mRNA_H-canaliculatus_F_contig1239.2029.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1239.2029.1
Unique NamemRNA_H-canaliculatus_F_contig1239.2029.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1239.2029.1 vs. uniprot
Match: A0A6U3ZS16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZS16_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-8
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:   16 SLTMGSVGKMTTYQLRQEADARGLLKGL-------RHVNHGTLLKRLVQVIVEEEHERGRRGS-------------QGAAGPSHSELEKERNRKERSERKAAAIERSKQRQADLSYFNTKKLSNVKY 336
            ++T+ +V  +T +QLRQE   RG+   +       R +N+   L+ +V  +++E+ ER ++ +              GA  P   E  ++R  +E++ERK AAIERSK+RQAD  YF  +K +N K+
Sbjct:   21 TITLDNVHALTIFQLRQELTRRGIFDDIFGHEGEKRRINYNNCLEVMVGELLKEKDEREKKHALELEEKMRLGKPLDGATTPLEDETLQQRLAREKNERKQAAIERSKKRQADRQYFAARKATNEKH 147
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BLAST of mRNA_H-canaliculatus_F_contig1239.2029.1 vs. uniprot
Match: A0A836CHB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.390e-7
Identity = 61/186 (32.80%), Postives = 85/186 (45.70%), Query Frame = 1 
Query:   19 LTMGSVGKMTTYQLRQEADARGLLKGLRHVNHGTLLKRLVQ---------------------VIVEEEHERGRR------------GSQGAAGPSHSELEKERNRKERSERKAAAIERSKQRQADLSYFNTKKLSNVK-YEGKSV---------------VHVSSQQEEE--VSVINPRRHKIFVR 423
            + M +V  +TTYQLRQE + RGLL  L  VN+ TLL+RLVQ                      +VEEE E  R+            G         +   + R R+ER ERK AA++RS  RQ+D +YF +K  +NV   +G S                  +S++  E   +S INPR  K++ R
Sbjct:   14 IDMHNVHTLTTYQLRQEIERRGLLGDLTTVNYNTLLQRLVQESVHDAASLLLCHIHVSTILKALVEEEREAERKETVLLKRLSEVPGIMRCYASRGTLYVQARLRREREERKQAALQRSIARQSDPAYFASKAQANVPPLKGSSAGAXXXXXXXAAEPCDAALSTEDAEPPLISKINPRGFKVYSR 199
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BLAST of mRNA_H-canaliculatus_F_contig1239.2029.1 vs. uniprot
Match: A0A7S2K1Y5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Y5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.020e-6
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   13 MSLTMGSVGKMTTYQLRQEADARG-----LLKGLRHVNHGTLLKRLVQVIVEEEHERGRRGSQGAAGPSHSELEKERNRK------ERSERKAAAIERSKQRQADLSYFNTKKLSNV 330
            M +T+ +V K++ +QLRQE  ARG     + +G   +N+  LL R+VQ++ +E+  +    S+        +LE ER  K      E+++RKAAA+ERS+ RQA+ +YF +K   NV
Sbjct:   10 MVITLENVQKLSVFQLRQELIARGEFLPNVYQGT--INYQVLLARMVQILHDEKEAKDEAQSR--------KLEMERKDKILSLEQEKADRKAAALERSRCRQANKAYFESKHKGNV 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1239.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6U3ZS16_9STRA2.080e-833.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CHB1_9STRA1.390e-732.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2K1Y5_9STRA7.020e-636.75Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1239contigH-canaliculatus_F_contig1239:25200..26810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_006340.1
Exons4
Model size426
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1239.2029.1prot_H-canaliculatus_F_contig1239.2029.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1239 25200..26810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.7640514-CDS-H-canaliculatus_F_contig1239:25199..252861622928953.7640514-CDS-H-canaliculatus_F_contig1239:25199..25286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25200..25286 -
1696845627.908456-CDS-H-canaliculatus_F_contig1239:25199..252861696845627.908456-CDS-H-canaliculatus_F_contig1239:25199..25286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25200..25286 -
1622928953.7736495-CDS-H-canaliculatus_F_contig1239:25477..255891622928953.7736495-CDS-H-canaliculatus_F_contig1239:25477..25589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25478..25589 -
1696845627.92066-CDS-H-canaliculatus_F_contig1239:25477..255891696845627.92066-CDS-H-canaliculatus_F_contig1239:25477..25589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25478..25589 -
1622928953.7838113-CDS-H-canaliculatus_F_contig1239:25959..260451622928953.7838113-CDS-H-canaliculatus_F_contig1239:25959..26045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25960..26045 -
1696845627.930318-CDS-H-canaliculatus_F_contig1239:25959..260451696845627.930318-CDS-H-canaliculatus_F_contig1239:25959..26045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 25960..26045 -
1622928953.7927148-CDS-H-canaliculatus_F_contig1239:26669..268101622928953.7927148-CDS-H-canaliculatus_F_contig1239:26669..26810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 26670..26810 -
1696845627.9404333-CDS-H-canaliculatus_F_contig1239:26669..268101696845627.9404333-CDS-H-canaliculatus_F_contig1239:26669..26810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1239 26670..26810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1239.2029.1

>prot_H-canaliculatus_F_contig1239.2029.1 ID=prot_H-canaliculatus_F_contig1239.2029.1|Name=mRNA_H-canaliculatus_F_contig1239.2029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MARNMSLTMGSVGKMTTYQLRQEADARGLLKGLRHVNHGTLLKRLVQVIV
EEEHERGRRGSQGAAGPSHSELEKERNRKERSERKAAAIERSKQRQADLS
YFNTKKLSNVKYEGKSVVHVSSQQEEEVSVINPRRHKIFVR*
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mRNA from alignment at H-canaliculatus_F_contig1239:25200..26810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1239.2029.1 ID=mRNA_H-canaliculatus_F_contig1239.2029.1|Name=mRNA_H-canaliculatus_F_contig1239.2029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1239:25200..26810- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAGGAATATGTCCCTCACGATGGGTTCAGTGGGTAAAATGACGAC
GTACCAGCTGAGGCAGGAGGCAGATGCACGAGGACTGCTCAAAGGCTTGA
GGCATGTGAATCACGGTACTCTCTTGAAACGTCTGGTTCAGGTGACAGGA
AATCGAACTTGCAAAGATCTTTCCCCAACTTTTTTGGTGTACACGTACTA
TACAGGTATGATCTTCTAAGGATTTCGTAGTTCATTTGGAAGTAAAAATC
TTTGCGTTTAACGCAATACAGATTGCAATCTACGTGCTGTGAACATGGAA
GCCTCGAAGGCGCATCGGTTTAGATGCGTATTGCATGGGTATTGAAGCGT
TCTTCGATGCTGCTCAGACACGAGTAATTTTAGTCTCGCGTCAAGATTTT
CCACCCCATTCTGTGAACGCCAATCGCCAATTTTGGGATCGATCGCAGAT
CTATATGTGTACATACTCGTGTTTTCTTTTCGAAACGTTTGGACAAACCC
GAGCCTTGTTTGTTTAGTGTTACTGTGCCATCCGCGCCAACGAATGTACT
ACACCATGAGAAGACTTGCTGGTATTCACCCTCCACATGTAGAAGTTTCG
GACTTTCGACATGTCCACCTGCGCAATAGTGGCGTAGATCGTGCCACAAG
CCTGTTCCACCTCAGTTCGAGCTTTTGTGTGACCACGGTGGCCTACAACC
ACAGAAATAACCAAAACAAGTGGGAAATCTACACAGACTACTCTAAGCTC
GGACTCTCTTTCCAGGTAATTGTCGAAGAAGAGCACGAGCGAGGGCGGCG
GGGCTCGCAAGGAGCGGCTGGACCTTCGCATTCGGAGTTGGAGAAGGAAA
GGTACTGTCTGTCACGCAACCGAAGAAAATAGAGAGCTTGCCTCATTTGG
TGTACCTGACGGTCCAAAAAGTACACCGTCCAGACCCCCGAAGAGTCCCT
CGGGCATCATCGGATATCACGACTTCCGGTATCATCGTAGCTGGCCTACT
TTCTCACCCGCACTGTTGGGTGTTAACTTCGTAGATCAGGCAATAGGATT
TTTTAAGAGGCACAGAATAACCGCTCTCGGAACATTGACGTTATATGTGA
GTGTCAGGGCATTTTTAGTACGTCATTGAGGCGAGTTGAAACCTATAAGA
AGAATCGACGTCTGAAATAACCGGGGTGAGCAGGCCCGATGAACTGGTTT
CCTCGTCCGATTCTCCCGCAGAAACCGAAAAGAGAGGAGCGAGCGAAAGG
CGGCCGCAATAGAGCGAAGCAAGCAGCGCCAGGCTGATCTCAGCTATTTC
AACACCAAGAAGCTGTCCAACGTAAAATACGAGGTACTGCATGAAACGAA
ACTCTACATGCTGATTACCCATACCCGTCAAGTACAACCAATATCCCAAA
GTTGAGTTCGCATGTCTGCTACAGAATGTACGCGCAAGAGTTATATGATC
CCATTCACATCATTCACGCTCTTCGTTGCTTTTTCGTGGCATGCCCACCT
CGGCCCTTTGATGTATTTTGACAGGGGAAATCGGTCGTCCATGTATCATC
GCAACAGGAAGAAGAGGTGTCAGTCATTAACCCCCGTCGCCACAAGATTT
TTGTTCGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1239:25200..26810-

>mRNA_H-canaliculatus_F_contig1239.2029.1 ID=mRNA_H-canaliculatus_F_contig1239.2029.1|Name=mRNA_H-canaliculatus_F_contig1239.2029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1239:25200..26810- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAGGAATATGTCCCTCACGATGGGTTCAGTGGGTAAAATGACGAC
GTACCAGCTGAGGCAGGAGGCAGATGCACGAGGACTGCTCAAAGGCTTGA
GGCATGTGAATCACGGTACTCTCTTGAAACGTCTGGTTCAGATGGCGAGG
AATATGTCCCTCACGATGGGTTCAGTGGGTAAAATGACGACGTACCAGCT
GAGGCAGGAGGCAGATGCACGAGGACTGCTCAAAGGCTTGAGGCATGTGA
ATCACGGTACTCTCTTGAAACGTCTGGTTCAGGTAATTGTCGAAGAAGAG
CACGAGCGAGGGCGGCGGGGCTCGCAAGGAGCGGCTGGACCTTCGCATTC
GGAGTTGGAGAAGGAAAGGTAATTGTCGAAGAAGAGCACGAGCGAGGGCG
GCGGGGCTCGCAAGGAGCGGCTGGACCTTCGCATTCGGAGTTGGAGAAGG
AAAGAAACCGAAAAGAGAGGAGCGAGCGAAAGGCGGCCGCAATAGAGCGA
AGCAAGCAGCGCCAGGCTGATCTCAGCTATTTCAACACCAAGAAGCTGTC
CAACGTAAAATACGAGAAACCGAAAAGAGAGGAGCGAGCGAAAGGCGGCC
GCAATAGAGCGAAGCAAGCAGCGCCAGGCTGATCTCAGCTATTTCAACAC
CAAGAAGCTGTCCAACGTAAAATACGAGGGGAAATCGGTCGTCCATGTAT
CATCGCAACAGGAAGAAGAGGTGTCAGTCATTAACCCCCGTCGCCACAAG
ATTTTTGTTCGATGAGGGAAATCGGTCGTCCATGTATCATCGCAACAGGA
AGAAGAGGTGTCAGTCATTAACCCCCGTCGCCACAAGATTTTTGTTCGAT
GA
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