mRNA_H-canaliculatus_F_contig1242.2055.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1242.2055.1
Unique NamemRNA_H-canaliculatus_F_contig1242.2055.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1242.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1242contigH-canaliculatus_F_contig1242:14421..14972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size552
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1242.2055.1prot_H-canaliculatus_F_contig1242.2055.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1242 14578..14910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.1533318-UTR-H-canaliculatus_F_contig1242:14420..145771622928957.1533318-UTR-H-canaliculatus_F_contig1242:14420..14577Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 14421..14577 +
1696845629.280932-UTR-H-canaliculatus_F_contig1242:14420..145771696845629.280932-UTR-H-canaliculatus_F_contig1242:14420..14577Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 14421..14577 +
1622928957.242603-UTR-H-canaliculatus_F_contig1242:14910..149721622928957.242603-UTR-H-canaliculatus_F_contig1242:14910..14972Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 14911..14972 +
1696845629.3015513-UTR-H-canaliculatus_F_contig1242:14910..149721696845629.3015513-UTR-H-canaliculatus_F_contig1242:14910..14972Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 14911..14972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.229809-CDS-H-canaliculatus_F_contig1242:14577..149101622928957.229809-CDS-H-canaliculatus_F_contig1242:14577..14910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1242 14578..14910 +
1696845629.291849-CDS-H-canaliculatus_F_contig1242:14577..149101696845629.291849-CDS-H-canaliculatus_F_contig1242:14577..14910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1242 14578..14910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1242.2055.1

>prot_H-canaliculatus_F_contig1242.2055.1 ID=prot_H-canaliculatus_F_contig1242.2055.1|Name=mRNA_H-canaliculatus_F_contig1242.2055.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
MCIYFLGRRVSPGLDARRARLRGCGAELGTSAVAAALLWVVLLSVSSHRR
CRRRRYTKFDCGSGLLKKLLPRGGHFRPSYLFFQELKVEQRGRGERFVLP
RNEYSTTRKE*
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mRNA from alignment at H-canaliculatus_F_contig1242:14421..14972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1242.2055.1 ID=mRNA_H-canaliculatus_F_contig1242.2055.1|Name=mRNA_H-canaliculatus_F_contig1242.2055.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1242:14421..14972+ (Hapterophycus canaliculatus Oshoro5f female)
CCACGAAGGAATTGGACGCTTCGAAACAGAGTCTCGTGGAGCACCATTTG
TTTTGTGCTTCCGCCGAAAACGGCGAGAGCCGGGGAGGTCCTCCGGAGGG
CTTCATTCGTGGTTTGTTCAAGTGGCTGACCCCGATGAGCGAAGGTGGCG
TCCAGTAATGTGTATATATTTCCTGGGAAGACGCGTGTCTCCTGGCCTCG
ATGCACGACGTGCACGGTTACGTGGTTGTGGGGCTGAGCTTGGGACTTCG
GCCGTTGCTGCTGCTCTACTTTGGGTCGTCTTGTTGAGTGTCTCCTCACA
CCGCCGGTGCCGACGAAGGAGATACACCAAGTTCGACTGCGGGTCGGGCT
TGCTCAAGAAGCTCCTCCCGAGAGGCGGGCATTTCCGTCCCTCCTACCTG
TTTTTCCAAGAACTAAAAGTAGAACAACGCGGACGGGGCGAGCGTTTCGT
CCTTCCAAGAAATGAATACTCCACAACGCGAAAGGAATAAAAGCACCTTC
TTGAGACAGGACTCGGGAAGATTTCGCGTGCCGAATTTCTCGGGGTGGGG
GA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1242:14421..14972+

>mRNA_H-canaliculatus_F_contig1242.2055.1 ID=mRNA_H-canaliculatus_F_contig1242.2055.1|Name=mRNA_H-canaliculatus_F_contig1242.2055.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1242:14421..14972+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTATATATTTCCTGGGAAGACGCGTGTCTCCTGGCCTCGATGCACG
ACGTGCACGGTTACGTGGTTGTGGGGCTGAGCTTGGGACTTCGGCCGTTG
CTGCTGCTCTACTTTGGGTCGTCTTGTTGAGTGTCTCCTCACACCGCCGG
TGCCGACGAAGGAGATACACCAAGTTCGACTGCGGGTCGGGCTTGCTCAA
GAAGCTCCTCCCGAGAGGCGGGCATTTCCGTCCCTCCTACCTGTTTTTCC
AAGAACTAAAAGTAGAACAACGCGGACGGGGCGAGCGTTTCGTCCTTCCA
AGAAATGAATACTCCACAACGCGAAAGGAATAAATGTGTATATATTTCCT
GGGAAGACGCGTGTCTCCTGGCCTCGATGCACGACGTGCACGGTTACGTG
GTTGTGGGGCTGAGCTTGGGACTTCGGCCGTTGCTGCTGCTCTACTTTGG
GTCGTCTTGTTGAGTGTCTCCTCACACCGCCGGTGCCGACGAAGGAGATA
CACCAAGTTCGACTGCGGGTCGGGCTTGCTCAAGAAGCTCCTCCCGAGAG
GCGGGCATTTCCGTCCCTCCTACCTGTTTTTCCAAGAACTAAAAGTAGAA
CAACGCGGACGGGGCGAGCGTTTCGTCCTTCCAAGAAATGAATACTCCAC
AACGCGAAAGGAATAA
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