mRNA_H-canaliculatus_F_contig10177.203.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10177.203.1
Unique NamemRNA_H-canaliculatus_F_contig10177.203.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 5.330e-39
Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +VREVT+IK A+VPLVKF HV SG+QVDVCFDQ  G+ SG+AA+ MMRQMQPVRPLVMVLKAYMGQRKLNETYHGG+GSFLLQ
Sbjct:  351 EVREVTVIKSARVPLVKFVHVGSGVQVDVCFDQESGMKSGRAARAMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGVGSFLLQ 433
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.680e-37
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +VREVT+IK A+VPLVKF HV SG+QVDVCFDQ  G+ SG+AA+ MMRQMQPVRPLVMVLKAYM QRKLNETYHGGIGSFLLQ
Sbjct:  272 EVREVTVIKKARVPLVKFVHVGSGVQVDVCFDQESGMQSGRAARAMMRQMQPVRPLVMVLKAYMAQRKLNETYHGGIGSFLLQ 354
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A3M6VIB7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIB7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.580e-18
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H +S I VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GGIGSFLLQ
Sbjct:  213 VIDKARIPIVKMVHKTSDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKCFMAQRGLNETYSGGIGSFLLQ 289
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A484DRJ3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRJ3_BRELC)

HSP 1 Score: 87.4 bits (215), Expect = 2.720e-18
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H  SGI VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct:  255 VIDKARIPIVKMVHKVSGIHVDVSFNIAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 331
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A7S4DIS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIS6_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 3.680e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H  S + VD+ F+Q  GLA+G   +  MR+  PVRPL++V K ++ QR+LNETY GG+GSFLLQ
Sbjct:  183 VIDSARIPIVKLRHKESQVHVDISFNQPSGLATGACVQRFMRKFPPVRPLLLVAKKFLQQRELNETYTGGVGSFLLQ 259
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: M4B1R5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1R5_HYAAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.010e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H +S I VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct:  236 VIHKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 312
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A0W8D8H1_PHYNI (Non-canonical poly(A) RNA polymerase PAPD5 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D8H1_PHYNI)

HSP 1 Score: 86.3 bits (212), Expect = 6.630e-18
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H  S I VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct:  213 VIDKARIPIVKMVHKESNIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 289
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: H3GMU5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMU5_PHYRM)

HSP 1 Score: 85.9 bits (211), Expect = 9.090e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H +S I VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct:  213 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 289
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BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: G4YH03_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YH03_PHYSP)

HSP 1 Score: 85.9 bits (211), Expect = 9.220e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H +S I VDV F+ AGGLA+G   K  MR     RPL +VLK +M QR LNETY GG+GSFLLQ
Sbjct:  222 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 298
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A225WB21_9STRA (Poly(A) RNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WB21_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.690e-17
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249
            +I  A++P+VK  H SS I VDV F+ AGGLA+G   K  MR     RPL +VLK +  QR LNETY GG+GSFLLQ
Sbjct:  207 VIDKARIPIVKMVHKSSDIHVDVSFNVAGGLATGDLVKHYMRVYPAFRPLTLVLKYFTAQRGLNETYSGGVGSFLLQ 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPV2_ECTSI5.330e-3981.93Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5K966_9PHAE2.680e-3781.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A3M6VIB7_9STRA2.580e-1857.14Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A484DRJ3_BRELC2.720e-1857.14Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S4DIS6_HETAK3.680e-1850.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
M4B1R5_HYAAE5.010e-1855.84Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0W8D8H1_PHYNI6.630e-1855.84Non-canonical poly(A) RNA polymerase PAPD5 n=13 Ta... [more]
H3GMU5_PHYRM9.090e-1855.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YH03_PHYSP9.220e-1855.84Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A225WB21_9STRA1.690e-1755.84Poly(A) RNA polymerase n=1 Tax=Phytophthora megaka... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10177contigH-canaliculatus_F_contig10177:4145..5063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue3.9e-32
Seed eggNOG ortholog2880.D8LPV2
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.866209-CDS-H-canaliculatus_F_contig10177:4144..42371622928646.866209-CDS-H-canaliculatus_F_contig10177:4144..4237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10177 4145..4237 -
1696845511.7944481-CDS-H-canaliculatus_F_contig10177:4144..42371696845511.7944481-CDS-H-canaliculatus_F_contig10177:4144..4237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10177 4145..4237 -
1622928646.8769338-CDS-H-canaliculatus_F_contig10177:4907..50631622928646.8769338-CDS-H-canaliculatus_F_contig10177:4907..5063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10177 4908..5063 -
1696845511.813209-CDS-H-canaliculatus_F_contig10177:4907..50631696845511.813209-CDS-H-canaliculatus_F_contig10177:4907..5063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10177 4908..5063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10177.203.1prot_H-canaliculatus_F_contig10177.203.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10177 4145..5063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10177.203.1

>prot_H-canaliculatus_F_contig10177.203.1 ID=prot_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQM
QPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ
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mRNA from alignment at H-canaliculatus_F_contig10177:4145..5063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=919bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGCGGGAGGTGACATTGATCAAAGGGGCGAAGGTTCCCCTCGTGAA
GTTCACGCACGTCTCTTCCGGCATCCAGGTGGACGTGTGCTTCGACCAGG
CCGGAGGTCTAGCGTCGGGAAAGGCGGCCAAGGACATGATGCGCCAGATG
CAACCGGTGGGTGGGCTCGTTGGCCTCGGCCGGCCGAAGCCCTGCCGTGT
CTCAGATAGTCGGTCGACTCGTCGTCCTTCGGATCTAGGTTCACAGTCGT
TCGAAGCAGATTCGCTCGTTCAGGAACAGTGCTGAGCGCCGTGCCTGCAC
GGGCGGTGCGGTAGACGTGGGGTACCGCACGCGTCGTAAGTGTGCGTTGC
GTCGTGCGGGCGTACCCAGTAAGGTGAGACCTCACGAGTCGTCCTTTCGT
GGCGAGACCGCCCCCCCCCAACCCCGCCGCCCTTCGGGACCCCTTCCCCC
CACCCACAAGGGGGCACACGGATGACAATGACGGATTATCACGCGCAAAC
TACTTGAAGCTCGATATCGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT
CGCCACACTTATTCCCACATACTGTACAGGGGGGACGTTCGATACTCACC
CCCTCCTGGGTCTACCGGGGAGAGCGCGTCCTGAATCAAATCTATGTCAA
GTTCATCGGTGCGCCTTTTTTCAAACATCACCACGCGTCCATAGGGCCGA
GAAAAAGAGGAGAGGTGGGGGGGATGAGCGTCCTTGATTGTCATCCGCGC
GCCCTCTTGCACCCAACACCCAAGAACCCCACCTCTGATACCTTACAACC
GACGCACATCGGAAACACCCGCGCAGGTGCGACCTTTGGTGATGGTGCTC
AAGGCCTACATGGGGCAGCGGAAGCTCAACGAGACCTACCACGGGGGAAT
CGGCTCCTTTCTCCTGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10177:4145..5063-

>mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGCGGGAGGTGACATTGATCAAAGGGGCGAAGGTTCCCCTCGTGAA
GTTCACGCACGTCTCTTCCGGCATCCAGGTGGACGTGTGCTTCGACCAGG
CCGGAGGTCTAGCGTCGGGAAAGGCGGCCAAGGACATGATGCGCCAGATG
CAACCGAAGGTGCGGGAGGTGACATTGATCAAAGGGGCGAAGGTTCCCCT
CGTGAAGTTCACGCACGTCTCTTCCGGCATCCAGGTGGACGTGTGCTTCG
ACCAGGCCGGAGGTCTAGCGTCGGGAAAGGCGGCCAAGGACATGATGCGC
CAGATGCAACCGGTGCGACCTTTGGTGATGGTGCTCAAGGCCTACATGGG
GCAGCGGAAGCTCAACGAGACCTACCACGGGGGAATCGGCTCCTTTCTCC
TGCAGGTGCGACCTTTGGTGATGGTGCTCAAGGCCTACATGGGGCAGCGG
AAGCTCAACGAGACCTACCACGGGGGAATCGGCTCCTTTCTCCTGCAG
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