mRNA_H-canaliculatus_F_contig12482.2100.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12482.2100.1
Unique NamemRNA_H-canaliculatus_F_contig12482.2100.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12482.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12482contigH-canaliculatus_F_contig12482:1107..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5200696-CDS-H-canaliculatus_F_contig12482:1106..14961622928963.5200696-CDS-H-canaliculatus_F_contig12482:1106..1496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 1107..1496 +
1696845631.933961-CDS-H-canaliculatus_F_contig12482:1106..14961696845631.933961-CDS-H-canaliculatus_F_contig12482:1106..1496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 1107..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12482.2100.1prot_H-canaliculatus_F_contig12482.2100.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12482 1107..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12482.2100.1

>prot_H-canaliculatus_F_contig12482.2100.1 ID=prot_H-canaliculatus_F_contig12482.2100.1|Name=mRNA_H-canaliculatus_F_contig12482.2100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
HHRGPHRHHDEHHRRREEERRRWERARSLAFPWLSWASSCRSSAGVVVEV
CSCSPPPPPPSPSLRRLRGPPFLFAVAAAAAAAAASAAAGAARPERPSRP
SRPPWRVLAPPPCEPRGTAGAPLSLSRSPR
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mRNA from alignment at H-canaliculatus_F_contig12482:1107..1498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12482.2100.1 ID=mRNA_H-canaliculatus_F_contig12482.2100.1|Name=mRNA_H-canaliculatus_F_contig12482.2100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12482:1107..1498+ (Hapterophycus canaliculatus Oshoro5f female)
CACCATCGAGGCCCGCATCGCCACCACGACGAGCACCATCGGCGGCGGGA
AGAGGAGCGGCGCCGGTGGGAACGGGCTCGCTCGCTTGCTTTCCCTTGGT
TGTCATGGGCTTCGTCTTGTCGGTCTTCGGCCGGGGTCGTGGTTGAGGTT
TGCTCTTGTTCGCCGCCGCCGCCGCCGCCGAGTCCTTCCCTTCGGCGCCT
TCGGGGTCCTCCTTTTCTTTTTGCTGTAGCTGCAGCAGCAGCTGCTGCTG
CTGCGTCTGCCGCTGCTGGTGCTGCTCGACCTGAGCGGCCTTCGCGGCCT
TCGCGGCCCCCTTGGCGCGTTCTCGCTCCGCCGCCCTGCGAGCCGCGCGG
GACGGCGGGGGCTCCGCTTTCTCTTTCGCGTTCTCCCCGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12482:1107..1498+

>mRNA_H-canaliculatus_F_contig12482.2100.1 ID=mRNA_H-canaliculatus_F_contig12482.2100.1|Name=mRNA_H-canaliculatus_F_contig12482.2100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12482:1107..1498+ (Hapterophycus canaliculatus Oshoro5f female)
CACCATCGAGGCCCGCATCGCCACCACGACGAGCACCATCGGCGGCGGGA
AGAGGAGCGGCGCCGGTGGGAACGGGCTCGCTCGCTTGCTTTCCCTTGGT
TGTCATGGGCTTCGTCTTGTCGGTCTTCGGCCGGGGTCGTGGTTGAGGTT
TGCTCTTGTTCGCCGCCGCCGCCGCCGCCGAGTCCTTCCCTTCGGCGCCT
TCGGGGTCCTCCTTTTCTTTTTGCTGTAGCTGCAGCAGCAGCTGCTGCTG
CTGCGTCTGCCGCTGCTGGTGCTGCTCGACCTGAGCGGCCTTCGCGGCCT
TCGCGGCCCCCTTGGCGCGTTCTCGCTCCGCCGCCCTGCGAGCCGCGCGG
GACGGCGGGGGCTCCGCTTTCTCTTTCGCGTTCTCCCCGGCACCATCGAG
GCCCGCATCGCCACCACGACGAGCACCATCGGCGGCGGGAAGAGGAGCGG
CGCCGGTGGGAACGGGCTCGCTCGCTTGCTTTCCCTTGGTTGTCATGGGC
TTCGTCTTGTCGGTCTTCGGCCGGGGTCGTGGTTGAGGTTTGCTCTTGTT
CGCCGCCGCCGCCGCCGCCGAGTCCTTCCCTTCGGCGCCTTCGGGGTCCT
CCTTTTCTTTTTGCTGTAGCTGCAGCAGCAGCTGCTGCTGCTGCGTCTGC
CGCTGCTGGTGCTGCTCGACCTGAGCGGCCTTCGCGGCCTTCGCGGCCCC
CTTGGCGCGTTCTCGCTCCGCCGCCCTGCGAGCCGCGCGGGACGGCGGGG
GCTCCGCTTTCTCTTTCGCGTTCTCCCCGG
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