mRNA_H-canaliculatus_F_contig1243.2066.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1243.2066.1
Unique NamemRNA_H-canaliculatus_F_contig1243.2066.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1243.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1243contigH-canaliculatus_F_contig1243:22947..23783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size837
Cds size654
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.728323-CDS-H-canaliculatus_F_contig1243:22946..236001622928958.728323-CDS-H-canaliculatus_F_contig1243:22946..23600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 22947..23600 +
1696845629.877325-CDS-H-canaliculatus_F_contig1243:22946..236001696845629.877325-CDS-H-canaliculatus_F_contig1243:22946..23600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 22947..23600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.752113-UTR-H-canaliculatus_F_contig1243:23600..237831622928958.752113-UTR-H-canaliculatus_F_contig1243:23600..23783Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 23601..23783 +
1696845629.8914528-UTR-H-canaliculatus_F_contig1243:23600..237831696845629.8914528-UTR-H-canaliculatus_F_contig1243:23600..23783Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 23601..23783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1243.2066.1prot_H-canaliculatus_F_contig1243.2066.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1243 22947..23600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1243.2066.1

>prot_H-canaliculatus_F_contig1243.2066.1 ID=prot_H-canaliculatus_F_contig1243.2066.1|Name=mRNA_H-canaliculatus_F_contig1243.2066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
PSPWTRLLLDRVDLEPPPNLCPTQGPCALFSQGHRHHRYSYHHRQHHDLL
RRLSYRKKFHRASAPDVHLPRLVPLPSRPPPPRLNLGKLGRPVYRRALPH
RHHRRSRSRHLSRHRRLKTLRQAGAAPRLPSPSPPPRLPAPPLPIAFPPS
SLPTSPWPRLRHPVPPLRHRRRLGRLGGRSLTTFPPARLFLPPASRSRAP
RRASTPRRRPARQRTPP*
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mRNA from alignment at H-canaliculatus_F_contig1243:22947..23783+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1243.2066.1 ID=mRNA_H-canaliculatus_F_contig1243.2066.1|Name=mRNA_H-canaliculatus_F_contig1243.2066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=837bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:22947..23783+ (Hapterophycus canaliculatus Oshoro5f female)
CCTTCACCTTGGACCCGTCTTCTTCTTGACCGTGTGGATCTCGAACCTCC
TCCAAACCTTTGTCCGACCCAGGGGCCTTGTGCTCTCTTCTCCCAGGGAC
ACCGTCATCACCGCTACAGCTATCATCATCGCCAACACCACGATCTTCTG
CGCCGTCTGAGCTATCGGAAGAAGTTTCACCGGGCTTCCGCTCCGGATGT
CCATCTCCCCCGTCTAGTGCCCCTACCCTCTCGTCCACCTCCTCCAAGAT
TAAATCTTGGCAAGCTCGGACGGCCCGTCTACCGCCGGGCTCTCCCCCAC
AGACACCACCGCCGCTCCCGTTCTCGCCATCTCTCCCGGCACCGCCGACT
GAAGACGCTCCGCCAGGCCGGCGCCGCCCCTCGTCTTCCTTCTCCTTCTC
CTCCTCCTCGTCTCCCAGCTCCGCCCCTACCAATCGCGTTCCCTCCAAGC
AGCCTCCCGACCTCTCCGTGGCCTCGCCTTCGCCACCCGGTTCCTCCCCT
GAGACACCGGCGTCGCCTCGGTCGTCTTGGGGGTAGGTCTTTGACAACTT
TCCCTCCCGCGCGTCTTTTTCTGCCACCTGCTTCCCGTTCCCGCGCTCCG
CGGAGAGCTTCAACCCCTCGCCGACGGCCTGCTCGTCAACGGACACCGCC
CTGACACCGCTGTCGCCACCTCTGCCGCCACCTCTGCCGTCAACGCTGCC
CGAAGAGGTGTCCCCGGGCCCCGGGTTCGAATTTCCGCCGCCTCTCTCTT
CCTCGCCCCTCTGCCCCATCTCGACCCCCTTCAAGAAGTCTTCGAACCCC
TTGACAATCTCTTCGTCTGCCGAATTTTCCCCAGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1243:22947..23783+

>mRNA_H-canaliculatus_F_contig1243.2066.1 ID=mRNA_H-canaliculatus_F_contig1243.2066.1|Name=mRNA_H-canaliculatus_F_contig1243.2066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:22947..23783+ (Hapterophycus canaliculatus Oshoro5f female)
CCTTCACCTTGGACCCGTCTTCTTCTTGACCGTGTGGATCTCGAACCTCC
TCCAAACCTTTGTCCGACCCAGGGGCCTTGTGCTCTCTTCTCCCAGGGAC
ACCGTCATCACCGCTACAGCTATCATCATCGCCAACACCACGATCTTCTG
CGCCGTCTGAGCTATCGGAAGAAGTTTCACCGGGCTTCCGCTCCGGATGT
CCATCTCCCCCGTCTAGTGCCCCTACCCTCTCGTCCACCTCCTCCAAGAT
TAAATCTTGGCAAGCTCGGACGGCCCGTCTACCGCCGGGCTCTCCCCCAC
AGACACCACCGCCGCTCCCGTTCTCGCCATCTCTCCCGGCACCGCCGACT
GAAGACGCTCCGCCAGGCCGGCGCCGCCCCTCGTCTTCCTTCTCCTTCTC
CTCCTCCTCGTCTCCCAGCTCCGCCCCTACCAATCGCGTTCCCTCCAAGC
AGCCTCCCGACCTCTCCGTGGCCTCGCCTTCGCCACCCGGTTCCTCCCCT
GAGACACCGGCGTCGCCTCGGTCGTCTTGGGGGTAGGTCTTTGACAACTT
TCCCTCCCGCGCGTCTTTTTCTGCCACCTGCTTCCCGTTCCCGCGCTCCG
CGGAGAGCTTCAACCCCTCGCCGACGGCCTGCTCGTCAACGGACACCGCC
CTGACCTTCACCTTGGACCCGTCTTCTTCTTGACCGTGTGGATCTCGAAC
CTCCTCCAAACCTTTGTCCGACCCAGGGGCCTTGTGCTCTCTTCTCCCAG
GGACACCGTCATCACCGCTACAGCTATCATCATCGCCAACACCACGATCT
TCTGCGCCGTCTGAGCTATCGGAAGAAGTTTCACCGGGCTTCCGCTCCGG
ATGTCCATCTCCCCCGTCTAGTGCCCCTACCCTCTCGTCCACCTCCTCCA
AGATTAAATCTTGGCAAGCTCGGACGGCCCGTCTACCGCCGGGCTCTCCC
CCACAGACACCACCGCCGCTCCCGTTCTCGCCATCTCTCCCGGCACCGCC
GACTGAAGACGCTCCGCCAGGCCGGCGCCGCCCCTCGTCTTCCTTCTCCT
TCTCCTCCTCCTCGTCTCCCAGCTCCGCCCCTACCAATCGCGTTCCCTCC
AAGCAGCCTCCCGACCTCTCCGTGGCCTCGCCTTCGCCACCCGGTTCCTC
CCCTGAGACACCGGCGTCGCCTCGGTCGTCTTGGGGGTAGGTCTTTGACA
ACTTTCCCTCCCGCGCGTCTTTTTCTGCCACCTGCTTCCCGTTCCCGCGC
TCCGCGGAGAGCTTCAACCCCTCGCCGACGGCCTGCTCGTCAACGGACAC
CGCCCTGA
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