGTTGTGAGTAGCCCCCCTGCTGAAGACGACGCACATCTCTTT CGGTTGGTCTTAGCCCGCCAGCAAGCCGCTCTCCTCGTGAATCGATTTAT CTGTCTGTTTTGTCTGATTGTTTGTGTGTTTCCTGCACACGATCGAGCAT TCCAAAAGGAAAGCTGGGTCTATTTAGAGCACTGTGTGGTTCAGGTTCCA GGTCAGGAGATACGTTGTGTAAGTTGGACGTTTGGGGTGATGGTGTAAGT GCTCGTTTTTACTGCGCCGTGAATAGTAACACAGTGGTGTAATTGAGAGC GGATATTAGTGTGGAGGCCTACCGTGGGAGGGCACTTGGGCACCGAAAAA GCCCCGGGGATTGTGGTGGGAGTACGTACAGCTAGCTGTGGATCTAGGAG TTTAAGCGATGTCTCAACACTTGTAATGCTAGGGGATCGATCGGCTCGGA GGGTTAGAGCATACCTTCAAGATTTCTTGTCTAGGCGAAGTTTTGTCGCA CTCTTTTAGTTTCCGTTGGCTGGGAAAGTGGGTTGGTTTCGGGCGGGTTT GTGCATGTCTGTCTGTCTATTCTACTGTCATTTATCGTTATCTATCTATC GTTGGTGTTGTACGTGCGATGGTTATTAGGTGTTGATTCGATTGATTGAG CACACGCTAGGGGGGTTGTGGTTGTTGTTGGTTGTTGGGGGTGGGAGAGA GAAAAACAGATTCTGCGGCGACACCGAACGGCTGTTCGGCTGTACGCGGG GCGTCCTGCAAAGCATTTTCGAAAGCTAGCAGTGTTCCGCAATACTACAT GGTTTCGGAACACCTTACTTAGAGGCCGGCAGGCGCTTGCCTGCTGGAGA AGGACGAACGAGCTGCGAAAACGAAGATTAAAATTAAACAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1250:4173..8764+

>mRNA_H-canaliculatus_F_contig1250.2119.1 ID=mRNA_H-canaliculatus_F_contig1250.2119.1|Name=mRNA_H-canaliculatus_F_contig1250.2119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1250:4173..8764+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCCTATGCCTCTAAAACTCCAGGACGCGGAGGGTGTGCCAACCAC
GATGCAGCAGAAGCCACAGCAGCCGCAGCAGGCATCCAGTACAGGCGGCA
GCGGCGGCGCGGCGTTCAGCCCAACCCGCAGGGTGGGCGCCCGCGGAGGG
CCTCAGCTCTTTGCGCAAAAGCTGTTCACGTTGGTAGAGGAGGAAGACTC
CGAGATCGTCGAGTGGCTACCCGATGGCTTGGCGTTTCGCGTGAAGGACA
TCCACCGTTTCAGCTGCGAGGTCTTGGAGAAATATTTTAACCATGCGCCC
TATGCCTCTAAAACTCCAGGACGCGGAGGGTGTGCCAACCACGATGCAGC
AGAAGCCACAGCAGCCGCAGCAGGCATCCAGTACAGGCGGCAGCGGCGGC
GCGGCGTTCAGCCCAACCCGCAGGGTGGGCGCCCGCGGAGGGCCTCAGCT
CTTTGCGCAAAAGCTGTTCACGTTGGTAGAGGAGGAAGACTCCGAGATCG
TCGAGTGGCTACCCGATGGCTTGGCGTTTCGCGTGAAGGACATCCACCGT
TTCAGCTGCGAGGTCTTGGAGAAATATTTTAACCACTCTAAGTTTACCTC
GTTCCAGCGCCAGCTCAACCTCTACCAGTTCAAGCGCCGCAAAGGGGCGC
ACGCCGGGGCCTTTCACCACCCCAGCTTCCGCAGGGGTCAGCGGCATCTC
CTCTCCAAGGTCCGGCGCCAAAAGGTGAAACGCGACCTCGCCGTCGAGGC
TCGCGCCGCCCAGCGCCTGGCACGCGCCAAGAGCGGTGGGGGTGGGGGGG
ACAACGCTGCCTCTCAGCACGGGTTGTCCGGGAGGGGAAGGACCAGGGCG
GCGGCGCAAGGCGACCTCCGCCCGATTCGCCGGCACCGCCAGATCGATGA
CGACGACGTGTCGGACGACGACGAAGAGTTCGACCCGGCGCCGGGGTCCC
GTCGGAGTGCGTTGCGCCGCCGCGTGGACAGCGGCCCTGACCGGTACGCC
CAGGACGGCGGCGACATCGACGGCGACGAGAGTTCTAACGACGGCTCGTG
GCCCAACGGCAACAATCCCTGCGGCAGCGGCTTGGAGCGGTTTTCGAGCG
GCGACGACGATGATCAGCTGGACTGGGGGGAGTCCAGCAACGGGGACGTG
AACAACAACTGGCGGCAGCAAGTACCGGGGTCCCCCGAGAGATCGCCCAT
GGAGCTGCACCACGTTTCGACGCCCATGACCATGACCTCGCAGTCCGAGT
ACGAGCACTCCCCCAACGGCGGCCTTGGCCGGACGTCCTCGGTTGGGTCG
TCGATGGCTTCGTCGCTGTCGTTCGCTTCGTCGCCGAGCCACTCCGAGAT
AATGTTCCACTCCAGCAGCCCGTACCAGCTCAACGACTGCGACGAGAGCG
GCCAAAGCGACTGCACCAGCAACCAGCACTCGCCGATGTCCATCCACTCG
CCAGTGGACCAGGCCGTGGCGACCGTTCAGGCGGCGGCGAACCAGGTGTC
TCCTGCTCAACAACAGCACAGCAACGACCTGTCCCTCGCTGCGGTGGTAG
ATGCGTCCATCAATGGGTGGAGCTCCCCGCACCAATCCTCGTCGCTGCTG
CACCTGGAGCAGTTCGGGTGGGGCGCGGCGAACGTCGCAGGCGATGCGGC
GGCGCCATGGTCCGACCCTTCGAACTCCGGCGTGCCACACCACCACCAAT
CCTCTCAGTCGTCCCCGCACAGCCACGAGGACTTCGGATTCATCGACTTG
TTCGCGGCAAACTGGGACCCTAGTGAGGGCTCTTCTCCGTCGTCCTCGAC
GAGCTCCGGAGCGACGACCTCTTGTTCTCCTCCCTCTTCCTCATCTTCTG
ACAACCTCAACGGCGGAGGGAGAAGCGTCACCGCCGATGAAGATGACGCG
TTTTTGAAGGAGGCGCAGGCCGCAGGCGTTTTCGGCGGCGTCGAAGATTT
CCTCATCCCTCGCAGTAGCATCGGCGCCACCGGCGGCTACGGCGTTCCCG
GGGACTTCGCTTGAACTCTAAGTTTACCTCGTTCCAGCGCCAGCTCAACC
TCTACCAGTTCAAGCGCCGCAAAGGGGCGCACGCCGGGGCCTTTCACCAC
CCCAGCTTCCGCAGGGGTCAGCGGCATCTCCTCTCCAAGGTCCGGCGCCA
AAAGGTGAAACGCGACCTCGCCGTCGAGGCTCGCGCCGCCCAGCGCCTGG
CACGCGCCAAGAGCGGTGGGGGTGGGGGGGACAACGCTGCCTCTCAGCAC
GGGTTGTCCGGGAGGGGAAGGACCAGGGCGGCGGCGCAAGGCGACCTCCG
CCCGATTCGCCGGCACCGCCAGATCGATGACGACGACGTGTCGGACGACG
ACGAAGAGTTCGACCCGGCGCCGGGGTCCCGTCGGAGTGCGTTGCGCCGC
CGCGTGGACAGCGGCCCTGACCGGTACGCCCAGGACGGCGGCGACATCGA
CGGCGACGAGAGTTCTAACGACGGCTCGTGGCCCAACGGCAACAATCCCT
GCGGCAGCGGCTTGGAGCGGTTTTCGAGCGGCGACGACGATGATCAGCTG
GACTGGGGGGAGTCCAGCAACGGGGACGTGAACAACAACTGGCGGCAGCA
AGTACCGGGGTCCCCCGAGAGATCGCCCATGGAGCTGCACCACGTTTCGA
CGCCCATGACCATGACCTCGCAGTCCGAGTACGAGCACTCCCCCAACGGC
GGCCTTGGCCGGACGTCCTCGGTTGGGTCGTCGATGGCTTCGTCGCTGTC
GTTCGCTTCGTCGCCGAGCCACTCCGAGATAATGTTCCACTCCAGCAGCC
CGTACCAGCTCAACGACTGCGACGAGAGCGGCCAAAGCGACTGCACCAGC
AACCAGCACTCGCCGATGTCCATCCACTCGCCAGTGGACCAGGCCGTGGC
GACCGTTCAGGCGGCGGCGAACCAGGTGTCTCCTGCTCAACAACAGCACA
GCAACGACCTGTCCCTCGCTGCGGTGGTAGATGCGTCCATCAATGGGTGG
AGCTCCCCGCACCAATCCTCGTCGCTGCTGCACCTGGAGCAGTTCGGGTG
GGGCGCGGCGAACGTCGCAGGCGATGCGGCGGCGCCATGGTCCGACCCTT
CGAACTCCGGCGTGCCACACCACCACCAATCCTCTCAGTCGTCCCCGCAC
AGCCACGAGGACTTCGGATTCATCGACTTGTTCGCGGCAAACTGGGACCC
TAGTGAGGGCTCTTCTCCGTCGTCCTCGACGAGCTCCGGAGCGACGACCT
CTTGTTCTCCTCCCTCTTCCTCATCTTCTGACAACCTCAACGGCGGAGGG
AGAAGCGTCACCGCCGATGAAGATGACGCGTTTTTGAAGGAGGCGCAGGC
CGCAGGCGTTTTCGGCGGCGTCGAAGATTTCCTCATCCCTCGCAGTAGCA
TCGGCGCCACCGGCGGCTACGGCGTTCCCGGGGACTTCGCTTGA
back to top