mRNA_H-canaliculatus_F_contig1248.2097.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1248.2097.1
Unique NamemRNA_H-canaliculatus_F_contig1248.2097.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1248.2097.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 7.180e-69
Identity = 123/212 (58.02%), Postives = 147/212 (69.34%), Query Frame = 1 
Query:    1 LGSLFTPALSKACLISFVKEVVE-----RTVRAIRLGRVDAKNFFWLLKGFTSTKAAGILEGKGVRYTGPRSPSLTSSNTGSRQFYAHQGITSLLTTVSNNSCAGDRFVIFFSSGLDTCAQVITGSLSAFD------TNSNNDNSNNNRVGDSPAISQVPVIFGESCERLGRPAEEGDGVSGTGARVMSVSEWVGVYGECAESLLCAWVFSG 603
            +GS F PALS+  LI+FVKEVV      R V+AIRLGRVDAK+FFWL +GFTSTKA  +L  +G RY GPR  S TS+ TGS  F + QGITSLL++VS N   GDRFV+ FS G+D CAQ+ITG L A D      T S   + N   +G S       +IFGESCER GRPA E DG++G GARV+SV +WV VYGEC+ESLLCAWV+ G
Sbjct:    1 MGSFFYPALSERSLIAFVKEVVSPTEVGRAVKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPRPASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGESCERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAWVYRG 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1248.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI7.180e-6958.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1248contigH-canaliculatus_F_contig1248:16582..18102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004510.1
Exons3
Model size606
Cds size606
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1248.2097.1prot_H-canaliculatus_F_contig1248.2097.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1248 16582..18102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.1135874-CDS-H-canaliculatus_F_contig1248:16581..169111622928963.1135874-CDS-H-canaliculatus_F_contig1248:16581..16911Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 16582..16911 -
1696845631.7723205-CDS-H-canaliculatus_F_contig1248:16581..169111696845631.7723205-CDS-H-canaliculatus_F_contig1248:16581..16911Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 16582..16911 -
1622928963.1258478-CDS-H-canaliculatus_F_contig1248:17162..173751622928963.1258478-CDS-H-canaliculatus_F_contig1248:17162..17375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 17163..17375 -
1696845631.7818477-CDS-H-canaliculatus_F_contig1248:17162..173751696845631.7818477-CDS-H-canaliculatus_F_contig1248:17162..17375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 17163..17375 -
1622928963.1386344-CDS-H-canaliculatus_F_contig1248:18039..181021622928963.1386344-CDS-H-canaliculatus_F_contig1248:18039..18102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 18040..18102 -
1696845631.7925923-CDS-H-canaliculatus_F_contig1248:18039..181021696845631.7925923-CDS-H-canaliculatus_F_contig1248:18039..18102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1248 18040..18102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1248.2097.1

>prot_H-canaliculatus_F_contig1248.2097.1 ID=prot_H-canaliculatus_F_contig1248.2097.1|Name=mRNA_H-canaliculatus_F_contig1248.2097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
LGSLFTPALSKACLISFVKEVVERTVRAIRLGRVDAKNFFWLLKGFTSTK
AAGILEGKGVRYTGPRSPSLTSSNTGSRQFYAHQGITSLLTTVSNNSCAG
DRFVIFFSSGLDTCAQVITGSLSAFDTNSNNDNSNNNRVGDSPAISQVPV
IFGESCERLGRPAEEGDGVSGTGARVMSVSEWVGVYGECAESLLCAWVFS
G*
back to top

mRNA from alignment at H-canaliculatus_F_contig1248:16582..18102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1248.2097.1 ID=mRNA_H-canaliculatus_F_contig1248.2097.1|Name=mRNA_H-canaliculatus_F_contig1248.2097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1521bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1248:16582..18102- (Hapterophycus canaliculatus Oshoro5f female)
CTGGGCAGTCTCTTTACCCCGGCTTTGAGCAAGGCCTGCCTCATCTCCTT
CGTCAAGGAGGTCGTTCCTTCCTTGGAGGCGAGTGCGCTTCGCGAGAGTT
TCTTGAAAGTACCGGGCGCGTACTAAGCGGCTGGCCGTTGGAAAGGCTTA
CCACGAAGAAAAATTGTAGGCGTGTGCATGGATTAGGAGTGTTCGCTAGT
GGTACTGCCGAATGGCCGACGAAGTGTGATGATTCTCAGCGGAGACAAGA
CGGGAAAGCGCGTGGGCGTGTCGATGTCGGGAGGCATGGTTTGCTTGTTC
CATCGGCCGCGCGAAGCACTTTTCATGATGGTACTGGACTTGTAGTCAGC
GGGACGAACAGGTTAGGTATGAGTTTCATCGAAACGAAAGCATTCATCGC
GTGGTTTCTTTTGCGTCAAGTGCAACCTCCTGGGCGAGGCATCCTCATCA
GCTACCTTTGGCCAACAAAGAAGGGTAGAGAGGATCTGACCCTCCCGCTC
GCCACTGGCTCCAGTTCGGAATGTACACACCGGGGTGTTCTGCCTCAAAA
CAAGTAACATGTAACCTACAAAGGCCACCAACGCTTTGCTCTAGATGATT
CCACCAAATCCGCCGTTTTACTCAGAAAGCTCGGCCGGCTGGTCTGCTGC
TGTAGTTGTATCACAGCACAACACGCACCACCTCCTATCCTGAAGAAACC
GCCCGTTGGAATCCGGACAAAAAGCAGGTTGAGCGGACCGTCAGGGCCAT
CCGCTTAGGACGTGTAGACGCCAAGAATTTCTTCTGGCTGCTGAAGGGGT
TCACGTCAACCAAAGCTGCCGGAATTTTGGAGGGGAAAGGAGTGCGGTAC
ACCGGGCCTCGGTCACCTTCGCTAACATCTTCCAACACGGGGTCCCGGCA
GTTTTATGCTCACCAGGGAATCACCTCTCTCCTGACGACGGTGAGTACTG
TTTCGTATTAGCATCTTCTCACTTGACTGTTGCGCCATGTGGAATGACTC
CTCTGAGCGGAAAAACAAAAAATAACGATCGACCCCCCGGGCCTTGAATT
CGTGCTCGCAGCCTTGTGTTGAGTTCCGTCTTTGTGGTCGAACATGGAGC
CCTTCGTCCCTGCGTCCATCCCATAAACTGAAAACCGGTCCTCAAACATC
GATTCTATGCGCACCCGCTTCCCCTCTTCCTGTGGCTTAAGGTATCAAAC
AACAGCTGTGCTGGGGACAGGTTCGTTATCTTCTTTTCCAGTGGCCTCGA
CACCTGCGCGCAGGTGATCACCGGGAGCCTGTCGGCGTTCGACACTAACA
GCAACAACGACAACAGCAACAACAACCGTGTCGGAGATTCTCCCGCTATT
TCTCAAGTACCGGTGATCTTCGGAGAAAGCTGTGAGAGATTGGGGAGGCC
TGCCGAAGAGGGAGACGGTGTCAGTGGGACCGGGGCCCGGGTGATGAGTG
TGTCGGAGTGGGTTGGCGTATACGGGGAGTGCGCGGAATCGTTGCTCTGT
GCGTGGGTGTTTAGTGGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1248:16582..18102-

>mRNA_H-canaliculatus_F_contig1248.2097.1 ID=mRNA_H-canaliculatus_F_contig1248.2097.1|Name=mRNA_H-canaliculatus_F_contig1248.2097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1248:16582..18102- (Hapterophycus canaliculatus Oshoro5f female)
CTGGGCAGTCTCTTTACCCCGGCTTTGAGCAAGGCCTGCCTCATCTCCTT
CGTCAAGGAGGTCCTGGGCAGTCTCTTTACCCCGGCTTTGAGCAAGGCCT
GCCTCATCTCCTTCGTCAAGGAGGTCGTTGAGCGGACCGTCAGGGCCATC
CGCTTAGGACGTGTAGACGCCAAGAATTTCTTCTGGCTGCTGAAGGGGTT
CACGTCAACCAAAGCTGCCGGAATTTTGGAGGGGAAAGGAGTGCGGTACA
CCGGGCCTCGGTCACCTTCGCTAACATCTTCCAACACGGGGTCCCGGCAG
TTTTATGCTCACCAGGGAATCACCTCTCTCCTGACGACGGTTGAGCGGAC
CGTCAGGGCCATCCGCTTAGGACGTGTAGACGCCAAGAATTTCTTCTGGC
TGCTGAAGGGGTTCACGTCAACCAAAGCTGCCGGAATTTTGGAGGGGAAA
GGAGTGCGGTACACCGGGCCTCGGTCACCTTCGCTAACATCTTCCAACAC
GGGGTCCCGGCAGTTTTATGCTCACCAGGGAATCACCTCTCTCCTGACGA
CGGTATCAAACAACAGCTGTGCTGGGGACAGGTTCGTTATCTTCTTTTCC
AGTGGCCTCGACACCTGCGCGCAGGTGATCACCGGGAGCCTGTCGGCGTT
CGACACTAACAGCAACAACGACAACAGCAACAACAACCGTGTCGGAGATT
CTCCCGCTATTTCTCAAGTACCGGTGATCTTCGGAGAAAGCTGTGAGAGA
TTGGGGAGGCCTGCCGAAGAGGGAGACGGTGTCAGTGGGACCGGGGCCCG
GGTGATGAGTGTGTCGGAGTGGGTTGGCGTATACGGGGAGTGCGCGGAAT
CGTTGCTCTGTGCGTGGGTGTTTAGTGGGTGAGTATCAAACAACAGCTGT
GCTGGGGACAGGTTCGTTATCTTCTTTTCCAGTGGCCTCGACACCTGCGC
GCAGGTGATCACCGGGAGCCTGTCGGCGTTCGACACTAACAGCAACAACG
ACAACAGCAACAACAACCGTGTCGGAGATTCTCCCGCTATTTCTCAAGTA
CCGGTGATCTTCGGAGAAAGCTGTGAGAGATTGGGGAGGCCTGCCGAAGA
GGGAGACGGTGTCAGTGGGACCGGGGCCCGGGTGATGAGTGTGTCGGAGT
GGGTTGGCGTATACGGGGAGTGCGCGGAATCGTTGCTCTGTGCGTGGGTG
TTTAGTGGGTGA
back to top