mRNA_H-canaliculatus_F_contig12448.2077.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12448.2077.1
Unique NamemRNA_H-canaliculatus_F_contig12448.2077.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12448.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12448contigH-canaliculatus_F_contig12448:2180..2592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size413
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.2810354-UTR-H-canaliculatus_F_contig12448:2179..22261622928960.2810354-UTR-H-canaliculatus_F_contig12448:2179..2226Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12448 2180..2226 +
1696845630.569441-UTR-H-canaliculatus_F_contig12448:2179..22261696845630.569441-UTR-H-canaliculatus_F_contig12448:2179..2226Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12448 2180..2226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.3056912-CDS-H-canaliculatus_F_contig12448:2226..25921622928960.3056912-CDS-H-canaliculatus_F_contig12448:2226..2592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12448 2227..2592 +
1696845630.5780492-CDS-H-canaliculatus_F_contig12448:2226..25921696845630.5780492-CDS-H-canaliculatus_F_contig12448:2226..2592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12448 2227..2592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12448.2077.1prot_H-canaliculatus_F_contig12448.2077.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12448 2227..2592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12448.2077.1

>prot_H-canaliculatus_F_contig12448.2077.1 ID=prot_H-canaliculatus_F_contig12448.2077.1|Name=mRNA_H-canaliculatus_F_contig12448.2077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
MRSLSAVGRCFSPPLFLSQVSHQPMPSPPPPENQNRRLVGARRATTPLCR
TVLSLLHVATKYNGLRQENRIKVEKKRANNFTQQASDRDHPSTCPSGALV
LTTAVLLNCLSPSATNNHRVEK
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mRNA from alignment at H-canaliculatus_F_contig12448:2180..2592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12448.2077.1 ID=mRNA_H-canaliculatus_F_contig12448.2077.1|Name=mRNA_H-canaliculatus_F_contig12448.2077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=413bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12448:2180..2592+ (Hapterophycus canaliculatus Oshoro5f female)
CGGTTATGCGGCGATGAACAGCGGCGTGGCGAAAATGTTCACGACACATG
CGCTCTTTATCTGCTGTAGGGAGATGTTTTTCTCCCCCTCTCTTTCTTTC
TCAAGTCTCCCACCAGCCAATGCCCTCTCCTCCTCCTCCGGAAAACCAGA
ACCGAAGGCTTGTGGGCGCACGCCGTGCGACGACGCCCCTCTGCCGTACA
GTTCTATCTCTTCTTCATGTAGCAACAAAATACAACGGCCTTCGTCAAGA
AAACCGAATCAAGGTGGAAAAGAAGCGTGCTAATAATTTCACGCAACAAG
CAAGCGACAGAGATCACCCGAGCACCTGTCCTTCCGGTGCCCTGGTGCTG
ACCACCGCCGTTCTACTTAACTGTCTTTCCCCTTCGGCCACCAACAACCA
CCGCGTGGAAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12448:2180..2592+

>mRNA_H-canaliculatus_F_contig12448.2077.1 ID=mRNA_H-canaliculatus_F_contig12448.2077.1|Name=mRNA_H-canaliculatus_F_contig12448.2077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12448:2180..2592+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCTCTTTATCTGCTGTAGGGAGATGTTTTTCTCCCCCTCTCTTTCT
TTCTCAAGTCTCCCACCAGCCAATGCCCTCTCCTCCTCCTCCGGAAAACC
AGAACCGAAGGCTTGTGGGCGCACGCCGTGCGACGACGCCCCTCTGCCGT
ACAGTTCTATCTCTTCTTCATGTAGCAACAAAATACAACGGCCTTCGTCA
AGAAAACCGAATCAAGGTGGAAAAGAAGCGTGCTAATAATTTCACGCAAC
AAGCAAGCGACAGAGATCACCCGAGCACCTGTCCTTCCGGTGCCCTGGTG
CTGACCACCGCCGTTCTACTTAACTGTCTTTCCCCTTCGGCCACCAACAA
CCACCGCGTGGAAAAGATGCGCTCTTTATCTGCTGTAGGGAGATGTTTTT
CTCCCCCTCTCTTTCTTTCTCAAGTCTCCCACCAGCCAATGCCCTCTCCT
CCTCCTCCGGAAAACCAGAACCGAAGGCTTGTGGGCGCACGCCGTGCGAC
GACGCCCCTCTGCCGTACAGTTCTATCTCTTCTTCATGTAGCAACAAAAT
ACAACGGCCTTCGTCAAGAAAACCGAATCAAGGTGGAAAAGAAGCGTGCT
AATAATTTCACGCAACAAGCAAGCGACAGAGATCACCCGAGCACCTGTCC
TTCCGGTGCCCTGGTGCTGACCACCGCCGTTCTACTTAACTGTCTTTCCC
CTTCGGCCACCAACAACCACCGCGTGGAAAAG
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