mRNA_H-canaliculatus_F_contig12460.2088.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12460.2088.1
Unique NamemRNA_H-canaliculatus_F_contig12460.2088.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12460.2088.1 vs. uniprot
Match: D7FW82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW82_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.890e-26
Identity = 83/199 (41.71%), Postives = 112/199 (56.28%), Query Frame = 1 
Query:   28 SSAEKSPWFKEGTLVVLNCGRGSKP-GAPHPTVPIEDLLGRTARVIRAPEPHMKASPGYHLVEFQRWEGGPDAVVKLKTRARFLKPAHVK----PSVASSPETDVVTTAAGSVNAAAAGISAGVQKTSAAKGAXXXXXXXXNAPKGSRMSTRPRRMSARVALKAVKRSGSVEREEAGDEQKPPAVAGIKRGKWRRKEEV 609
            S+  KS W+ +GT+VVL+C   ++     +P +P+ DLLGR ARVIR  EP  +    YHLVEFQ WEGGPD VV L+ +A+ LKPA +     P+V S      V+T  GS +A  +  +A  + T A  GA         A      +TRPRR S R A+KA K+S SV+  EAG EQ P A A + + + +  EE 
Sbjct:  527 STDVKSSWYSKGTMVVLHCDSPAQVRSTSNPVLPLSDLLGRPARVIR--EPTHRMGQRYHLVEFQPWEGGPDTVVTLRAKAKLLKPAPLDSVFAPAVVSDGRDSGVSTDGGSASARLS--TARAESTPAGAGAAQRVSRKTVA------ATRPRRRSTRGAIKATKQSVSVDAGEAGCEQPPLATARVVKREGKGNEEA 715
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12460.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW82_ECTSI7.890e-2641.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12460contigH-canaliculatus_F_contig12460:142..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size751
Cds size750
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.684844-CDS-H-canaliculatus_F_contig12460:141..2911622928961.684844-CDS-H-canaliculatus_F_contig12460:141..291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 142..291 +
1696845631.0768235-CDS-H-canaliculatus_F_contig12460:141..2911696845631.0768235-CDS-H-canaliculatus_F_contig12460:141..291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 142..291 +
1622928961.7265887-CDS-H-canaliculatus_F_contig12460:1035..16351622928961.7265887-CDS-H-canaliculatus_F_contig12460:1035..1635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 1036..1635 +
1696845631.0853565-CDS-H-canaliculatus_F_contig12460:1035..16351696845631.0853565-CDS-H-canaliculatus_F_contig12460:1035..1635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 1036..1635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12460.2088.1prot_H-canaliculatus_F_contig12460.2088.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12460 142..1635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12460.2088.1

>prot_H-canaliculatus_F_contig12460.2088.1 ID=prot_H-canaliculatus_F_contig12460.2088.1|Name=mRNA_H-canaliculatus_F_contig12460.2088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=250bp
AGEDKQHVLSSAEKSPWFKEGTLVVLNCGRGSKPGAPHPTVPIEDLLGRT
ARVIRAPEPHMKASPGYHLVEFQRWEGGPDAVVKLKTRARFLKPAHVKPS
VASSPETDVVTTAAGSVNAAAAGISAGVQKTSAAKGAGAGEGAAQNAPKG
SRMSTRPRRMSARVALKAVKRSGSVEREEAGDEQKPPAVAGIKRGKWRRK
EEVGGGDEMEVDDDDDEEEEEQEEEEEEYQKEEDEDDDDDEDEQEKQEHQ
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mRNA from alignment at H-canaliculatus_F_contig12460:142..1635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12460.2088.1 ID=mRNA_H-canaliculatus_F_contig12460.2088.1|Name=mRNA_H-canaliculatus_F_contig12460.2088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12460:142..1635+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGGTGAGGATAAACAACACGTTCTCTCTTCTGCGGAGAAGAGTCCTTG
GTTCAAGGAAGGCACCTTGGTCGTCCTCAACTGCGGCCGGGGATCCAAAC
CAGGTGCCCCCCATCCCACCGTCCCGATTGAGGATCTTCTGGGCAGAACG
GTGAGAGGATTAGCCCGATCAGGTTCATGTTACCAGGGTGCGAATGTCAG
TGCCAGCGGTGACCTTCCCGTGTTAGAACGCCTGACGGTTCTCCGGCATG
TGAGGGATCTTCTCAGTTCTCAGGTGTTTTTCGGAGGTATTGATAGCTTT
CTCATGAACAAAGACTTCACCACCGCCCACAGAAACGGGCAGCATTCCGA
CGCCATTTCTGAGAAGTGCAGCTGGCGGGGACGTACCTTCGACCGTTGAC
AGGACATCACAGCCTTCAAAGAGTCGTTGAAAAAAGTGCCTCTACGCTTT
CATTTCTCGCGAGGTACACGCAGGCAGCGTCCTCGAATTCGGAATGGGTT
TGTTGAACTTTTGGTGCTTCTGGTGCGCATATTGCGCAACCGTCTTGTGA
ATCATGAATATTGCTGCGGTATGATTCCGGCGGCCGACGCTGTTTCGTCT
GCACGAAAGCACCCACCCACGCAGCTGCCGAGTACACTGCTCTCTGTTAT
TAGCGTGAAATGCGTGCGCGGTACAGGTGTGGTGTGGTCGACCCTCTGTG
GTCTACTCTCGATCGTGATCCCGCCTTCGGTCTTGTTTGCCAGCGATGTG
GACCCCGAAAAGGCGACAGGTGCATGCACGGAGTGTGTCTCTGTCCTCGC
CACGCCTGAAATGCAACCTACGAACTCATCCTCACCTTTCTGGCCACATC
GCTTCCTGCCTGCGTGCTGCCCTTCACTGCACACAACGCGACAGGCGCGA
GTGATCCGAGCACCCGAGCCGCACATGAAAGCTTCACCGGGGTACCACTT
GGTGGAGTTTCAGCGGTGGGAAGGTGGTCCCGACGCAGTGGTGAAACTGA
AGACTAGAGCGAGGTTCCTCAAGCCAGCTCACGTGAAACCCTCTGTTGCG
TCATCTCCGGAGACTGACGTCGTCACGACCGCCGCTGGTAGTGTCAATGC
CGCCGCCGCCGGCATCTCGGCGGGCGTGCAAAAAACGAGTGCAGCGAAGG
GCGCTGGCGCAGGAGAAGGCGCGGCGCAGAATGCCCCGAAGGGGTCTAGG
ATGTCCACGAGGCCGCGGAGGATGTCGGCAAGGGTGGCTTTGAAGGCTGT
GAAGCGGAGCGGATCGGTTGAGAGAGAGGAAGCAGGAGATGAGCAGAAGC
CACCGGCAGTGGCGGGGATCAAGAGAGGCAAATGGAGGAGAAAAGAGGAA
GTTGGTGGGGGGGACGAGATGGAGGTCGATGATGATGATGATGAGGAAGA
GGAGGAGCAGGAGGAGGAGGAGGAGGAATATCAAAAGGAGGAGGATGAAG
ACGACGACGACGACGAAGACGAGCAGGAGAAGCAGGAGCACCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12460:142..1635+

>mRNA_H-canaliculatus_F_contig12460.2088.1 ID=mRNA_H-canaliculatus_F_contig12460.2088.1|Name=mRNA_H-canaliculatus_F_contig12460.2088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12460:142..1635+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGGTGAGGATAAACAACACGTTCTCTCTTCTGCGGAGAAGAGTCCTTG
GTTCAAGGAAGGCACCTTGGTCGTCCTCAACTGCGGCCGGGGATCCAAAC
CAGGTGCCCCCCATCCCACCGTCCCGATTGAGGATCTTCTGGGCAGAACG
GCTGGTGAGGATAAACAACACGTTCTCTCTTCTGCGGAGAAGAGTCCTTG
GTTCAAGGAAGGCACCTTGGTCGTCCTCAACTGCGGCCGGGGATCCAAAC
CAGGTGCCCCCCATCCCACCGTCCCGATTGAGGATCTTCTGGGCAGAACG
GCGCGAGTGATCCGAGCACCCGAGCCGCACATGAAAGCTTCACCGGGGTA
CCACTTGGTGGAGTTTCAGCGGTGGGAAGGTGGTCCCGACGCAGTGGTGA
AACTGAAGACTAGAGCGAGGTTCCTCAAGCCAGCTCACGTGAAACCCTCT
GTTGCGTCATCTCCGGAGACTGACGTCGTCACGACCGCCGCTGGTAGTGT
CAATGCCGCCGCCGCCGGCATCTCGGCGGGCGTGCAAAAAACGAGTGCAG
CGAAGGGCGCTGGCGCAGGAGAAGGCGCGGCGCAGAATGCCCCGAAGGGG
TCTAGGATGTCCACGAGGCCGCGGAGGATGTCGGCAAGGGTGGCTTTGAA
GGCTGTGAAGCGGAGCGGATCGGTTGAGAGAGAGGAAGCAGGAGATGAGC
AGAAGCCACCGGCAGTGGCGGGGATCAAGAGAGGCAAATGGAGGAGAAAA
GAGGAAGTTGGTGGGGGGGACGAGATGGAGGTCGATGATGATGATGATGA
GGAAGAGGAGGAGCAGGAGGAGGAGGAGGAGGAATATCAAAAGGAGGAGG
ATGAAGACGACGACGACGACGAAGACGAGCAGGAGAAGCAGGAGCACCAG
GCGCGAGTGATCCGAGCACCCGAGCCGCACATGAAAGCTTCACCGGGGTA
CCACTTGGTGGAGTTTCAGCGGTGGGAAGGTGGTCCCGACGCAGTGGTGA
AACTGAAGACTAGAGCGAGGTTCCTCAAGCCAGCTCACGTGAAACCCTCT
GTTGCGTCATCTCCGGAGACTGACGTCGTCACGACCGCCGCTGGTAGTGT
CAATGCCGCCGCCGCCGGCATCTCGGCGGGCGTGCAAAAAACGAGTGCAG
CGAAGGGCGCTGGCGCAGGAGAAGGCGCGGCGCAGAATGCCCCGAAGGGG
TCTAGGATGTCCACGAGGCCGCGGAGGATGTCGGCAAGGGTGGCTTTGAA
GGCTGTGAAGCGGAGCGGATCGGTTGAGAGAGAGGAAGCAGGAGATGAGC
AGAAGCCACCGGCAGTGGCGGGGATCAAGAGAGGCAAATGGAGGAGAAAA
GAGGAAGTTGGTGGGGGGGACGAGATGGAGGTCGATGATGATGATGATGA
GGAAGAGGAGGAGCAGGAGGAGGAGGAGGAGGAATATCAAAAGGAGGAGG
ATGAAGACGACGACGACGACGAAGACGAGCAGGAGAAGCAGGAGCACCAG
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