mRNA_H-canaliculatus_F_contig10189.209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10189.209.1
Unique NamemRNA_H-canaliculatus_F_contig10189.209.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.420e-45
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD 279
            GVFD+LCSHLERGHEQLGRLEKKMEKDRLTNG+LTEEKE+NLEESRK YE LLGNVTSLASSLNRDMP LPE E EEEG GGISLWEGGVGGD
Sbjct:  680 GVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGD 772
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVG 273
            GV   L  HL   H+ L +LE++MEKDRL  GSLTEEKE+NLE S  AY  LL NV +L+ +L+ DMP LPE +EEEE  GG+ LW  GVG
Sbjct:  260 GVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEE-LGGVELWSSGVG 349
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.550e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
            G + +L S     H +L +LEK+ E+D+L  GSL+E +EK L+++RK  ET+  +V +LA SLN+D+P L E+E    G GG      + LW
Sbjct:  312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 403
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.610e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
            G + +L S     H +L +LEK+ E+D+L  GSL+E +EK L+++RK  ET+  +V +LA SLN+D+P L E+E    G GG      + LW
Sbjct:  361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 452
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.940e-9
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   16 LCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPL--PEQEEEEEGPGGISLW 258
            + S L   HE L  LE+K  +D L +GSLTEEKEK LE++RKA E L+  V++L  +L+ D P L   +  EEE+  G +SLW
Sbjct:  365 VSSKLLSDHEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLW 447
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.260e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
            G ++ L   L +   +L ++EK+ E+DRL  GSLTE +EK L+++RK  ETL  +V +++  ++  +P L  E EEE EG  G+ +W
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.370e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
            G ++ L   L +   +L ++EK+ E+DRL  GSLTE +EK L+++RK  ETL  +V +++  ++  +P L  E EEE EG  G+ +W
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.010e-7
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQE-EEEEGPG-GISLW 258
            G F +L   L   H +L +LEK+ E+DRL  GSLTE ++K L+++RK ++ L  +V  +   L+   P L E++ EEEE  G G+ +W
Sbjct:  396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVW 483
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A1E7FX38_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX38_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEE-EGPGGISLW 258
            G +  L   L     +L ++EK+ E DRL  GSLTE +EK L+++RK  E+L  +V +++  L+  MP L + +EEE EG  G+ +W
Sbjct:  385 GAYGFLSKSLVNTDAKLQKMEKRCETDRLLAGSLTEAREKGLQDARKLRESLQKSVEAMSDILDLIMPHLEKNKEEETEGGTGVEVW 471
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BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD)

HSP 1 Score: 53.5 bits (127), Expect = 3.510e-6
Identity = 26/86 (30.23%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    7 FDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEG 264
            ++ +C      H    +LE + E++    G +++   + LE ++  +E L  +V SLA +L+R++PPLP  ++++   GG+S+WEG
Sbjct:  294 YEMICKFYLAQHATFVKLEARNEREEANRGEVSDAHMQELENAKLLFEKLQTSVNSLADALDREVPPLPLNKDDDGNGGGLSVWEG 379
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LEF3_ECTSI4.420e-4590.32Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA1.420e-1957.14Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S1ZWS9_9STRA1.550e-1041.30Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QUB8_9STRA1.610e-1041.30Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A8J2S5M1_9STRA6.940e-946.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V0BH58_9STRA8.260e-839.08Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6V0BI57_9STRA8.370e-839.08Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6U5Q234_9STRA4.010e-739.77Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FX38_9STRA1.020e-639.08ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
K3XA48_GLOUD3.510e-630.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10189contigH-canaliculatus_F_contig10189:114..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.4e-39
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
Ec32 ortholog descriptionMIF4-like, type 1/2/3
Ec32 orthologEc-00_002070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928647.2270446-CDS-H-canaliculatus_F_contig10189:113..3071622928647.2270446-CDS-H-canaliculatus_F_contig10189:113..307Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10189 114..307 +
1696845511.984578-CDS-H-canaliculatus_F_contig10189:113..3071696845511.984578-CDS-H-canaliculatus_F_contig10189:113..307Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10189 114..307 +
1622928647.2409024-CDS-H-canaliculatus_F_contig10189:621..7061622928647.2409024-CDS-H-canaliculatus_F_contig10189:621..706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10189 622..706 +
1696845511.99609-CDS-H-canaliculatus_F_contig10189:621..7061696845511.99609-CDS-H-canaliculatus_F_contig10189:621..706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10189 622..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10189.209.1prot_H-canaliculatus_F_contig10189.209.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10189 114..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10189.209.1

>prot_H-canaliculatus_F_contig10189.209.1 ID=prot_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYE
TLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD
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mRNA from alignment at H-canaliculatus_F_contig10189:114..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=593bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGTTCGACTCGCTTTGCTCGCACCTTGAGCGTGGCCACGAGCAGCT
GGGACGCCTAGAGAAGAAGATGGAGAAGGACCGGCTGACGAACGGATCGC
TGACGGAGGAGAAGGAGAAGAACTTGGAGGAGAGCCGGAAGGCGTACGAG
ACGCTGCTGGGAAACGTCACCTCGCTGGCTTCTTCTCTCAACAGGTGACG
GGGGCGATCGCCGCGGGCGGCGCGGCGTTGTTGTCGCGGTGACCAGAGGA
CCGCCCGATTGGAAGCATGTGGTATCGTTGTTGTGGTGGTGGTTGTTGTT
GTTTGCTGTGGGAGAAGCGGGGCGATACACACGACAGACAGGAAAACCCG
CAGACAGGCTGAAAAACCAGCGCCGGGGGTAGCGGCACCGGCGTTGCCAA
CAGGATAATCTCCGAGGGTTCAGCAGGCACTAGCACTTGTTTTCCTTTTT
TGTGTATCTTGAGTGTCTCGCGGCCGCCGGTGGTGTCGCTTTACCACTGG
TTTTGCAGGGACATGCCGCCGCTGCCGGAGCAGGAAGAGGAAGAGGAAGG
CCCCGGAGGGATTAGCCTGTGGGAGGGCGGTGTCGGGGGGGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10189:114..706+

>mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGTTCGACTCGCTTTGCTCGCACCTTGAGCGTGGCCACGAGCAGCT
GGGACGCCTAGAGAAGAAGATGGAGAAGGACCGGCTGACGAACGGATCGC
TGACGGAGGAGAAGGAGAAGAACTTGGAGGAGAGCCGGAAGGCGTACGAG
ACGCTGCTGGGAAACGTCACCTCGCTGGCTTCTTCTCTCAACAGGGGGTG
TTCGACTCGCTTTGCTCGCACCTTGAGCGTGGCCACGAGCAGCTGGGACG
CCTAGAGAAGAAGATGGAGAAGGACCGGCTGACGAACGGATCGCTGACGG
AGGAGAAGGAGAAGAACTTGGAGGAGAGCCGGAAGGCGTACGAGACGCTG
CTGGGAAACGTCACCTCGCTGGCTTCTTCTCTCAACAGGGACATGCCGCC
GCTGCCGGAGCAGGAAGAGGAAGAGGAAGGCCCCGGAGGGATTAGCCTGT
GGGAGGGCGGTGTCGGGGGGGACGGACATGCCGCCGCTGCCGGAGCAGGA
AGAGGAAGAGGAAGGCCCCGGAGGGATTAGCCTGTGGGAGGGCGGTGTCG
GGGGGGAC
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