mRNA_H-canaliculatus_F_contig1243.2068.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1243.2068.1
Unique NamemRNA_H-canaliculatus_F_contig1243.2068.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1243.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1243contigH-canaliculatus_F_contig1243:25609..26406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size788
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1243.2068.1prot_H-canaliculatus_F_contig1243.2068.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1243 25609..26166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.8047237-CDS-H-canaliculatus_F_contig1243:25608..261661622928958.8047237-CDS-H-canaliculatus_F_contig1243:25608..26166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 25609..26166 -
1696845629.9007535-CDS-H-canaliculatus_F_contig1243:25608..261661696845629.9007535-CDS-H-canaliculatus_F_contig1243:25608..26166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 25609..26166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.816059-UTR-H-canaliculatus_F_contig1243:26166..262841622928958.816059-UTR-H-canaliculatus_F_contig1243:26166..26284Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 26167..26284 -
1696845629.9124548-UTR-H-canaliculatus_F_contig1243:26166..262841696845629.9124548-UTR-H-canaliculatus_F_contig1243:26166..26284Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 26167..26284 -
1622928958.8340127-UTR-H-canaliculatus_F_contig1243:26294..264061622928958.8340127-UTR-H-canaliculatus_F_contig1243:26294..26406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 26295..26406 -
1696845629.9265418-UTR-H-canaliculatus_F_contig1243:26294..264061696845629.9265418-UTR-H-canaliculatus_F_contig1243:26294..26406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 26295..26406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1243.2068.1

>prot_H-canaliculatus_F_contig1243.2068.1 ID=prot_H-canaliculatus_F_contig1243.2068.1|Name=mRNA_H-canaliculatus_F_contig1243.2068.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=186bp
MGGTRSRQRPLQREPALGQARKEDGGLGKGDDSEGSDSDESSASSSASVA
AAALEFEAFLGEFESGGAGGSVGGVGGLGGVVGSRKSEPSSNLTRKAEAT
PAGAVSSRRKKEGLTSPSPFSGPSRGRSGKRKPGEGVGVTAAAAAAAAGG
PRRGEKQHRKVEARVVTQAGRARSIFADVNKAGRGG
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mRNA from alignment at H-canaliculatus_F_contig1243:25609..26406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1243.2068.1 ID=mRNA_H-canaliculatus_F_contig1243.2068.1|Name=mRNA_H-canaliculatus_F_contig1243.2068.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:25609..26406- (Hapterophycus canaliculatus Oshoro5f female)
GGGCGCGGCCGGGGCAGAGGTAGAGGCAGCGGAAGAGGAGCGGGCGGCAG
GCAAGGTGGTGAACGCAAGGGCGCCGGGGAAGGAGGAATCGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAATGAGAAGTCGTCGGCGTCGAGTGAG
CACGACGATGACGATCTCGACGACCTGCTGGACGACTTGGACGGGGACGG
CAGCGACAAAGACGACGGTCGTGAAGGGGACGACGGGACGATGGGCGGAA
CTCGGAGTCGCCAGCGGCCCTTGCAACGGGAACCCGCCCTAGGGCAAGCG
AGGAAAGAGGACGGGGGCCTGGGGAAAGGCGACGACAGCGAGGGCTCCGA
CAGCGACGAGTCCTCGGCGTCGTCGAGTGCTTCGGTCGCCGCCGCCGCCC
TCGAGTTCGAGGCATTCTTGGGCGAGTTCGAAAGCGGCGGCGCCGGTGGA
AGCGTGGGCGGAGTTGGTGGATTAGGCGGTGTTGTTGGATCGAGAAAAAG
CGAGCCGTCTTCGAACCTTACACGGAAAGCGGAAGCAACACCGGCAGGGG
CTGTAAGCAGCCGCCGGAAGAAGGAGGGGTTGACGTCGCCGTCGCCGTTT
AGCGGACCATCACGCGGCCGCTCAGGGAAGCGAAAACCGGGAGAGGGGGT
TGGGGTGACGGCAGCAGCAGCAGCAGCAGCAGCAGGCGGTCCCAGGCGGG
GGGAGAAGCAGCACAGAAAGGTCGAAGCGAGAGTCGTCACGCAGGCTGGT
CGTGCGAGGAGCATCTTTGCCGACGTGAACAAGGCTGGCCGCGGAGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1243:25609..26406-

>mRNA_H-canaliculatus_F_contig1243.2068.1 ID=mRNA_H-canaliculatus_F_contig1243.2068.1|Name=mRNA_H-canaliculatus_F_contig1243.2068.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1116bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:25609..26406- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGAACTCGGAGTCGCCAGCGGCCCTTGCAACGGGAACCCGCCCT
AGGGCAAGCGAGGAAAGAGGACGGGGGCCTGGGGAAAGGCGACGACAGCG
AGGGCTCCGACAGCGACGAGTCCTCGGCGTCGTCGAGTGCTTCGGTCGCC
GCCGCCGCCCTCGAGTTCGAGGCATTCTTGGGCGAGTTCGAAAGCGGCGG
CGCCGGTGGAAGCGTGGGCGGAGTTGGTGGATTAGGCGGTGTTGTTGGAT
CGAGAAAAAGCGAGCCGTCTTCGAACCTTACACGGAAAGCGGAAGCAACA
CCGGCAGGGGCTGTAAGCAGCCGCCGGAAGAAGGAGGGGTTGACGTCGCC
GTCGCCGTTTAGCGGACCATCACGCGGCCGCTCAGGGAAGCGAAAACCGG
GAGAGGGGGTTGGGGTGACGGCAGCAGCAGCAGCAGCAGCAGCAGGCGGT
CCCAGGCGGGGGGAGAAGCAGCACAGAAAGGTCGAAGCGAGAGTCGTCAC
GCAGGCTGGTCGTGCGAGGAGCATCTTTGCCGACGTGAACAAGGCTGGCC
GCGGAGGGATGGGCGGAACTCGGAGTCGCCAGCGGCCCTTGCAACGGGAA
CCCGCCCTAGGGCAAGCGAGGAAAGAGGACGGGGGCCTGGGGAAAGGCGA
CGACAGCGAGGGCTCCGACAGCGACGAGTCCTCGGCGTCGTCGAGTGCTT
CGGTCGCCGCCGCCGCCCTCGAGTTCGAGGCATTCTTGGGCGAGTTCGAA
AGCGGCGGCGCCGGTGGAAGCGTGGGCGGAGTTGGTGGATTAGGCGGTGT
TGTTGGATCGAGAAAAAGCGAGCCGTCTTCGAACCTTACACGGAAAGCGG
AAGCAACACCGGCAGGGGCTGTAAGCAGCCGCCGGAAGAAGGAGGGGTTG
ACGTCGCCGTCGCCGTTTAGCGGACCATCACGCGGCCGCTCAGGGAAGCG
AAAACCGGGAGAGGGGGTTGGGGTGACGGCAGCAGCAGCAGCAGCAGCAG
CAGGCGGTCCCAGGCGGGGGGAGAAGCAGCACAGAAAGGTCGAAGCGAGA
GTCGTCACGCAGGCTGGTCGTGCGAGGAGCATCTTTGCCGACGTGAACAA
GGCTGGCCGCGGAGGG
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