mRNA_H-canaliculatus_F_contig1243.2067.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1243.2067.1
Unique NamemRNA_H-canaliculatus_F_contig1243.2067.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1243.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1243contigH-canaliculatus_F_contig1243:23895..25607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1700
Cds size1218
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1243.2067.1prot_H-canaliculatus_F_contig1243.2067.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1243 24162..25392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.6286836-UTR-H-canaliculatus_F_contig1243:23894..241611622928958.6286836-UTR-H-canaliculatus_F_contig1243:23894..24161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 23895..24161 -
1696845629.8354776-UTR-H-canaliculatus_F_contig1243:23894..241611696845629.8354776-UTR-H-canaliculatus_F_contig1243:23894..24161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 23895..24161 -
1622928958.6749132-UTR-H-canaliculatus_F_contig1243:25392..256071622928958.6749132-UTR-H-canaliculatus_F_contig1243:25392..25607Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 25393..25607 -
1696845629.8668637-UTR-H-canaliculatus_F_contig1243:25392..256071696845629.8668637-UTR-H-canaliculatus_F_contig1243:25392..25607Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 25393..25607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.6408958-CDS-H-canaliculatus_F_contig1243:24161..242321622928958.6408958-CDS-H-canaliculatus_F_contig1243:24161..24232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 24162..24232 -
1696845629.8468912-CDS-H-canaliculatus_F_contig1243:24161..242321696845629.8468912-CDS-H-canaliculatus_F_contig1243:24161..24232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 24162..24232 -
1622928958.6553175-CDS-H-canaliculatus_F_contig1243:24245..253921622928958.6553175-CDS-H-canaliculatus_F_contig1243:24245..25392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 24246..25392 -
1696845629.8568368-CDS-H-canaliculatus_F_contig1243:24245..253921696845629.8568368-CDS-H-canaliculatus_F_contig1243:24245..25392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 24246..25392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1243.2067.1

>prot_H-canaliculatus_F_contig1243.2067.1 ID=prot_H-canaliculatus_F_contig1243.2067.1|Name=mRNA_H-canaliculatus_F_contig1243.2067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=406bp
MSETRSRQRTSQGKPVLGQAREGDEGRGKGDDSESSDGDESSASSSGSIA
AAALEFEAFLGDFESGGTGGSRRSVGVSGGGGGVGESRRNAPTPKPTQKM
AAATMGRADSRSSKGNTPTSSLLSGSLPRRSGKRKLGEVRGGPAAGDKVE
GGKRQRRLAEARVAAQAGHPRSLFADVNKAGREGRGRGRGRGSAVGNGRG
ARGKHGGERKGAEADSRSGGGGGGGSGSLSTSSKGDDDDLDVMLDDLDGD
GGDEGVDRGGGGRGRRSSGGDGNTSESPSHQRSLGGKSAARRGATGGEGR
KQSDESEGSDSDSSSASSSSSIAAAALEFEAFLGDLESGGGSGTNGTGGG
KGSAGGSDGIGGSSKTAPTSKPTRQVAAPSAGTARRGDYRRRRHLADQDL
RPPGQ*
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mRNA from alignment at H-canaliculatus_F_contig1243:23895..25607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1243.2067.1 ID=mRNA_H-canaliculatus_F_contig1243.2067.1|Name=mRNA_H-canaliculatus_F_contig1243.2067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1713bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:23895..25607- (Hapterophycus canaliculatus Oshoro5f female)
GAGGGAGGGGACGCGGGCGGGGTAGAGGGAACGGCAACGGCCGAGCAGCG
GGCGGCAAGCACGGCGGTGAACGTAAGGGCGCGGAGGAAGACAGCAGGAG
CGGCGGCGGCGGCGGGGACGATTCGTCGTCGACGTCGCGTGAAGAGGACG
CTGACGATCTGGACGACCTGCTGGACGACTTGGACGGCGATGACAGCGAC
GGCGCCGGTGGCGCGATGAGCGAAACCCGGAGTCGCCAGCGGACTTCGCA
GGGGAAACCCGTGCTGGGGCAAGCGCGTGAGGGAGACGAAGGCCGGGGGA
AAGGCGACGACAGCGAGAGCTCCGACGGCGATGAGTCCTCGGCGTCGTCG
AGCGGCTCGATCGCCGCCGCCGCCCTCGAGTTCGAGGCCTTCTTGGGCGA
TTTCGAAAGTGGTGGAACCGGTGGGAGCCGTAGAAGTGTTGGGGTTTCGG
GTGGTGGTGGTGGTGTTGGTGAATCGCGAAGAAACGCACCGACTCCAAAG
CCCACACAGAAGATGGCGGCCGCAACAATGGGTCGTGCAGACAGTCGCAG
CAGCAAGGGTAATACGCCTACGTCATCGCTGTTGAGTGGATCACTTCCCA
GACGCTCAGGAAAGCGAAAGCTTGGAGAGGTGCGCGGGGGGCCGGCAGCT
GGGGATAAGGTAGAGGGGGGCAAGAGGCAGCGCAGGTTGGCGGAAGCGAG
AGTTGCGGCGCAGGCTGGTCATCCGAGGAGCCTCTTCGCCGACGTGAACA
AGGCCGGTCGCGAAGGGAGAGGGAGAGGACGCGGGCGAGGCAGTGCTGTA
GGCAACGGCCGAGGAGCGAGGGGCAAGCACGGGGGTGAACGTAAGGGCGC
CGAAGCAGACAGCAGGAGCGGCGGCGGCGGCGGCGGCGGCAGCGGTTCGT
TGTCGACGTCGAGTAAGGGTGACGATGACGATCTGGACGTTATGCTGGAC
GACTTGGACGGCGATGGAGGAGACGAAGGCGTTGATCGCGGTGGCGGCGG
GCGGGGCAGACGTAGTTCCGGGGGTGACGGCAACACCAGCGAAAGCCCCA
GTCACCAGCGATCCTTGGGAGGAAAATCTGCCGCGCGTAGAGGCGCTACA
GGAGGCGAAGGCCGGAAGCAATCGGACGAAAGCGAGGGCTCCGACAGCGA
TAGTTCCTCCGCGTCGTCGAGTAGCTCGATCGCCGCCGCCGCCCTCGAGT
TTGAGGCGTTCTTGGGCGATCTCGAAAGCGGCGGCGGCAGCGGCACCAAC
GGAACCGGGGGTGGCAAGGGAAGTGCTGGCGGGTCAGATGGTATTGGTGG
ATCCTCCAAAACGGCGCCGACTTCGAAGCCTACTCGACAAGTAGCGGCAC
CGTCGGCGGGTAGTGCAGGCAGCAGCGGCAAGAAGAGGGGACTACCGTCG
TCGTCGCCATCTCGCGGATCAGGATCTCCGCCCGCCCGGTCAGTGAGGCA
AAAAACAGGAGAGACGGGCGCGGCGGCGACGGCTGAGGTGACAGTCTTGC
GGGCGCGAGAAAATGTAGGGCAGGAAGAGGAGAGAGCGGAGAGAACTGGC
CATGGTGTTGCGAGTGGTCGTGGCGAATACAAGAGCGCGGGCTCTGGCCT
GGGCCGGGACTTGGATGGCATGCTGCGGGAGGAAGAAGGGAAGGACGAGG
CAGGGGAGGAGGGTGACCTCGAGGCTAGAGTGGAGGGAGGGAGTGCCGTC
GTTGGGGATGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1243:23895..25607-

>mRNA_H-canaliculatus_F_contig1243.2067.1 ID=mRNA_H-canaliculatus_F_contig1243.2067.1|Name=mRNA_H-canaliculatus_F_contig1243.2067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2436bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:23895..25607- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGAAACCCGGAGTCGCCAGCGGACTTCGCAGGGGAAACCCGTGCT
GGGGCAAGCGCGTGAGGGAGACGAAGGCCGGGGGAAAGGCGACGACAGCG
AGAGCTCCGACGGCGATGAGTCCTCGGCGTCGTCGAGCGGCTCGATCGCC
GCCGCCGCCCTCGAGTTCGAGGCCTTCTTGGGCGATTTCGAAAGTGGTGG
AACCGGTGGGAGCCGTAGAAGTGTTGGGGTTTCGGGTGGTGGTGGTGGTG
TTGGTGAATCGCGAAGAAACGCACCGACTCCAAAGCCCACACAGAAGATG
GCGGCCGCAACAATGGGTCGTGCAGACAGTCGCAGCAGCAAGGGTAATAC
GCCTACGTCATCGCTGTTGAGTGGATCACTTCCCAGACGCTCAGGAAAGC
GAAAGCTTGGAGAGGTGCGCGGGGGGCCGGCAGCTGGGGATAAGGTAGAG
GGGGGCAAGAGGCAGCGCAGGTTGGCGGAAGCGAGAGTTGCGGCGCAGGC
TGGTCATCCGAGGAGCCTCTTCGCCGACGTGAACAAGGCCGGTCGCGAAG
GGAGAGGGAGAGGACGCGGGCGAGGCAGTGCTGTAGGCAACGGCCGAGGA
GCGAGGGGCAAGCACGGGGGTGAACGTAAGGGCGCCGAAGCAGACAGCAG
GAGCGGCGGCGGCGGCGGCGGCGGCAGCGGTTCGTTGTCGACGTCGAGTA
AGGGTGACGATGACGATCTGGACGTTATGCTGGACGACTTGGACGGCGAT
GGAGGAGACGAAGGCGTTGATCGCGGTGGCGGCGGGCGGGGCAGACGTAG
TTCCGGGGGTGACGGCAACACCAGCGAAAGCCCCAGTCACCAGCGATCCT
TGGGAGGAAAATCTGCCGCGCGTAGAGGCGCTACAGGAGGCGAAGGCCGG
AAGCAATCGGACGAAAGCGAGGGCTCCGACAGCGATAGTTCCTCCGCGTC
GTCGAGTAGCTCGATCGCCGCCGCCGCCCTCGAGTTTGAGGCGTTCTTGG
GCGATCTCGAAAGCGGCGGCGGCAGCGGCACCAACGGAACCGGGGGTGGC
AAGGGAAGTGCTGGCGGGTCAGATGGTATTGGTGGATCCTCCAAAACGGC
GCCGACTTCGAAGCCTACTCGACAAGTAGCGGCACCGTCGGCGGGTAATG
AGCGAAACCCGGAGTCGCCAGCGGACTTCGCAGGGGAAACCCGTGCTGGG
GCAAGCGCGTGAGGGAGACGAAGGCCGGGGGAAAGGCGACGACAGCGAGA
GCTCCGACGGCGATGAGTCCTCGGCGTCGTCGAGCGGCTCGATCGCCGCC
GCCGCCCTCGAGTTCGAGGCCTTCTTGGGCGATTTCGAAAGTGGTGGAAC
CGGTGGGAGCCGTAGAAGTGTTGGGGTTTCGGGTGGTGGTGGTGGTGTTG
GTGAATCGCGAAGAAACGCACCGACTCCAAAGCCCACACAGAAGATGGCG
GCCGCAACAATGGGTCGTGCAGACAGTCGCAGCAGCAAGGGTAATACGCC
TACGTCATCGCTGTTGAGTGGATCACTTCCCAGACGCTCAGGAAAGCGAA
AGCTTGGAGAGGTGCGCGGGGGGCCGGCAGCTGGGGATAAGGTAGAGGGG
GGCAAGAGGCAGCGCAGGTTGGCGGAAGCGAGAGTTGCGGCGCAGGCTGG
TCATCCGAGGAGCCTCTTCGCCGACGTGAACAAGGCCGGTCGCGAAGGGA
GAGGGAGAGGACGCGGGCGAGGCAGTGCTGTAGGCAACGGCCGAGGAGCG
AGGGGCAAGCACGGGGGTGAACGTAAGGGCGCCGAAGCAGACAGCAGGAG
CGGCGGCGGCGGCGGCGGCGGCAGCGGTTCGTTGTCGACGTCGAGTAAGG
GTGACGATGACGATCTGGACGTTATGCTGGACGACTTGGACGGCGATGGA
GGAGACGAAGGCGTTGATCGCGGTGGCGGCGGGCGGGGCAGACGTAGTTC
CGGGGGTGACGGCAACACCAGCGAAAGCCCCAGTCACCAGCGATCCTTGG
GAGGAAAATCTGCCGCGCGTAGAGGCGCTACAGGAGGCGAAGGCCGGAAG
CAATCGGACGAAAGCGAGGGCTCCGACAGCGATAGTTCCTCCGCGTCGTC
GAGTAGCTCGATCGCCGCCGCCGCCCTCGAGTTTGAGGCGTTCTTGGGCG
ATCTCGAAAGCGGCGGCGGCAGCGGCACCAACGGAACCGGGGGTGGCAAG
GGAAGTGCTGGCGGGTCAGATGGTATTGGTGGATCCTCCAAAACGGCGCC
GACTTCGAAGCCTACTCGACAAGTAGCGGCACCGTCGGCGGGTACGGCAA
GAAGAGGGGACTACCGTCGTCGTCGCCATCTCGCGGATCAGGATCTCCGC
CCGCCCGGTCAGTGACGGCAAGAAGAGGGGACTACCGTCGTCGTCGCCAT
CTCGCGGATCAGGATCTCCGCCCGCCCGGTCAGTGA
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