mRNA_H-canaliculatus_F_contig12391.2031.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12391.2031.1
Unique NamemRNA_H-canaliculatus_F_contig12391.2031.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12391.2031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12391contigH-canaliculatus_F_contig12391:290..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size384
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.88464-CDS-H-canaliculatus_F_contig12391:289..6701622928953.88464-CDS-H-canaliculatus_F_contig12391:289..670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12391 290..670 +
1696845627.9795597-CDS-H-canaliculatus_F_contig12391:289..6701696845627.9795597-CDS-H-canaliculatus_F_contig12391:289..670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12391 290..670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.9022646-UTR-H-canaliculatus_F_contig12391:670..6711622928953.9022646-UTR-H-canaliculatus_F_contig12391:670..671Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12391 671..671 +
1696845627.9957676-UTR-H-canaliculatus_F_contig12391:670..6711696845627.9957676-UTR-H-canaliculatus_F_contig12391:670..671Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12391 671..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12391.2031.1prot_H-canaliculatus_F_contig12391.2031.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12391 290..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12391.2031.1

>prot_H-canaliculatus_F_contig12391.2031.1 ID=prot_H-canaliculatus_F_contig12391.2031.1|Name=mRNA_H-canaliculatus_F_contig12391.2031.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
RSFFHRTAAFSRATSSTFTVDHDRCARTHASIPKAYHVVSRRRKIQGRRC
RRGTRLGGSRLWAWRAPRPACKGWASTLWPSKALAEKTTGNPNTADEHAS
CVFVGPAPPRHARCRQLILVFSQQPE*
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mRNA from alignment at H-canaliculatus_F_contig12391:290..671+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12391.2031.1 ID=mRNA_H-canaliculatus_F_contig12391.2031.1|Name=mRNA_H-canaliculatus_F_contig12391.2031.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=382bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12391:290..671+ (Hapterophycus canaliculatus Oshoro5f female)
CGTAGCTTCTTCCATCGGACAGCCGCCTTCTCTCGCGCCACGTCTTCCAC
GTTCACAGTCGATCACGACCGATGCGCGCGCACACATGCCTCCATCCCGA
AGGCGTATCATGTTGTTTCACGCCGCCGAAAAATACAAGGGCGGCGCTGC
CGTCGCGGGACACGCCTGGGTGGTTCTCGCCTGTGGGCATGGCGAGCGCC
TCGTCCAGCGTGCAAGGGTTGGGCTAGCACGCTGTGGCCTTCGAAGGCCC
TTGCCGAAAAAACAACGGGGAACCCAAACACCGCAGATGAGCACGCCTCC
TGCGTTTTCGTCGGACCGGCCCCGCCACGGCACGCGAGATGCCGACAATT
AATTCTCGTTTTTTCGCAACAGCCCGAATAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12391:290..671+

>mRNA_H-canaliculatus_F_contig12391.2031.1 ID=mRNA_H-canaliculatus_F_contig12391.2031.1|Name=mRNA_H-canaliculatus_F_contig12391.2031.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12391:290..671+ (Hapterophycus canaliculatus Oshoro5f female)
CGTAGCTTCTTCCATCGGACAGCCGCCTTCTCTCGCGCCACGTCTTCCAC
GTTCACAGTCGATCACGACCGATGCGCGCGCACACATGCCTCCATCCCGA
AGGCGTATCATGTTGTTTCACGCCGCCGAAAAATACAAGGGCGGCGCTGC
CGTCGCGGGACACGCCTGGGTGGTTCTCGCCTGTGGGCATGGCGAGCGCC
TCGTCCAGCGTGCAAGGGTTGGGCTAGCACGCTGTGGCCTTCGAAGGCCC
TTGCCGAAAAAACAACGGGGAACCCAAACACCGCAGATGAGCACGCCTCC
TGCGTTTTCGTCGGACCGGCCCCGCCACGGCACGCGAGATGCCGACAATT
AATTCTCGTTTTTTCGCAACAGCCCGAATAACGTAGCTTCTTCCATCGGA
CAGCCGCCTTCTCTCGCGCCACGTCTTCCACGTTCACAGTCGATCACGAC
CGATGCGCGCGCACACATGCCTCCATCCCGAAGGCGTATCATGTTGTTTC
ACGCCGCCGAAAAATACAAGGGCGGCGCTGCCGTCGCGGGACACGCCTGG
GTGGTTCTCGCCTGTGGGCATGGCGAGCGCCTCGTCCAGCGTGCAAGGGT
TGGGCTAGCACGCTGTGGCCTTCGAAGGCCCTTGCCGAAAAAACAACGGG
GAACCCAAACACCGCAGATGAGCACGCCTCCTGCGTTTTCGTCGGACCGG
CCCCGCCACGGCACGCGAGATGCCGACAATTAATTCTCGTTTTTTCGCAA
CAGCCCGAATAA
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