mRNA_H-canaliculatus_F_contig10180.205.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10180.205.1
Unique NamemRNA_H-canaliculatus_F_contig10180.205.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10180.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10180contigH-canaliculatus_F_contig10180:2269..2916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10180.205.1prot_H-canaliculatus_F_contig10180.205.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10180 2414..2770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.9559338-UTR-H-canaliculatus_F_contig10180:2268..24131622928646.9559338-UTR-H-canaliculatus_F_contig10180:2268..2413Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10180 2269..2413 +
1696845511.8549764-UTR-H-canaliculatus_F_contig10180:2268..24131696845511.8549764-UTR-H-canaliculatus_F_contig10180:2268..2413Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10180 2269..2413 +
1622928646.9776576-UTR-H-canaliculatus_F_contig10180:2770..29161622928646.9776576-UTR-H-canaliculatus_F_contig10180:2770..2916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10180 2771..2916 +
1696845511.8763623-UTR-H-canaliculatus_F_contig10180:2770..29161696845511.8763623-UTR-H-canaliculatus_F_contig10180:2770..2916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10180 2771..2916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.9678893-CDS-H-canaliculatus_F_contig10180:2413..27701622928646.9678893-CDS-H-canaliculatus_F_contig10180:2413..2770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10180 2414..2770 +
1696845511.865253-CDS-H-canaliculatus_F_contig10180:2413..27701696845511.865253-CDS-H-canaliculatus_F_contig10180:2413..2770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10180 2414..2770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10180.205.1

>prot_H-canaliculatus_F_contig10180.205.1 ID=prot_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MFSLETDDELEGNHSHLIHGRCPTAHNGSSRTHSRSSWSSRSIDPVLVQS
WVSTSGGRGGGRCKLLFLRMFFLLFLLRPPPRKIENHRNIEDSAAKPILA
ADDEERTKGTCAQQQMKT*
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mRNA from alignment at H-canaliculatus_F_contig10180:2269..2916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10180.205.1 ID=mRNA_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10180:2269..2916+ (Hapterophycus canaliculatus Oshoro5f female)
ATAACATTTGCGGTAAGTTACACACAAAATATCTCCTACTCATGCTTTTG
TCCCCATCAATGAACCCTCACTGTTTTGAACTCAACATAAGCCTCGGGGT
ACGCCTCACACGACGTACCTCAGGAGGTATTCTAACGGTGTTGTTATGTT
TTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACTCACACCTTATCC
ACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGGACCCACAGCAGG
AGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGTTCAGTCTTGGGT
TTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGCTTCTTTTCCTCC
GTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCCAGAAAGATCGAA
AATCACCGGAATATCGAAGATAGCGCAGCGAAACCCATACTCGCGGCTGA
CGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGCAGATGAAAACGT
GATCGACATCGATGCTTTGGAGAAGGTATGGAACTTGTGGGAAGGAATTA
TCGTTGACCAATAGCTCGGCGTTCACGACGAGTTCGTGCGCGGGAAACGG
ACCAATGTCAGCTCCCATGGGCGGGGAACGGTCGGCTACAAGGTCGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10180:2269..2916+

>mRNA_H-canaliculatus_F_contig10180.205.1 ID=mRNA_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10180:2269..2916+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACTCACACCT
TATCCACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGGACCCACA
GCAGGAGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGTTCAGTCT
TGGGTTTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGCTTCTTTT
CCTCCGTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCCAGAAAGA
TCGAAAATCACCGGAATATCGAAGATAGCGCAGCGAAACCCATACTCGCG
GCTGACGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGCAGATGAA
AACGTGAATGTTTTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACT
CACACCTTATCCACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGG
ACCCACAGCAGGAGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGT
TCAGTCTTGGGTTTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGC
TTCTTTTCCTCCGTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCC
AGAAAGATCGAAAATCACCGGAATATCGAAGATAGCGCAGCGAAACCCAT
ACTCGCGGCTGACGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGC
AGATGAAAACGTGA
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