mRNA_H-canaliculatus_F_contig1241.2047.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1241.2047.1
Unique NamemRNA_H-canaliculatus_F_contig1241.2047.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 5.540e-149
Identity = 214/256 (83.59%), Postives = 230/256 (89.84%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEE-GYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMSMSYSF 865
            M RTGFVALAC MLGAANALEV+TPSADL+VVADRTYTVEWTGADSGRFEIDLY+CGSMCMEDSCGDWVTALCPYGE+GCPDNEGDYDIVMPEPM+G   SGYKVRVMDV DE  MDCSD+F L+ S+DAP AG E GY+L VTSP+ GD AEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA+GDGDCGT+VT+ICDKPSIGCKDSMGDYDVEIP DT +G+Y IRVGRFEDE LY CSG FT+MG D  SMSY F
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 6.560e-126
Identity = 195/267 (73.03%), Postives = 215/267 (80.52%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADS-GRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEE-GYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVM-GDDS---------MSMSYSF 865
            M RTGFVALACGMLGAANAL+V TPS  L V+ADRTYTVEWTG  S  RFEIDLYYCGSMCMED CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM G  GSGYKVRV D+ DE + DCSD F LL S +AP  G+E G  L VTSP++GD+A    EYTVEFDYDNGVGS VDRF+IDLY A+G+GDCGT+V +ICDKP+IGCKDSMGDYDVEIP DT +GEY IRV RFED++LYSCSG FT+  GDDS          S+SY F
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 2.940e-124
Identity = 187/257 (72.76%), Postives = 209/257 (81.32%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSG-RFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGY-YLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMSMSYSF 865
            MVRTGFVALACGMLG A+ALEV+TP+A  +VV+ R YTVEW+G  S  RFEIDLYYC SMCMED CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM+G  GSGYKVRV DV DE   DCSD F L+   DAP A + G  Y+ VTSPSTGD AEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGTF+ T+CDKP+IGCKDSMGDYDVEIPED  +G Y+IRVG FEDE++Y CS  F ++G D  SMSY F
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 4.900e-113
Identity = 172/253 (67.98%), Postives = 199/253 (78.66%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMSMSY 859
            M RT F ALA GMLGAANALEV++P+A  +VVAD  YTVEWTGA SGR++IDLYYCGS+CMED CGDWVTALCPYG+DGCPD +GDYD+VMPEPM G   SGYKV V D  DE +  CS  F L+ S +AP A + G Y+ VTSPS GD A AG EYTVEFDYDNG+GS V+RF+IDLY + G GDCGT+VTTICDKPSIGCKDS GDYDV IP  T SG YSIRVG FED+ +Y CS  F ++G +SMS+ +
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSVRF 252          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 7.390e-113
Identity = 169/255 (66.27%), Postives = 196/255 (76.86%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMSMSYSF 865
            M RT F A+A GML AANALEV++P   + V+ADR YTVEWTG  +GRFEIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM+G   SGYKV V +  DE +M CSD F L+ S+DAP AGE GY L VTSPS GD A AGE YTVE+DY+NG GS  DRF++DLY+  G GDCGT+VTT+CD+PSIGC DS GDYDVEIP DTP+G YSIRVG F+DE +Y CS  F V   D M++S  F
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 3.040e-112
Identity = 170/237 (71.73%), Postives = 194/237 (81.86%), Query Frame = 2
Query:  137 MLGAANALEVITPSADLVVVADRTYTVEWTGADSG-RFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGY-YLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDD 841
            MLGAA+ALEV+TP+   +VVA R YTVEWTG  S  R+EIDLYYCGSMCMED CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM+G  GSGYKVRV DV D+   DCSD F L+   +AP AG+ G  Y+ VTSPS+GD AEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGTF+ T+CDKP+IGCKDSMGDYDVEIPED  +G Y+IRVG FED+++Y CS  F ++G D
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGAD 237          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 1.360e-109
Identity = 171/253 (67.59%), Postives = 192/253 (75.89%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYM-AEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDS-MSM 853
            M RT F ALA GMLGAANALEV++P+A + V+ADRTYTVEWTG    RFEIDLYYCGS CMED CGDWVTALCPYG DGCPD +GDYDIVMPEPM G   SGYKV V D  DE  M CS  F L+ S DAP AGE GY L VTSPS GD A AG  YTVE+DY+NG+GS  DRF+IDLY    G GDCGT+V T+CDKPSIGC DS GDYDVEIP DTP+G YS+RVG F D+ ++ CS  F ++ D + MSM
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 4.650e-102
Identity = 164/235 (69.79%), Postives = 186/235 (79.15%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADS-GRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEE-GYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDS----MGDYDVEIPEDTPSGEYSIRVGRF 787
            M RTGFVALACGMLGAANAL+V TPS  L V+ADRTYTVEWTG  S  RFEIDLYYCGSMCMED CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM+G  GSGYKVRV D+ DE + DCSD F L+ S +AP  G+E G  L VTSP++GD+A    EYTVEFDYDNGVGS+VDRF+IDLY A+GDGDCGT+V +ICDKP+IGCKDS     G + V+       G +S+ V R+
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 8.230e-89
Identity = 150/255 (58.82%), Postives = 172/255 (67.45%), Query Frame = 2
Query:  101 MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFEIDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMSMSYSF 865
            M RT F ALA GMLGA NALEV +P+A  ++VA  + TVEWTG  SGRF+IDLYYCGS+CMED CGDWVTALCPYG+DGCPD +GDYD+VMPEPM G   SGYKV V D  DE +M CS  F L+ S                                 FD+DNG GS V+RFSIDLYM+ G GDCGT+VT+ICDK SIGCKDS GDYDV IP DT SG YSIRVG FED  ++ CS  F ++G +S SMS  F
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGES-SMSVRF 253          
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.500e-79
Identity = 132/189 (69.84%), Postives = 149/189 (78.84%), Query Frame = 2
Query:  281 MEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEGSGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAG-EEGYYLMVTSPSTGDVAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDS 844
            +ED CG+WVTALCPYG +GCPDNEGDYDIVMPEPM+G  GSGYKVRV DV    + DCSD F L+ S +AP+ G  +  YLMVTSPS GD A+AG EYTVEFDYDNGVGS+VDRF IDLY   G GDCGT+V  +CDK +IGCKDSMGDYDVEIPE    G YSIRVGRFED+ALY CSG F ++G  S
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1241.2047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FYL2_ECTSI5.540e-14983.59EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JRG9_9PHAE6.560e-12673.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE2.940e-12472.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3E8_ECTSI4.900e-11367.98Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE7.390e-11366.27GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D8LI46_ECTSI3.040e-11271.73EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3F0_ECTSI1.360e-10967.59EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI4.650e-10269.79Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KP11_9PHAE8.230e-8958.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE2.500e-7969.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1241contigH-canaliculatus_F_contig1241:13646..17587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_002660.1
Exons5
Model size2497
Cds size768
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.3923004-UTR-H-canaliculatus_F_contig1241:13645..152741622928956.3923004-UTR-H-canaliculatus_F_contig1241:13645..15274Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1241 13646..15274 -
1696845628.9553869-UTR-H-canaliculatus_F_contig1241:13645..152741696845628.9553869-UTR-H-canaliculatus_F_contig1241:13645..15274Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1241 13646..15274 -
1622928956.494764-UTR-H-canaliculatus_F_contig1241:17487..175871622928956.494764-UTR-H-canaliculatus_F_contig1241:17487..17587Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1241 17488..17587 -
1696845629.0080924-UTR-H-canaliculatus_F_contig1241:17487..175871696845629.0080924-UTR-H-canaliculatus_F_contig1241:17487..17587Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1241 17488..17587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.4137878-CDS-H-canaliculatus_F_contig1241:15274..154261622928956.4137878-CDS-H-canaliculatus_F_contig1241:15274..15426Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 15275..15426 -
1696845628.963169-CDS-H-canaliculatus_F_contig1241:15274..154261696845628.963169-CDS-H-canaliculatus_F_contig1241:15274..15426Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 15275..15426 -
1622928956.4332757-CDS-H-canaliculatus_F_contig1241:15677..158131622928956.4332757-CDS-H-canaliculatus_F_contig1241:15677..15813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 15678..15813 -
1696845628.9715369-CDS-H-canaliculatus_F_contig1241:15677..158131696845628.9715369-CDS-H-canaliculatus_F_contig1241:15677..15813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 15678..15813 -
1622928956.450127-CDS-H-canaliculatus_F_contig1241:16073..163671622928956.450127-CDS-H-canaliculatus_F_contig1241:16073..16367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 16074..16367 -
1696845628.9796834-CDS-H-canaliculatus_F_contig1241:16073..163671696845628.9796834-CDS-H-canaliculatus_F_contig1241:16073..16367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 16074..16367 -
1622928956.4680722-CDS-H-canaliculatus_F_contig1241:16971..170531622928956.4680722-CDS-H-canaliculatus_F_contig1241:16971..17053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 16972..17053 -
1696845628.9881585-CDS-H-canaliculatus_F_contig1241:16971..170531696845628.9881585-CDS-H-canaliculatus_F_contig1241:16971..17053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 16972..17053 -
1622928956.4805067-CDS-H-canaliculatus_F_contig1241:17383..174871622928956.4805067-CDS-H-canaliculatus_F_contig1241:17383..17487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 17384..17487 -
1696845628.9974928-CDS-H-canaliculatus_F_contig1241:17383..174871696845628.9974928-CDS-H-canaliculatus_F_contig1241:17383..17487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1241 17384..17487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1241.2047.1prot_H-canaliculatus_F_contig1241.2047.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1241 15275..17487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1241.2047.1

>prot_H-canaliculatus_F_contig1241.2047.1 ID=prot_H-canaliculatus_F_contig1241.2047.1|Name=mRNA_H-canaliculatus_F_contig1241.2047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
MVRTGFVALACGMLGAANALEVITPSADLVVVADRTYTVEWTGADSGRFE
IDLYYCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMTGMEG
SGYKVRVMDVGDEGEMDCSDSFMLLPSDDAPMAGEEGYYLMVTSPSTGDV
AEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAEGDGDCGTFVTTICDKPSI
GCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYSCSGVFTVMGDDSMS
MSYSF*
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mRNA from alignment at H-canaliculatus_F_contig1241:13646..17587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1241.2047.1 ID=mRNA_H-canaliculatus_F_contig1241.2047.1|Name=mRNA_H-canaliculatus_F_contig1241.2047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1241:13646..17587- (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCTCAACCACCACCCTCCCCCGCCTCAACGTAACGCAAGACAAACC TCTCGCCGCACCCCTCCGCAGCTTATCCCCATCACACCCTTCAGTACAAG ATGGTTCGCACTGGTTTCGTCGCCCTGGCCTGCGGCATGCTCGGCGCCGC CAACGCGCTCGAAGTGATCACTCCGTCTGCTGACCTTGTCGTCGTGGCCG ACCGGTGAGAGAGCCTGGCACCGTTTGCTCCCCGCCATCGTTTGCTCCCC CGCTTGAAGTGACTCGGACCTTGTTGCCATAAGGTGGATGGCTTGCGTGC GTTCGGTATGAACCGTGCGCCACGATACCACGGGTTGGCGAAGAGAAGCC ACCGCGATTGACGGAAGAACGTGTTATCGCCGATGTGGGCCTCTTCCTCT TTCGATAGTTTTGTCGTCGCTCCCGGTGAACATCTGGTCTCAACCCTTTC ACATCCAGATGTTCCCCAGATTTTCCATCAACACTCCTCTCCCGATCATC GTCTCTTCCTTTATCGTGCGCGAACCTCGTTCAGAACCTACACGGTGGAG TGGACCGGAGCGGACTCCGGCCGGTTCGAGATCGACCTCTACTACTGCGG CTCTATGTGCATGGAGGTGAGACACCATGGCGGGGAGGATGTTGTTGTTA CTTTCGAAGTCTTCTCCCGCCACGTCGCCAGACCTCTCCAGAGTGTAGGG ATGGAACGCGAGAAGTCCTGTGTCCCGAAACTCTGGAGAGGGGAGGGATG ATGGCATGAAAGGCGTTGCCGTCATAGATCCGAGAGGCGTTGCCGTCATA GATCCGAGACGTAAACCCCTCTCTGTGTGGCATGAACGAGAATCTCAGAT CGAAGCACGACGTAAGATCCATCTGCCTCGCGGAAAAGTGACGCTGAAAA AAATAATACACTCGGCTGTAATACCGGAGCACGCCCCTCTGACGGAGATG ACTTTGACACATCGGCTCCTCGTTGAGCCACACTGGAAAAGGCCAAGGGG CTATTCCTTATCACCAAGTATGTTTCTTATCTGGCTGACGCGACGTGAGG GAAGCTAGAGGAGCTCTAACGCAGCGGGAAACCCCTCCCAGGTTGACCAG CATTTTGATCCCTGTTTCAAGTCCGAGTGAAAACGAGATACCTCTGGTCA CGTTCTCAAAAAGACTGACTTCAACACTTGCATTCGAACAATTTCGGTGT GGATTCCCGAAACTCCATAGGACTCCTGCGGAGACTGGGTGACCGCCCTG TGCCCGTACGGCGAGGACGGCTGCCCTGACAACGAAGGTGACTACGACAT CGTCATGCCCGAACCCATGACTGGCATGGAGGGTTCCGGCTACAAGGTGC GCGTGATGGACGTGGGAGACGAGGGAGAGATGGACTGCTCGGACTCCTTC ATGCTGCTTCCGTCTGATGACGCGCCGATGGCTGGCGAGGAGGGCTACTA CCTGATGGTTACCTCCCCGTCCACTGGGGACGTCGCCGAGGCGGGCGAAG AATACACGGTTGAGGTGAGATTTGCGCGAGTCAGGCGGCATGTAGGAGGA AAGCACGGAATTGTGACGTCATTTCGCCTCCCCGTGTAGGTTCTGACGAA AATCGACTTCCCCGTGTGGAGCACACACGTTACGTGAAGGATGCGAGAGC CGTGCTGAAAGTGCGAATGTGCTCCTCTTTTTTCCCATTTCGCGTACGAC GTGTCCCGAAATGAGGACTTGCGACCTGAAATGAAGTTCATTCTGTCTCG TTCTTTTCTGTGTACCCCACTCAGTTCGACTACGACAACGGTGTAGGCTC CAAGGTGGACCGATTCTCGATCGACCTTTACATGGCGGAGGGAGATGGCG ACTGTGGTACGTTCGTGACCACCATCTGCGACAAGCCGTCCATCGGATGC AAGGACTCCAGTGAGTAACCCACTTTGCCTTACATCTACAGCCTTGACGT TTTTGGGCGAAGTGATCAGAGGCGTTCACATTGTGAATGAAAGTTGAAGG AGTGTGAATCTCCTCGCTCCAGCTCTGACTCTGCAACCACATCGACGCCT GGCGATTTTGTTTCGCTGCTGATTTTACGATTTGTTTCCGGTGGCCACTC TTAACAGCGAGAAAATTCAACAAACCTTTCTTCTCCATGTCTCTCGCTCT TATAATCGCAGTGGGGGACTACGACGTGGAAATCCCGGAGGACACCCCAT CCGGCGAGTACTCGATCCGAGTCGGCCGTTTCGAGGACGAGGCCCTCTAC AGCTGCTCGGGCGTCTTCACCGTCATGGGCGACGACTCCATGAGCATGTC GTACTCGTTCTAAGAATTCGAAGCTGAATCATCCACGACCTAGTAGTAGC AATATCTTTAAACATCCAGTATCTGAAGAGGAGTGCGTTGTCGCCGCGTT TCACAGCGCACGATTTGCTAGCATGTGACGTTTTCAGCCAAGGTAATTTT TTTCTTGGTGGGGTTGACCATCTGGCCGTATTCCCATCGCCCACTCAAAC CTTGGTTCCAGACCGGAATATCACGGAGTGAAAGTGCCTGTCTCTCGCGT TCAGTTCAGCGTTTCCGAGGAAGAAGGATGGTAATGAAGTTTGCTACATT CGTGGCGAACGTTACTTGGCCACTGACTGTGGACGATCTGGTGGATTCTG ACATCCTGCCCCTGTTTTTTGAGTGAGCAAAGGTAGATATGGTACCAGGC GCCGTTGAGCAGCGTATCGCTCCTTCTCCCGAGCTTCGTCGGGTTTCCCT CGAGAAGTCTCGAGGCGTGTACTCTTGAGCAGTTCTCTTTTCGCTTTGTG AGTTAGGACGTTGTCCTTGCACGTTAATCCCCTATGTTGTACATTAGAAC TGCAGTGTACCTTGGTTTGCCTGCTGTTTGTCGCGGTTGCAAGTCCTTAG CTATTTTGTTCTGGGTTGCTTTTTTCGGGCTCCTGGTGTGTACGGGTATT TGGTACTTTTAAGATCGCGTCGCGCCACAAACATGTTTTACAGGCAGCGC ACGAGCTTCATTTTTGTTGGTAATTTTTGTTATTGCTCCCTCCCCCTCCC TTTGTGAGGATGGTGCGCGTGGCAATAAATGTTTCGTCTGTGTTGAAGCG GTAGACCACTTCCGTGGGCAATCTCACGACGTTGCTGTGCTGGGCCTGGG TCGGCGTTGTGCAGGAGATCGTCGAACTGGGTCATGCACGAAGCATTCAT CTTTCGGATTGTGACCATCGTTGTCTGGGATTCAGTGTACAAATCTCCGC GACATAAAATAGTGTTGCCATCTGTTTTTGGGTATCCCAATGTCGATGCC GTCGATAGGTTGCATATAAAGGTTTGTTTTGACTCCTGGCGCATCTCTGC GTAGGCACGCAACCCCCTCCCGTTTTTGAGAGGGCTTCTTTGAACACTCG AAACACTTATGCTCCCAATAACCTTCATCAAAAAATTGTGAGGCGTTTCT GTGCGGAAGGAAATAAACGACGTTTTCCTTTTCCGCAGCCCAGGGTTCGT CCCGAAAAGCGTGGTCATAATGGTTGGAAATCTTCCTTGGACTGTGATGG AGGTCGGGCGACGGGAAGCAGCGTTCTCTTCAGGTGTTGAGCTGTTGCGG GTTTGGAACAAATTGCAGGGTTTGCTGGAAAGCTGAACACCTGACCCGCA ACGTTTTCAATGTCCCCGCAACTGCGCTTGCCGCACACGAAGAAGTGCGC GGGATTCGGGTTCTAAGCCGTCGAAAAAAACAATTGGCTCTTTTCCGACT ATTTTGGGCATTTTCGGCATTTTCCGTTCATCTGGGTGATTTTGGGTACA AAATGATGGAAACATCCAACATTTTGCCTCCGGCTGTCCACGCGGGAGTC CTCCGGGGAGGGTCGTGATCAGGGAGCCGAATCACCGGAAGATATGCCCG GCACGTGTTGCGCCAGATTGACCATTCCGAAACAAACCCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1241:13646..17587-

>mRNA_H-canaliculatus_F_contig1241.2047.1 ID=mRNA_H-canaliculatus_F_contig1241.2047.1|Name=mRNA_H-canaliculatus_F_contig1241.2047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1241:13646..17587- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTCGCACTGGTTTCGTCGCCCTGGCCTGCGGCATGCTCGGCGCCGC
CAACGCGCTCGAAGTGATCACTCCGTCTGCTGACCTTGTCGTCGTGGCCG
ACCGATGGTTCGCACTGGTTTCGTCGCCCTGGCCTGCGGCATGCTCGGCG
CCGCCAACGCGCTCGAAGTGATCACTCCGTCTGCTGACCTTGTCGTCGTG
GCCGACCGAACCTACACGGTGGAGTGGACCGGAGCGGACTCCGGCCGGTT
CGAGATCGACCTCTACTACTGCGGCTCTATGTGCATGGAGAACCTACACG
GTGGAGTGGACCGGAGCGGACTCCGGCCGGTTCGAGATCGACCTCTACTA
CTGCGGCTCTATGTGCATGGAGGACTCCTGCGGAGACTGGGTGACCGCCC
TGTGCCCGTACGGCGAGGACGGCTGCCCTGACAACGAAGGTGACTACGAC
ATCGTCATGCCCGAACCCATGACTGGCATGGAGGGTTCCGGCTACAAGGT
GCGCGTGATGGACGTGGGAGACGAGGGAGAGATGGACTGCTCGGACTCCT
TCATGCTGCTTCCGTCTGATGACGCGCCGATGGCTGGCGAGGAGGGCTAC
TACCTGATGGTTACCTCCCCGTCCACTGGGGACGTCGCCGAGGCGGGCGA
AGAATACACGGTTGAGGACTCCTGCGGAGACTGGGTGACCGCCCTGTGCC
CGTACGGCGAGGACGGCTGCCCTGACAACGAAGGTGACTACGACATCGTC
ATGCCCGAACCCATGACTGGCATGGAGGGTTCCGGCTACAAGGTGCGCGT
GATGGACGTGGGAGACGAGGGAGAGATGGACTGCTCGGACTCCTTCATGC
TGCTTCCGTCTGATGACGCGCCGATGGCTGGCGAGGAGGGCTACTACCTG
ATGGTTACCTCCCCGTCCACTGGGGACGTCGCCGAGGCGGGCGAAGAATA
CACGGTTGAGTTCGACTACGACAACGGTGTAGGCTCCAAGGTGGACCGAT
TCTCGATCGACCTTTACATGGCGGAGGGAGATGGCGACTGTGGTACGTTC
GTGACCACCATCTGCGACAAGCCGTCCATCGGATGCAAGGACTCCATTCG
ACTACGACAACGGTGTAGGCTCCAAGGTGGACCGATTCTCGATCGACCTT
TACATGGCGGAGGGAGATGGCGACTGTGGTACGTTCGTGACCACCATCTG
CGACAAGCCGTCCATCGGATGCAAGGACTCCATGGGGGACTACGACGTGG
AAATCCCGGAGGACACCCCATCCGGCGAGTACTCGATCCGAGTCGGCCGT
TTCGAGGACGAGGCCCTCTACAGCTGCTCGGGCGTCTTCACCGTCATGGG
CGACGACTCCATGAGCATGTCGTACTCGTTCTAATGGGGGACTACGACGT
GGAAATCCCGGAGGACACCCCATCCGGCGAGTACTCGATCCGAGTCGGCC
GTTTCGAGGACGAGGCCCTCTACAGCTGCTCGGGCGTCTTCACCGTCATG
GGCGACGACTCCATGAGCATGTCGTACTCGTTCTAA
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