mRNA_H-canaliculatus_F_contig12482.2101.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12482.2101.1
Unique NamemRNA_H-canaliculatus_F_contig12482.2101.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12482.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12482contigH-canaliculatus_F_contig12482:1611..3417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size464
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12482.2101.1prot_H-canaliculatus_F_contig12482.2101.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12482 1612..3417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.4334598-CDS-H-canaliculatus_F_contig12482:1611..17491622928963.4334598-CDS-H-canaliculatus_F_contig12482:1611..1749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 1612..1749 -
1696845631.905923-CDS-H-canaliculatus_F_contig12482:1611..17491696845631.905923-CDS-H-canaliculatus_F_contig12482:1611..1749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 1612..1749 -
1622928963.4546506-CDS-H-canaliculatus_F_contig12482:2359..24941622928963.4546506-CDS-H-canaliculatus_F_contig12482:2359..2494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 2360..2494 -
1696845631.9140937-CDS-H-canaliculatus_F_contig12482:2359..24941696845631.9140937-CDS-H-canaliculatus_F_contig12482:2359..2494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 2360..2494 -
1622928963.4750395-CDS-H-canaliculatus_F_contig12482:3228..34171622928963.4750395-CDS-H-canaliculatus_F_contig12482:3228..3417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 3229..3417 -
1696845631.9257014-CDS-H-canaliculatus_F_contig12482:3228..34171696845631.9257014-CDS-H-canaliculatus_F_contig12482:3228..3417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12482 3229..3417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12482.2101.1

>prot_H-canaliculatus_F_contig12482.2101.1 ID=prot_H-canaliculatus_F_contig12482.2101.1|Name=mRNA_H-canaliculatus_F_contig12482.2101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
SSLALLLLPLPLLLLLLRCQRTSDRNPSSWRSSPLVTSSRQAISSLLSRT
VEQWGSKHDNLQKLSRSITAVEQILFAQAPSFQSYVDRGTFDARATQAFS
RTMHLTCEPQQSREEQAAGCREALASLRDVTGLPAPASEGVRGDGDGQSR
HHHG
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mRNA from alignment at H-canaliculatus_F_contig12482:1611..3417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12482.2101.1 ID=mRNA_H-canaliculatus_F_contig12482.2101.1|Name=mRNA_H-canaliculatus_F_contig12482.2101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1807bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12482:1611..3417- (Hapterophycus canaliculatus Oshoro5f female)
TCTTCTTTGGCCCTTCTCCTCCTCCCCCTCCCCCTCCTCCTCCTGCTTTT
GCGTTGCCAGAGAACCAGCGACCGCAATCCGTCGTCGTGGCGCTCGAGCC
CGCTGGTGACCTCCTCGCGCCAAGCGATCTCCTCCCTGCTCAGCAGGACC
GTGGAGCAATGGGGCAGCAAGCACGACAACTTGCAGAAGGTGGGTCGGAG
CGGGCCGGGCCGTTGTCCTCTTTAGCTGTACTAACACGTGCGGGAGTTGC
CCGACCGGTGGCGAGCACGTTCTCACTGCCTTGCTGTTCGTCGACCACGT
GCTCGCGTCGAGGTATTCTCAGGCGAGGGTTTTAAGCATCCCGTCCAATT
ACGCGCCGCGAGCCGTGTCATTTTCGATTCTTGCCTCCTGGAGCGTTTCC
TCCTCTCCCGAAAGCGTTCGGCGGCTTTGAACGGTAGACACCGGAACTTT
TTAGCCTTGGCCTTGCGTGCGGATCACACCCCGGCCTTGTCGGGGGCCGT
TGTGCGCCAGCAACTGCTGTACACCCGTGCGCCAGCAACAAACCGCTGTG
CCCCCAGCCAGAAGTGCTGAACCAGTCACAGCAACGTTTCGCTCGCACAC
GAAGCCTCGCAACGTCCTCGTTCCCAATGAAAGCTTCTACTAGGTGTGCA
GCGCGCATTGCATCCGAAAGCTGTTGCTGTACGTGGCATCCTGACAGCAC
GAGCGTGTTTCAGAAAATCTGCGGAGAGTGGCGACGTAGCAAGGCTAAGA
GGCTTGAAAGGCGAGATCTTCGACGCTGGAAAAGCTTCGTGCACTGTTGC
GGGACAAACATGGGTGCCCCGTCCCGGCTAAGAGAAGTGTAACAAATGTC
CCGCAAAGCATTGGAGAACCAATGAATCGCCCCCCCCGCCCCCCCCTCCG
GCCGATGTTCTTTTTCCCGAAAGTTGTCCCGAAGCATCACCGCGGTGGAA
CAAATCCTTTTCGCTCAGGCCCCAAGCTTCCAAAGCTACGTGGATCGCGG
GACTTTCGACGCCCGGGCGACGCAGGCCTTCTCCCGTACAATGCATCTGA
CGTGTGAGGTGAGAACAGGGGCGAGGGAGAGGGAGAGGGAAGGAGGAAGA
GCGAGACAGAGAGATAGACAGGCAGGCCGGCAGGCCGGCAGGCAAGCAGG
CAGACAGAGTAGGTGGTAGGATGGGTATGCTGGTGCGAAGGAGAGTGAGT
GCCATGATACCTGGTACGAGACAAGGAAGGAGGAAAGAACAAAGGGCGTG
TAGGACTAGGCAGGCGTCGCGGCAGACGGGCAGATAGAACTCCACAGCGT
GAGCAGCCGCAGCGTGTGGTGCGGGATGAGACTACGTTCTGTGCTCGCTC
ACTGCGGCGGGGACACGAGGCGAATGTTCTCTCATCTCTGTTCCAATCCG
AATAAGAACCGCCATCCTTCAGCGAGCAACTTCGTCAGACAATTTCCCTC
CCACCTGGTCTCCCTCCGAAGCCTCTCCTTCTTCGAAGCAACCCTACCAG
CGGCCTCTCTTTCGCCCTGAGCGCATCATCATGCGAGCGTCGAGACAACT
CTAGCCTAGAGGCCCATCTTGACGCCTCGAGGCGTTTCTACTCTCCATCC
CGCTCGCCGGCTCCTCACCCCTGTTCCGTCCACGCCCGCATGCCTCCGCC
GCAAACCCGCCACCGAAGCCTCAACAATCACGCGAGGAACAAGCCGCGGG
CTGCCGAGAAGCACTCGCCTCCCTCAGGGACGTTACCGGGCTGCCGGCGC
CCGCGTCCGAGGGTGTTCGGGGCGACGGCGACGGCCAAAGCCGTCATCAC
CACGGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12482:1611..3417-

>mRNA_H-canaliculatus_F_contig12482.2101.1 ID=mRNA_H-canaliculatus_F_contig12482.2101.1|Name=mRNA_H-canaliculatus_F_contig12482.2101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12482:1611..3417- (Hapterophycus canaliculatus Oshoro5f female)
TCTTCTTTGGCCCTTCTCCTCCTCCCCCTCCCCCTCCTCCTCCTGCTTTT
GCGTTGCCAGAGAACCAGCGACCGCAATCCGTCGTCGTGGCGCTCGAGCC
CGCTGGTGACCTCCTCGCGCCAAGCGATCTCCTCCCTGCTCAGCAGGACC
GTGGAGCAATGGGGCAGCAAGCACGACAACTTGCAGAAGTCTTCTTTGGC
CCTTCTCCTCCTCCCCCTCCCCCTCCTCCTCCTGCTTTTGCGTTGCCAGA
GAACCAGCGACCGCAATCCGTCGTCGTGGCGCTCGAGCCCGCTGGTGACC
TCCTCGCGCCAAGCGATCTCCTCCCTGCTCAGCAGGACCGTGGAGCAATG
GGGCAGCAAGCACGACAACTTGCAGAAGTTGTCCCGAAGCATCACCGCGG
TGGAACAAATCCTTTTCGCTCAGGCCCCAAGCTTCCAAAGCTACGTGGAT
CGCGGGACTTTCGACGCCCGGGCGACGCAGGCCTTCTCCCGTACAATGCA
TCTGACGTGTGAGTTGTCCCGAAGCATCACCGCGGTGGAACAAATCCTTT
TCGCTCAGGCCCCAAGCTTCCAAAGCTACGTGGATCGCGGGACTTTCGAC
GCCCGGGCGACGCAGGCCTTCTCCCGTACAATGCATCTGACGTGTGAGCC
TCAACAATCACGCGAGGAACAAGCCGCGGGCTGCCGAGAAGCACTCGCCT
CCCTCAGGGACGTTACCGGGCTGCCGGCGCCCGCGTCCGAGGGTGTTCGG
GGCGACGGCGACGGCCAAAGCCGTCATCACCACGGCCCTCAACAATCACG
CGAGGAACAAGCCGCGGGCTGCCGAGAAGCACTCGCCTCCCTCAGGGACG
TTACCGGGCTGCCGGCGCCCGCGTCCGAGGGTGTTCGGGGCGACGGCGAC
GGCCAAAGCCGTCATCACCACGGC
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