mRNA_H-canaliculatus_F_contig12408.2045.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12408.2045.1
Unique NamemRNA_H-canaliculatus_F_contig12408.2045.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12408.2045.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  495 CVELGPNPNAPVLVCVGTSDGSLLVQ 572
            CVELGPNPNAPVLVCVGTSDGSLLVQ
Sbjct: 2604 CVELGPNPNAPVLVCVGTSDGSLLVQ 2629
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12408.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE1.630e-6100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12408contigH-canaliculatus_F_contig12408:2025..2597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.1616495-UTR-H-canaliculatus_F_contig12408:2024..22281622928956.1616495-UTR-H-canaliculatus_F_contig12408:2024..2228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12408 2025..2228 +
1696845628.8566658-UTR-H-canaliculatus_F_contig12408:2024..22281696845628.8566658-UTR-H-canaliculatus_F_contig12408:2024..2228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12408 2025..2228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.1804004-CDS-H-canaliculatus_F_contig12408:2228..25971622928956.1804004-CDS-H-canaliculatus_F_contig12408:2228..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12408 2229..2597 +
1696845628.8655207-CDS-H-canaliculatus_F_contig12408:2228..25971696845628.8655207-CDS-H-canaliculatus_F_contig12408:2228..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12408 2229..2597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12408.2045.1prot_H-canaliculatus_F_contig12408.2045.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12408 2229..2597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12408.2045.1

>prot_H-canaliculatus_F_contig12408.2045.1 ID=prot_H-canaliculatus_F_contig12408.2045.1|Name=mRNA_H-canaliculatus_F_contig12408.2045.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MHDCDCSRTCLITAPYTREQGGRRRSGSCRRTCSRARSSEGGEHARPCVG
RPKEKHKTNQINRTISSTPWAPFPSANKATRGLISIVVTKSRLSPPTWTS
SDPSEVPTHTSTGAFGLGPSSTH
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mRNA from alignment at H-canaliculatus_F_contig12408:2025..2597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12408.2045.1 ID=mRNA_H-canaliculatus_F_contig12408.2045.1|Name=mRNA_H-canaliculatus_F_contig12408.2045.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=573bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12408:2025..2597+ (Hapterophycus canaliculatus Oshoro5f female)
GCCACGATAAGGTTGTTTCGGAGCCACTCCTCCGCATCTGGCAGAGCCTG
CTCCCGCAAGATGGTGAAGGAGAGAGCGTGAAACAGGGGGCAAATTTGTA
GACGGCGCGACCGCGGTTCTAGAGCCTTGTGCGTGATGGTAAAAACGCCG
CAGAAGGTTAGTCGACTTGTCTACTATTCTCCTATATTTAGCGTGTCTGC
ATGAATGCACGACTGTGATTGTAGTCGTACATGCCTCATCACGGCCCCGT
ACACGAGAGAGCAGGGGGGGCGGAGAAGAAGTGGCAGTTGCCGCCGAACT
TGCAGTCGTGCACGATCGTCCGAGGGAGGAGAACATGCAAGACCTTGCGT
GGGACGACCCAAGGAAAAACACAAAACCAATCAGATCAACCGAACTATCA
GCTCCACCCCGTGGGCACCCTTCCCCTCGGCAAACAAAGCAACGAGAGGC
TTAATCTCAATCGTGGTGACGAAATCACGCCTTTCTCCGCCTACCTGGAC
TAGCAGCGACCCGTCCGAGGTTCCGACGCACACCAGCACCGGCGCGTTCG
GGTTAGGCCCCAGCTCGACACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12408:2025..2597+

>mRNA_H-canaliculatus_F_contig12408.2045.1 ID=mRNA_H-canaliculatus_F_contig12408.2045.1|Name=mRNA_H-canaliculatus_F_contig12408.2045.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12408:2025..2597+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACGACTGTGATTGTAGTCGTACATGCCTCATCACGGCCCCGTACAC
GAGAGAGCAGGGGGGGCGGAGAAGAAGTGGCAGTTGCCGCCGAACTTGCA
GTCGTGCACGATCGTCCGAGGGAGGAGAACATGCAAGACCTTGCGTGGGA
CGACCCAAGGAAAAACACAAAACCAATCAGATCAACCGAACTATCAGCTC
CACCCCGTGGGCACCCTTCCCCTCGGCAAACAAAGCAACGAGAGGCTTAA
TCTCAATCGTGGTGACGAAATCACGCCTTTCTCCGCCTACCTGGACTAGC
AGCGACCCGTCCGAGGTTCCGACGCACACCAGCACCGGCGCGTTCGGGTT
AGGCCCCAGCTCGACACACATGCACGACTGTGATTGTAGTCGTACATGCC
TCATCACGGCCCCGTACACGAGAGAGCAGGGGGGGCGGAGAAGAAGTGGC
AGTTGCCGCCGAACTTGCAGTCGTGCACGATCGTCCGAGGGAGGAGAACA
TGCAAGACCTTGCGTGGGACGACCCAAGGAAAAACACAAAACCAATCAGA
TCAACCGAACTATCAGCTCCACCCCGTGGGCACCCTTCCCCTCGGCAAAC
AAAGCAACGAGAGGCTTAATCTCAATCGTGGTGACGAAATCACGCCTTTC
TCCGCCTACCTGGACTAGCAGCGACCCGTCCGAGGTTCCGACGCACACCA
GCACCGGCGCGTTCGGGTTAGGCCCCAGCTCGACACAC
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