mRNA_H-canaliculatus_F_contig12414.2049.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12414.2049.1
Unique NamemRNA_H-canaliculatus_F_contig12414.2049.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12414.2049.1 vs. uniprot
Match: D7FY12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY12_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.000e-32
Identity = 73/101 (72.28%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:  124 APTAVAVML--LPPPLPSLQLGCMYGYSLGPYLPAVLLCGIPLPFMSLISLSAAGILSVVFLLRALTPVLLERNVAVATPVMAGLGVLQVLFTLVIKIVFF 420
            AP AV ++L  +  P+P ++LGCMYGYSLGPYLPA+L+C +P+P+M+L++LSAAG LSVVFLLRALTPVLLERNVA+A+PVMAGLGVLQV+FTLVIK  FF
Sbjct:  149 APLAVWLVLNQMDLPVPLVKLGCMYGYSLGPYLPAILVCALPVPYMTLVALSAAGTLSVVFLLRALTPVLLERNVAMASPVMAGLGVLQVIFTLVIKFAFF 249
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BLAST of mRNA_H-canaliculatus_F_contig12414.2049.1 vs. uniprot
Match: W7TJY7_9STRA (Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJY7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.830e-8
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:  160 PLPSLQLGCMYGYSLGPYLPAVLLCGIPLPFMSLISLSAAGILSVVFLLRALTPVLLERNVAVATPVMAGLGVLQVLFTLVIKIVFF 420
            PLP +Q   +YGYSL  ++P  LL  IP P    +S  AA   SVVFLL+AL PV++E+    A P +A +G +Q+   L IK+VFF
Sbjct:  167 PLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFF 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12414.2049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY12_ECTSI1.000e-3272.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TJY7_9STRA4.830e-845.98Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12414contigH-canaliculatus_F_contig12414:894..3555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7FY12
Preferred nameYIPF1
KEGG koko:K00688,ko:K03155
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
GOsGO:0000138,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005802,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708,GO:0098791
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG3114@1,KOG3114@2759
EC2.4.1.1
COG Functional cat.S
CAZyGT35
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categorysignal anchor
Exons2
Model size1733
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12414.2049.1prot_H-canaliculatus_F_contig12414.2049.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12414 2204..3543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.787381-UTR-H-canaliculatus_F_contig12414:893..22031622928956.787381-UTR-H-canaliculatus_F_contig12414:893..2203Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12414 894..2203 -
1696845629.1290946-UTR-H-canaliculatus_F_contig12414:893..22031696845629.1290946-UTR-H-canaliculatus_F_contig12414:893..2203Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12414 894..2203 -
1622928956.844577-UTR-H-canaliculatus_F_contig12414:3543..35551622928956.844577-UTR-H-canaliculatus_F_contig12414:3543..3555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12414 3544..3555 -
1696845629.162444-UTR-H-canaliculatus_F_contig12414:3543..35551696845629.162444-UTR-H-canaliculatus_F_contig12414:3543..3555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12414 3544..3555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.8153517-CDS-H-canaliculatus_F_contig12414:2203..22521622928956.8153517-CDS-H-canaliculatus_F_contig12414:2203..2252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12414 2204..2252 -
1696845629.1424897-CDS-H-canaliculatus_F_contig12414:2203..22521696845629.1424897-CDS-H-canaliculatus_F_contig12414:2203..2252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12414 2204..2252 -
1622928956.830829-CDS-H-canaliculatus_F_contig12414:3181..35431622928956.830829-CDS-H-canaliculatus_F_contig12414:3181..3543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12414 3182..3543 -
1696845629.152271-CDS-H-canaliculatus_F_contig12414:3181..35431696845629.152271-CDS-H-canaliculatus_F_contig12414:3181..3543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12414 3182..3543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12414.2049.1

>prot_H-canaliculatus_F_contig12414.2049.1 ID=prot_H-canaliculatus_F_contig12414.2049.1|Name=mRNA_H-canaliculatus_F_contig12414.2049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
MIRQGARTILSTKTCGNPPCPFPSSSYLFPGVHVPPSAPTAVAVMLLPPP
LPSLQLGCMYGYSLGPYLPAVLLCGIPLPFMSLISLSAAGILSVVFLLRA
LTPVLLERNVAVATPVMAGLGVLQVLFTLVIKIVFF*
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mRNA from alignment at H-canaliculatus_F_contig12414:894..3555-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12414.2049.1 ID=mRNA_H-canaliculatus_F_contig12414.2049.1|Name=mRNA_H-canaliculatus_F_contig12414.2049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12414:894..3555- (Hapterophycus canaliculatus Oshoro5f female)
GGCTGTCAGGAGATGATAAGGCAAGGAGCACGCACTATCTTGTCGACTAA
AACCTGCGGTAACCCCCCTTGCCCTTTTCCGTCGTCCTCGTACCTTTTTC
CCGGTGTTCATGTTCCTCCTTCTGCTCCTACTGCTGTCGCTGTTATGCTG
TTGCCCCCGCCCTTGCCGTCCTTGCAGCTGGGGTGCATGTACGGGTACTC
GTTGGGGCCGTACCTACCGGCGGTTCTCCTCTGCGGGATCCCGCTTCCCT
TCATGTCCCTGATTTCTCTGTCGGCGGCGGGCATCCTGTCGGTCGTCTTC
CTGCTCCGGGCCCTGACCCCGGTGTTGCTGGAGAGGAACGTGGCGGTGGC
GACGCCGGTGATGGCCGGGTTGGGGTAAGCGTCGCTGCTGCCGCTTCGTC
GCCGTTGTTTTTGCGTTGGGTGTTACGATGCCGCGGCTTTCTGTTGGCGC
CTGTTCGTACCTCCCCCTCCCCCTCTTCTCCTTACCTCTTGTATCATTCC
CCCTGCCTCTCGTGTCGTCGGGGTGCTGGCCACCTTTGGCGCGAGGCCCG
TCCTCGGCGTTTGTCTGACAAGCTCCACAGGTCGCGTGTTGTTGTGTGCT
TCTCTCCACACATTTGCATCGCGCGTAGCTTTTGCAAATCGGGTCATGCG
TGCTGCCTCAGCTTTACTGCCGCTTGGGGTGGTTGTAGCGGCGCGGTCGA
CGGCTGAGACTTCGGGGCCGCTCCAACGATCACTTCTTGTTCGTACACGG
ATGTCATCCCGACGGTGTTCGATACACGTTCCACGTGCACGTTTTCGCAT
GTACACAAAAAGGCTTTTTCGTGTTTACACAAAGGCGTGTGCGTGATCCC
GTGGCCTCGGCGTTAGTGGCCGCGATGCGCGTGAAATGCGGCACGAAAGC
TCCAAACGCGGCAACCTTGCTGGTTTCCATCTTGCACGCCGGAGAATCTT
GCCGCAGAGGCCGGCGGCGTCGTCATCGCTGGCGATATTATCGCCGTTGT
GGCGTTTTGGATGTTCGATTTCACGCTTGCCGTATGCCCCTTTTCGTTCA
TGGCGCGGTTTCTCCAACATTACGCTCTCGATGACAAACGGTTGACGTGT
GCGTTATGAACGTAACGCTGACCAAAGCCTGGTGCGACCGTGGATCGCGC
TCACGAACAGGTACGACCACGGCCGCGGATTGTGTGTGCTTGCCTGCCCG
CCCTGACGCCCCCTTCTACCCCCCCCCTCCCCTCTTCTTCCGATTTTCCG
GCGTTTGATGCTTGGTCGGTCCATTTTTTCTCTCTCTCCCAAAATCGCGG
CAGGGTGCTCCAAGTGCTCTTTACCCTCGTGATCAAGATCGTCTTCTTCT
GAGAGATTCCTCGACAGCAGCAAAGTGACGACGACCGGGTGCGACACGAC
CAAGAATTTTCCTCCAACACCCCCCGCCCTTCTTACATCTGCTATTGCTT
GCGACGCGTTTCGAGGGGGAGGGGACGGCGGCATCAGCAAAGTGGAGTTG
CGATGGCGGTGGCACCGCGGGTAGAGTTCTTAAAAATTGCGTGGTCCGAG
CTGTTTTTGTACCTTATCCTGGCCTGGTGCATTTTGTCCTCGCATCGGCG
TCCGCTCGTCGTTTCCTTGTAACTTATCCCGGCGTCAGCAAGCACAGTAG
TTCGCGCGCGCGTTCCATAGGGTCGAATTCGCGGGACAAACACATGGAGA
ACGCCTCTTGGTTGCCCTCCCGCGGGGAAAATTGCGGTGGAAAGACGGGG
GCGACGTCTGTTTGCATTTCAAGCGCCCCAGGGAGAGCAGGGGGTACACA
CACCTGCAGTCAGCCGGTGTGCCTTGACAGCCGGTCGAATCTTGGCCGTG
CAGACCCAACACACACACATGCATACATATATTTACGTACACAAAGAGAT
CGATCGATCGCCTCGTGTCCAGACAAGCGACGCTTTTCGTCGATGTGCTC
GGGGAATGATTGCTTGTCCGGCACCCGTTGTGCGGGACGCATGGAAGGAC
GGTAGAGGTCGACTGGCGGGGAGTGGCTCGGTATACGCAGGCTACTTGCA
CTTGTCTTTCTCACGAGCCACGAGACGCCCTGGGATCAAGTGGGACGTCG
GGACGCTGCTTCGTATTTCTCTGGAAAGAGAACTAGCTGCCGATTTATGG
TCTTGGGGGCGCATTTAATCTCTTCCCCCCCCCCTCCTTAAACTAGAGTG
CGACGGTGCATGTTGGTGCGGTCATCATCGCGGAAAAACAAGAGTCGAAC
CTCTGACGAAGAGCGCCCATCGGATTCAAAGTTAGTGGTGCCGTTGCCGG
CGATATTGCTGTTCGAGTTCACCATGGGCCATTCAATGCATGGTCCATTT
TGCTCCTCCGCGTGCGGCTGCTAGAAGGTTGGTTCCGGTTGATGAATCGA
CGAATGACCGGCGTCTCGCATCTTCAATTCCCACGCCCTATGTAAGCCTC
CCGGTCGACCTGAGCGCGGGGCAGGCCCCACACCGTGCGGTCGCGCGTGC
GTGCACATGCTGCGAGAGGCGCAAATCATCGCGTCTTGCTGGATCGACCG
CTACTTGCGGAATTAAATAGCCAGATTGTTACACTTGCAGGCCTGAGCTC
GGGATCTCCGGCTGGGGACGAGACGCCGTAGTGGCGGTGGTGGGTCTTGC
GTTGGTCAGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12414:894..3555-

>mRNA_H-canaliculatus_F_contig12414.2049.1 ID=mRNA_H-canaliculatus_F_contig12414.2049.1|Name=mRNA_H-canaliculatus_F_contig12414.2049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12414:894..3555- (Hapterophycus canaliculatus Oshoro5f female)
ATGATAAGGCAAGGAGCACGCACTATCTTGTCGACTAAAACCTGCGGTAA
CCCCCCTTGCCCTTTTCCGTCGTCCTCGTACCTTTTTCCCGGTGTTCATG
TTCCTCCTTCTGCTCCTACTGCTGTCGCTGTTATGCTGTTGCCCCCGCCC
TTGCCGTCCTTGCAGCTGGGGTGCATGTACGGGTACTCGTTGGGGCCGTA
CCTACCGGCGGTTCTCCTCTGCGGGATCCCGCTTCCCTTCATGTCCCTGA
TTTCTCTGTCGGCGGCGGGCATCCTGTCGGTCGTCTTCCTGCTCCGGGCC
CTGACCCCGGTGTTGCTGGAGAGGAACGTGGCGGTGGCGACGCCGGTGAT
GGCCGGGTTGGGATGATAAGGCAAGGAGCACGCACTATCTTGTCGACTAA
AACCTGCGGTAACCCCCCTTGCCCTTTTCCGTCGTCCTCGTACCTTTTTC
CCGGTGTTCATGTTCCTCCTTCTGCTCCTACTGCTGTCGCTGTTATGCTG
TTGCCCCCGCCCTTGCCGTCCTTGCAGCTGGGGTGCATGTACGGGTACTC
GTTGGGGCCGTACCTACCGGCGGTTCTCCTCTGCGGGATCCCGCTTCCCT
TCATGTCCCTGATTTCTCTGTCGGCGGCGGGCATCCTGTCGGTCGTCTTC
CTGCTCCGGGCCCTGACCCCGGTGTTGCTGGAGAGGAACGTGGCGGTGGC
GACGCCGGTGATGGCCGGGTTGGGGGTGCTCCAAGTGCTCTTTACCCTCG
TGATCAAGATCGTCTTCTTCTGAGGTGCTCCAAGTGCTCTTTACCCTCGT
GATCAAGATCGTCTTCTTCTGA
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