mRNA_H-canaliculatus_F_contig1238.2024.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1238.2024.1
Unique NamemRNA_H-canaliculatus_F_contig1238.2024.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 389 bits (1000), Expect = 4.670e-130
Identity = 239/344 (69.48%), Postives = 277/344 (80.52%), Query Frame = 3 
Query:  162 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED-EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSNSGPNVKNTELAARQQKGAAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELPVEMRNMVNSI----GAGGANDGR 1178
            MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RAERTTLAELTRLV RDQGIM VSRAGKT+TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + +++NIRL Y+L+PLEVLVRTRGPQFHSHA+KTFSKVAGLVVDCFLRHGRRTLPDVKEE+L R   AA+ARKAL+   +       ++ +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA A  + ++G  +S+ +G N +N ELA RQQKGAAQR                   XXXXXXXXXXXX   ELPVEMR++V+S+      GGA DGR
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPA-DNDSKGKSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXX---ELPVEMRSLVSSMEEGFDGGGATDGR 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 5.790e-123
Identity = 212/290 (73.10%), Postives = 238/290 (82.07%), Query Frame = 3 
Query:  162 MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEED--EEVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAGSHGARGNGSSSN------SGPNVKNTELAARQQKGAAQ 1007
            MAFLL+SQMPL AL+ SR+KL+L+VIEE+HGPIVSTVAEVL+RA+RTTLAELTRLV RDQGIM VSRAGKT TKVT+ANVKESLLIM QHNMV AAMPTE+E+R+ARAS + ++ NIRL Y+L+PLEVLVRTRGPQFHSHA++TFSKVAGLVVDCFLRHGRRTLPDVKEE+L R   AA+ARKAL+   ED       D  +EVT ESIQKSFEELVM KYIDKV KLDL+TPTVEPEKAKKPSMTFGA AGS                 +G N +N ELA RQQKGAAQ
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANP-EDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQ 289
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A5J5AFJ9_9ASTE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AFJ9_9ASTE)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-5
Identity = 56/222 (25.23%), Postives = 100/222 (45.05%), Query Frame = 3 
Query:  219 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKV-AKLDLITPTVEPEKAKK 881
            KL +N+I  + G IV+ V E L+R    +L ++ RL                 T+++  NVK SLL+++QHN V+A    ++E       G  + T I   Y ++   ++   R P+F +  S+   K    + +  L+HGR ++     ++L R +  +   +  SQ                 E++Q++F  LV  +Y+++  A    + P  E E A K
Sbjct:    8 KLGINLISSYFGDIVAKVCECLLRKGTLSLGQIVRL-----------------TELSRENVKNSLLVLIQHNCVQA-FTIQQE------GGFQEETKIITQYMVLFDIIIHHMRFPKFLAIVSEDLGKECEEIFEGLLQHGRLSV----NQILERHKQTSNQSEGNSQ-----------------EAVQENFSRLVNARYVERCPAHQPFLAPLTEEETAAK 184
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Match: A0A6P4M5S8_GOSAR (DNA-directed RNA polymerase III subunit RPC3 n=5 Tax=Gossypium TaxID=3633 RepID=A0A6P4M5S8_GOSAR)

HSP 1 Score: 55.5 bits (132), Expect = 9.270e-5
Identity = 57/223 (25.56%), Postives = 102/223 (45.74%), Query Frame = 3 
Query:  219 KLMLNVIEEFHGPIVSTVAEVLIRAERTTLAELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTERELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAGLVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDEEVTGESIQKSFEELVMGKYIDKVAKLD--LITPTVEPEKAKK 881
            K  +N+I    G +V+ V E L+R    TL  + R                  T++TS+ VK SLL+++QHN V+A +  +         GA Q+T    L+      ++ R R P+F +  SK   K    +++  L+HGR +L    +++  RA+           + ++GG+          + +Q++F +L+   +I++    +  L  PT E E A+K
Sbjct:    8 KYAVNLITAHFGDLVAKVCECLLRKGPLTLQAIVR-----------------STELTSSQVKNSLLVLIQHNCVQAFILDQTG---EHGDGAKQSTQYIALFD----NIIQRWRFPKFLTMVSKKLDKQCAELLEGLLQHGRLSL----KQMFDRAK-----------SGQNGGD----------DVVQEAFVKLLNAHFIERCPASEPVLTNPTKEEEAARK 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1238.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JM01_9PHAE4.670e-13069.48DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI5.790e-12373.10DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A5J5AFJ9_9ASTE1.530e-525.23DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A6P4M5S8_GOSAR9.270e-525.56DNA-directed RNA polymerase III subunit RPC3 n=5 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1238contigH-canaliculatus_F_contig1238:20751..27614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase III subunit RPC82-related, helix-turn-helix
Ec32 orthologEc-21_000340.1
Exons10
Model size1179
Cds size1017
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.9617164-UTR-H-canaliculatus_F_contig1238:20750..208091622928952.9617164-UTR-H-canaliculatus_F_contig1238:20750..20809Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 20751..20809 +
1696845627.4898157-UTR-H-canaliculatus_F_contig1238:20750..208091696845627.4898157-UTR-H-canaliculatus_F_contig1238:20750..20809Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 20751..20809 +
1622928952.975115-UTR-H-canaliculatus_F_contig1238:21440..215191622928952.975115-UTR-H-canaliculatus_F_contig1238:21440..21519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 21441..21519 +
1696845627.498056-UTR-H-canaliculatus_F_contig1238:21440..215191696845627.498056-UTR-H-canaliculatus_F_contig1238:21440..21519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 21441..21519 +
1622928952.990421-UTR-H-canaliculatus_F_contig1238:21786..218091622928952.990421-UTR-H-canaliculatus_F_contig1238:21786..21809Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 21787..21809 +
1696845627.5064328-UTR-H-canaliculatus_F_contig1238:21786..218091696845627.5064328-UTR-H-canaliculatus_F_contig1238:21786..21809Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1238 21787..21809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.0049818-CDS-H-canaliculatus_F_contig1238:21809..219141622928953.0049818-CDS-H-canaliculatus_F_contig1238:21809..21914Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 21810..21914 +
1696845627.5146677-CDS-H-canaliculatus_F_contig1238:21809..219141696845627.5146677-CDS-H-canaliculatus_F_contig1238:21809..21914Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 21810..21914 +
1622928953.0156136-CDS-H-canaliculatus_F_contig1238:22932..230641622928953.0156136-CDS-H-canaliculatus_F_contig1238:22932..23064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 22933..23064 +
1696845627.522869-CDS-H-canaliculatus_F_contig1238:22932..230641696845627.522869-CDS-H-canaliculatus_F_contig1238:22932..23064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 22933..23064 +
1622928953.0271916-CDS-H-canaliculatus_F_contig1238:24549..246781622928953.0271916-CDS-H-canaliculatus_F_contig1238:24549..24678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 24550..24678 +
1696845627.531097-CDS-H-canaliculatus_F_contig1238:24549..246781696845627.531097-CDS-H-canaliculatus_F_contig1238:24549..24678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 24550..24678 +
1622928953.038063-CDS-H-canaliculatus_F_contig1238:25416..255481622928953.038063-CDS-H-canaliculatus_F_contig1238:25416..25548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 25417..25548 +
1696845627.5431817-CDS-H-canaliculatus_F_contig1238:25416..255481696845627.5431817-CDS-H-canaliculatus_F_contig1238:25416..25548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 25417..25548 +
1622928953.0494988-CDS-H-canaliculatus_F_contig1238:25913..260161622928953.0494988-CDS-H-canaliculatus_F_contig1238:25913..26016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 25914..26016 +
1696845627.5512154-CDS-H-canaliculatus_F_contig1238:25913..260161696845627.5512154-CDS-H-canaliculatus_F_contig1238:25913..26016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 25914..26016 +
1622928953.0632951-CDS-H-canaliculatus_F_contig1238:26307..264221622928953.0632951-CDS-H-canaliculatus_F_contig1238:26307..26422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 26308..26422 +
1696845627.5593214-CDS-H-canaliculatus_F_contig1238:26307..264221696845627.5593214-CDS-H-canaliculatus_F_contig1238:26307..26422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 26308..26422 +
1622928953.0733495-CDS-H-canaliculatus_F_contig1238:26713..268731622928953.0733495-CDS-H-canaliculatus_F_contig1238:26713..26873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 26714..26873 +
1696845627.5678885-CDS-H-canaliculatus_F_contig1238:26713..268731696845627.5678885-CDS-H-canaliculatus_F_contig1238:26713..26873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 26714..26873 +
1622928953.085445-CDS-H-canaliculatus_F_contig1238:27473..276141622928953.085445-CDS-H-canaliculatus_F_contig1238:27473..27614Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 27474..27614 +
1696845627.577807-CDS-H-canaliculatus_F_contig1238:27473..276141696845627.577807-CDS-H-canaliculatus_F_contig1238:27473..27614Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1238 27474..27614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1238.2024.1prot_H-canaliculatus_F_contig1238.2024.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1238 21810..27614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1238.2024.1

>prot_H-canaliculatus_F_contig1238.2024.1 ID=prot_H-canaliculatus_F_contig1238.2024.1|Name=mRNA_H-canaliculatus_F_contig1238.2024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bp
MAFLLDSQMPLTALQPSRQKLMLNVIEEFHGPIVSTVAEVLIRAERTTLA
ELTRLVQRDQGIMAVSRAGKTKTKVTSANVKESLLIMMQHNMVKAAMPTE
RELRRARASGASQTTNIRLLYSLMPLEVLVRTRGPQFHSHASKTFSKVAG
LVVDCFLRHGRRTLPDVKEEVLSRARGAAKARKALSQANEDGGEEDEEDE
EVTGESIQKSFEELVMGKYIDKVAKLDLITPTVEPEKAKKPSMTFGAAAG
SHGARGNGSSSNSGPNVKNTELAARQQKGAAQRSARKRRMLGHASNGGGG
GGGGKGEEEEDDSDDEDELPVEMRNMVNSIGAGGANDGR
back to top

mRNA from alignment at H-canaliculatus_F_contig1238:20751..27614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1238.2024.1 ID=mRNA_H-canaliculatus_F_contig1238.2024.1|Name=mRNA_H-canaliculatus_F_contig1238.2024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1238:20751..27614+ (Hapterophycus canaliculatus Oshoro5f female)
GGAACGCAGAGGGCAGAGCACCAGAACCCTCCCCGGAGCCACGGCTGTGT
GACGTTCAGGTGAGCTTAACAGAGACCACACGGCCAGAGCAGGACTTGAA
TAGCCGGAACTCTCGTCGGCAAGACCTTTTCTCCGTGCCGGGGGGCAGCT
GACAACTGCCATTCCCGCCCGGGGTGCGCGAGATCCAAGCACACAAGGAG
ACAAGCACACCGCCGTTTCTTTCGCGTGAGATTTGTTCAGTCAGCGGGCT
GGTGTTGTGCGGCTGGTCGGTGCGGCTTCGAGATACTTCACAGGACCTCG
CATGCACTATCCATGCGTCTATTCGGCACTGTCTGTGAATGTCGTGGAAG
GTGTTGTCTCAGGGTGCCCTCATCTCGTCCGCTTAGCGGCAGGGAAGGAT
AGGTACCTGGAGGCCAAGCGACCGGCGCCTATTTTGTTATTGCGCCGCAT
CCTACGACCCTCGACTGCGCTACTGCAACCTCAGGTCTTCGTTATGTTCG
AGCTGTTCAATACGCAGCGTCGGTGCGGTGTGCTTTTTGTGTGTTACGTA
GGTGTTGCTGTCCACCCGCACAACAGGAAAGCGGTTTCCTACGCTGCAGA
TAAAGCAGGGCGAAGTGTGGCAACGCCTGTCGAATTTTTATTTGTTTCTG
TATTTTCCGTTGCATGTGTCGTGCGGCGTGCGGCGGGCAGGAAACATCTC
CGCGAACGATCTCCACAAGAGGAGAGAGGAGCCCCGTGGCTGATCGGCTG
ATCGGCTAATCTCCTTCAGGTGTGCGTGCATTTGCCTGCGGTGGGAGATC
TCCCTTCGTTCTGGCGGCGCATCGGCAAATCTCGTGGGTCAAGCACGAGC
GCAGTAGCGCAGCCGAAGAGCGACGAACCCCCCCATCCATCACACGCGAC
GTACTTTTTTTTCGTCTACCGATGGCTGCTTGTCTCAGAAGCTGCGCCGA
GGGAGGTTGTCGGGTGATTTTGTGATTTTGTGATTTTTCTTTTAACCCTC
CTGGTTGTTCTTGGGGAATATTGGCTGACTTTACAGGGGTTGGGACCGCG
CTAGCAGCCATGGCGTTTCTCCTGGACAGCCAGATGCCGCTCACGGCTCT
CCAGCCTTCGAGGCAGAAGCTAATGCTGAACGTTATCGAGGAGTTCCACG
GGCCCATCGTTTCGGTGAGTTTCGATTCCTCGAAATACCTGTTGTACATG
TGTGAATAGCGTTCCTCTTCGCTGATCCTTGCTTCCAGCCTCTTGTGCGC
CATCTTACATAACAAGTATCTACGTTACCTTCTGTGACAACAAGGTTGTG
TTTTGAGTGGTCTTTGCAGCCGTATGGGTGCAGTCACAGCACATGGTGAC
CAACACGCCCAACAACCACGCTGGCAAGTCAAATCAAAAGCCTCGAGCTA
CCGTGCATGTTGGTGGCGAGCGTCTGGTTTAGCCTAATCTCGCACGGATC
GTCACGGTGAGCACGTGAGCACACTGCGTTTTGACGTTGCTTTCTTGAGA
CAATTGTATGTGTGGTTGCCGGTCACCGCTTTGAACCGCCTCCCAAATGG
AAGCAAGACTGGGTGTCTCCTGCTGACTCCTGACAATATTTTCTGCCAGT
GGTCCCCTTGCACGCCGCGTTTCTTATCAGATCATACACCCTCCTGCATC
ACACGCCTTTTCTGAGCAGTCCCGTGGCATAATGACGTCTGCGTCTACGT
CTACGTCTACGTTGTGCTGCACTTCAGGACGCCAAGCGTAGCTATACCCA
CACATCCCACCTCGAATTCGAACGAGAGCGTGTAATGTAGTCCCACTGTT
GGCGGTGTTATGTTTAGTTCCATTCTCCGATAGCAGCTAGCCCAGACTAA
TGTTGCGGAGTTGCTATCAACATCATCGACACGAATTATTTATATGACAG
CCGTTGGTGCCATCAATAATTCAATTATTCGCCCAAAACATACCATACCA
TACCTCCATACCTGAATCCGGTCGGACTGCGCGCTTCGAAAGATGTCGAT
GTCGACGTAAAGAGACGGATGTAAAGGTATACTGAGAGTGGGCATGAAAT
AGGCCTGCGTGCTCTCGCATGCGCCTGCTTCATCAAGTAAAGCCGCCTGA
GCTATAAATAGCCACAAGACGTCACCACCACCAACAACAACAACAACAAC
GACAACGACACGACACAACGAACCCTCTGCAGACGGTAGCGGAGGTGCTC
ATTCGAGCGGAGCGCACGACGCTGGCTGAGCTCACGCGGTTGGTGCAGAG
AGATCAAGGAATCATGGCTGTATCTCGGGCCGGGAAAACCAAGACCAAGG
TCACCTCAGCAAACGTGAGCGGTTACGTGAGGGGTCACGCGGAGTAGAAT
GAAGCCAGTAACTTGTAAATTTTTTGCCGGTTGCAAGACCGAAGCCGCCT
GCGTAGACGTGAGGGGTGGCGTGACGCATTTTGAGGCGTGTGCTTGTAGG
GTGGGTGCAAAACCAAAATCACCTCGGCAAACGCAAGGAGAAGAGTAGTG
CAGTGTTGTGGTGTAGTAGTGTGGATAAAAAGGTACCACGGGTTGCTTGC
TGCCCTGCCGCCCTGCGGCCCTGCTGCCCTGGTGTTGCGGGATGTCGGAA
GGCACGACCGTTGGCGGCTTTCTTGTTCCGCACGCCGATCCACTCGAACA
AGATAATTGGGAGGACGACAGGTATAGGGGCGAGTGCCAAGAGGTGCTGG
TGCTGCTGTCACTTGGAAAGGAAGAGGTGCTATCAGTCAGTCGTGTATGG
CGAAGAAGAGCAACAAGGGTTTTGGATTGGCCTTGTTTTGGGGTCCCCAC
TGCAACTGTGCGCGTGCCCCTAGCGATAGAAGCGACGTCTTGGATTGATG
CCGCTACCACCGCCATGGTGGGGTACTGGTAACCGCACCGCTGTCGTAAA
GACACCGCTTCGTTGAAGTTGTGCTGCAGTGGTATGAGAAGAACAGGGTG
TGTTTGCTCCAGAATACTGCTGGAGACTGCTGGAGTAGCCTTGGAAGAGC
TGTGCCGCAGTGGAAGGAGAAGAAGAGGGTGGAATTGCTCCAGAATGCTG
CTGTAGTAGTAGTGGCAGACTTAGAAGAGCGGCGCATGCGGTACTCAATC
CCATCTTTGTACGCAAGAGGGTCTGTGTTCTGTGTTCTGTGTTCGTCACC
CGAGCCAGCTGTATGTCGTGCAGTCGTGTAGTCGTGTAGTCGTGTAGTCG
TGTGATCGTGTAGGACCCACTCCCGTGCGGACACACAGGGAACAGGGAAG
GAAGGCTGACGCTGTGGCACTGGCAGGTGCGACCATCCTACTAGGTGTGT
CGTTCCGAAGGGATGCAAGCAAAGGTCAAACTCTGACCCTTGTTTGCGAC
CATAGGGGCGGATCCGTGTCGCTGTCGTGATTGCGTAGCCTCTGGCCGTC
GCCGCTTTCAAGTGTCTATGGTCGGTTGTCGATGGAAGGGCTCGCTGCTT
CTGTGTTGGTCAGCAGAGGCAGCATCCAGCATCATGACAAAGCGAAAGAC
GAGCACCGGCAAGCAGCATGCAGCGCTGCTGGCGGAGCGGCGTGTTTCCC
ACCTGTGTCTCGCGTCGTCTACTCGACGCTCATTCTCAAGGCGCTGTTGG
TGTTGACGAAGGCGTTACGATGCAGCACTCCCTGGCGGCGGCGGCGGCGG
CGTGTGTCGCGTCGCTTGTGGCGTGGTTTTCTCCACCTCATCCCGTCCCG
CCGGCTGTTGCCCATTCGTGTGCCCGCTTGGGTGCCCATTCTTCGTGCGT
GCGTCTCTGCGTCTCTGTGTGCTTTGTCTGTGCTTTGTCTGTCTCTCAGG
TAAAGGAGTCGCTCCTGATCATGATGCAGCACAACATGGTAAAGGCCGCG
ATGCCGACGGAGAGGGAGTTGAGAAGGGCCAGGGCCAGCGGCGCCTCCCA
GACAACCAACATTCGCCTGCTCTACTCAGTGAGTAGTGAGACATGAATAA
GGCGACAACAGCGGCAAAATGCTGGTCAGATAGTGACAGCGATGGGACTT
CAGTTGCATGGTTATAGTCGTGAAGTTCCGGTGAAATGGCAACAGCAGTT
GAAAATCAGGAAGATGGAGGTGGGATGACAATGACAGTCGAGTGTCAGTG
AGATGGCCATAGCCGCGGCGCGGAGCTGTGGGTTATCGGATGGGATTCCG
CTGTGTTCGATGTGTTTGCTGGGTTTGCCGTGTGTGCCGTGTTTGATGTG
TTTACTTGAGGCTTTGCGGACCATCTTTTTGGCGACTTCTTGTTGCAGTG
TTTGGAAATGCACGCCGTCCTGGTCGGCTGCTCGAGCTAAAAACCATGCA
CAGGGGACGATAGCTCCTGCGTTGTACAGCCATGACCTCTGCCACGCCAG
AAGTCGTGTACCCATGACATGAAGAAACGTTCAAGGAGCGTTCCGCTTTT
CAAGTATCAAGTATCATGCTCTTCTTGTCTGTGGTAGATCCACCGCATAC
CTCTTCCCTCCCCTTCCCTTTACTTCACACTTCTGGCGCCGTCCATTCCA
AGTGTCAAGTGTCCAGTGTGTTCCTGGGAAGTTGACGATTTGCCAGTAGT
GTTTCGTCCCTCCGCTCTTCCTCTCCCCCTCCAGCTCCCTCTCCCTCTCC
CTCTCCCTCTCGGTCTGACCCCTCCTGCTGGCGTTGGCCCTGCTGGTGGT
GTTGATGTCCACGTAGTTAATGCCGTTGGAGGTGCTCGTAAGAACGAGAG
GCCCTCAGTTCCACTCCCACGCCAGCAAGACGTTCTCCAAGGTCGCCGGG
CTGGTGGTGGATTGCTTCTTGAGGCACGGCCGCCGGACGCTCCCTGACGT
GAGACCAATTGCCAGTGACCAATGACCGATCACCAATCACCAATCACCAA
TCACCAATCACCGATCACCAGCAGTCGCAGGCAGCACAAGTCCGACGTCG
ATGTTCGATCTACAAAAAGATGTCACGTCACACACGAATCCATCCTGATA
CGTGGTCCCTCGCAAGTAGGTATCTTTTGTCATGGTTTGATCGTTTTCAA
CCCCCGCTTTATGGCCAACTCTTGATTACACGGACAACCAACATGGACGT
CGCTCGTGCCGCCGTTGCTGTTGGTGATGCTGCCTGTTGATGCCGTTGCT
GCGGTCGCTTCCGGGGCTGGTGTTGGTGTGGGTGTTGGTGTTGGTGGTGT
CGACACAACACAGGTGAAGGAGGAGGTGCTGAGCAGAGCGAGGGGGGCGG
CCAAGGCGAGAAAAGCACTATCGCAGGCCAACGAGGACGGCGGCGAGGAG
GACGAGGAAGACGAAGGTGCAAACGGATACTACAAGTAGATGCAGGAGCT
GAGGCTCGGGTGTAAAATCGAACAGGAACACGTGATTTGCCGACGTGTGA
AACTTGTTTTTGCTCGCATCGCTGTTGTGGCGCCTAGTTCCACTTATTTT
CCTGTAAAGCTGGATCTCTCGGCTGTACAGGTTCGTGTGTAGAAACGGAT
AGACTTAGTACTGAACACTCCAGACCGGCTGATCAGCGTCTGTGCACGCG
CGCTTTGCGTGTGTGTGGGGGGGGGGGGTTGTTTTCGCTTGTGGACCTCT
GATGCAGAGGTCACGGGCGAGAGCATCCAAAAAAGCTTCGAGGAGCTAGT
GATGGGCAAGTACATCGACAAGGTGGCCAAGCTCGACCTCATCACCCCCA
CGGTCGAGCCGGAGAAAGCAAAGTGAGTCATGCAACCGAGGATGCAACCA
AGGATGCAACCAAGGATGCAAAGTGAGTCATGCAACCAAGGATCCAAAGC
GAGTCATGCAACCAAGGATGCAACCAAGGATGCAAGCAAGGACGCCACTC
GCACGCCGTGTTTTCTGGTGCTGTCATTGCTGATGGCGGCTGTGCACAAG
TAAGTCGCTCTGTTCGCCCTGTCTCCTCCTTTGGACGACTACAACGACAA
CAACAACAACAACTACAACAACTACACCAACATGGGCAACCACAACAACG
ACTCGGGCAACAGGAAGCCGTCGATGACCTTCGGAGCGGCAGCCGGCAGC
CACGGGGCTAGGGGGAACGGCAGCAGCAGCAACAGCGGACCCAACGTGAA
AAATACGGAGCTGGCGGCACGCCAGCAGAAGGGAGCGGCGCAGAGATCTG
CGAGGAAGCGCCGGATGCTCGGGGTGCGTTCGTCGGTCCGTGACGTCGTT
CCGTGACGCCATTCGCTTGGCACGCGCACTATCAACTACTCCGGAGTATT
AAACGAATACTCGTCGAAAAAAGGCCGGTTTGGGTTTTATTTCACTTGTG
CCTTTGATTTGACGCACGCGATGCGCGCTTGCGAGGATTCGAGAGCTTCG
CAGAGAACATGTACAGCAGTGAGGATGGTGATACTCGTACCGTTCGCCAT
TTTTTGGGGTGTTGCTCGAGATTTAGTACTTGCTTTTGTTGCCTGGATGG
CGTCGTCCGCACACAATGTCCACCGTCCAAGAACCTTTTTTTTTCGAGGC
TTGAGGTTGACCGTCTCTCGCCTTTTCCCCTGCAGATTCCTGGGGCAGTC
TGTTGTCAAATTCGTCCTCCTCGCGTCCTCCGCTCACTCCAATCCAATCC
AATCCAACCCAACCCTCCCAATCTCCCCCTCTAATGATGTGCTTGAGATA
ACTCTCCTTGCGAGCCGACTGACTTGGCTGGCGTGACCCCGACTGCCTGA
CTTGGTTCACTCAACAACACTCAACAACATCTCGGCAACACACCTGATCG
ATCAACCCTAACCCCGAGTGCAGCACGCCTCCAACGGCGGCGGCGGCGGC
GGCGGCGGAAAGGGCGAGGAGGAAGAAGACGACTCGGACGACGAAGACGA
GTTGCCTGTAGAGATGCGCAACATGGTCAACAGCATCGGGGCCGGCGGCG
CAAACGACGGCCGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1238:20751..27614+

>mRNA_H-canaliculatus_F_contig1238.2024.1 ID=mRNA_H-canaliculatus_F_contig1238.2024.1|Name=mRNA_H-canaliculatus_F_contig1238.2024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2034bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1238:20751..27614+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTTTCTCCTGGACAGCCAGATGCCGCTCACGGCTCTCCAGCCTTC
GAGGCAGAAGCTAATGCTGAACGTTATCGAGGAGTTCCACGGGCCCATCG
TTTCGATGGCGTTTCTCCTGGACAGCCAGATGCCGCTCACGGCTCTCCAG
CCTTCGAGGCAGAAGCTAATGCTGAACGTTATCGAGGAGTTCCACGGGCC
CATCGTTTCGACGGTAGCGGAGGTGCTCATTCGAGCGGAGCGCACGACGC
TGGCTGAGCTCACGCGGTTGGTGCAGAGAGATCAAGGAATCATGGCTGTA
TCTCGGGCCGGGAAAACCAAGACCAAGGTCACCTCAGCAAACACGGTAGC
GGAGGTGCTCATTCGAGCGGAGCGCACGACGCTGGCTGAGCTCACGCGGT
TGGTGCAGAGAGATCAAGGAATCATGGCTGTATCTCGGGCCGGGAAAACC
AAGACCAAGGTCACCTCAGCAAACGTAAAGGAGTCGCTCCTGATCATGAT
GCAGCACAACATGGTAAAGGCCGCGATGCCGACGGAGAGGGAGTTGAGAA
GGGCCAGGGCCAGCGGCGCCTCCCAGACAACCAACATTCGCCTGCTCTAC
TCAGTAAAGGAGTCGCTCCTGATCATGATGCAGCACAACATGGTAAAGGC
CGCGATGCCGACGGAGAGGGAGTTGAGAAGGGCCAGGGCCAGCGGCGCCT
CCCAGACAACCAACATTCGCCTGCTCTACTCATTAATGCCGTTGGAGGTG
CTCGTAAGAACGAGAGGCCCTCAGTTCCACTCCCACGCCAGCAAGACGTT
CTCCAAGGTCGCCGGGCTGGTGGTGGATTGCTTCTTGAGGCACGGCCGCC
GGACGCTCCCTGACTTAATGCCGTTGGAGGTGCTCGTAAGAACGAGAGGC
CCTCAGTTCCACTCCCACGCCAGCAAGACGTTCTCCAAGGTCGCCGGGCT
GGTGGTGGATTGCTTCTTGAGGCACGGCCGCCGGACGCTCCCTGACGTGA
AGGAGGAGGTGCTGAGCAGAGCGAGGGGGGCGGCCAAGGCGAGAAAAGCA
CTATCGCAGGCCAACGAGGACGGCGGCGAGGAGGACGAGGAAGACGAAGG
TGAAGGAGGAGGTGCTGAGCAGAGCGAGGGGGGCGGCCAAGGCGAGAAAA
GCACTATCGCAGGCCAACGAGGACGGCGGCGAGGAGGACGAGGAAGACGA
AGAGGTCACGGGCGAGAGCATCCAAAAAAGCTTCGAGGAGCTAGTGATGG
GCAAGTACATCGACAAGGTGGCCAAGCTCGACCTCATCACCCCCACGGTC
GAGCCGGAGAAAGCAAAAGGTCACGGGCGAGAGCATCCAAAAAAGCTTCG
AGGAGCTAGTGATGGGCAAGTACATCGACAAGGTGGCCAAGCTCGACCTC
ATCACCCCCACGGTCGAGCCGGAGAAAGCAAAGAAGCCGTCGATGACCTT
CGGAGCGGCAGCCGGCAGCCACGGGGCTAGGGGGAACGGCAGCAGCAGCA
ACAGCGGACCCAACGTGAAAAATACGGAGCTGGCGGCACGCCAGCAGAAG
GGAGCGGCGCAGAGATCTGCGAGGAAGCGCCGGATGCTCGGGGAAGCCGT
CGATGACCTTCGGAGCGGCAGCCGGCAGCCACGGGGCTAGGGGGAACGGC
AGCAGCAGCAACAGCGGACCCAACGTGAAAAATACGGAGCTGGCGGCACG
CCAGCAGAAGGGAGCGGCGCAGAGATCTGCGAGGAAGCGCCGGATGCTCG
GGCACGCCTCCAACGGCGGCGGCGGCGGCGGCGGCGGAAAGGGCGAGGAG
GAAGAAGACGACTCGGACGACGAAGACGAGTTGCCTGTAGAGATGCGCAA
CATGGTCAACAGCATCGGGGCCGGCGGCGCAAACGACGGCCGGCACGCCT
CCAACGGCGGCGGCGGCGGCGGCGGCGGAAAGGGCGAGGAGGAAGAAGAC
GACTCGGACGACGAAGACGAGTTGCCTGTAGAGATGCGCAACATGGTCAA
CAGCATCGGGGCCGGCGGCGCAAACGACGGCCGG
back to top