mRNA_H-canaliculatus_F_contig12375.2022.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12375.2022.1
Unique NamemRNA_H-canaliculatus_F_contig12375.2022.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 6.010e-68
Identity = 104/127 (81.89%), Postives = 112/127 (88.19%), Query Frame = 1 
Query:    1 VFRTLLSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRKLFAEAES-NDAEDASGVDD 378
            VFRTLLSVNWIRYKAGRKYPIPIKFIN DLN+NFRKGAYIRRL+THQ+ILLP+DPE VP+WLYLDLEFVRSGSKLRVSD+MMPEGI LHR  E  MWNEVVCTIKGRK+FA  +S  D ED   VDD
Sbjct:  165 VFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEPGMWNEVVCTIKGRKVFASGDSAGDDEDEVFVDD 291
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A485LRJ8_9STRA (Aste57867_24188 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRJ8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.120e-8
Identity = 31/103 (30.10%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:   16 LSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRK 324
            L+VN++RYK GRK  IP+ ++N + +   ++G YI  +R   +I      E++P  L++D+  +  G ++ + +I  PEG+             VV TI G++
Sbjct:  120 LTVNFLRYKPGRKVHIPLDYLNTEGSPGLKRGGYINNVR--HDIPCTIASEEIPAKLFVDVNGMHVGERIYLENITFPEGVT-----PLVKAKSVVATIAGKR 215
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A3R6YZB1_9STRA (Ribosomal_TL5_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZB1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.940e-7
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   19 SVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRK 324
            SVN++RYK GRK  IP+ F+N + +   ++G YI  +  +  I      E +P  L++D+  +  G ++ + DI  PE +      +A     VV TI G++
Sbjct:  119 SVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNV--YHEIPCTIASEAIPTKLFVDVNGMHVGQRIYLEDITFPEHVTPLVKAKA-----VVATIAGKR 213
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A6G0XNP1_9STRA (Ribosomal_TL5_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNP1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-7
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:   16 LSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRK 324
            L+VN++RYK GRK  IP+ ++N + +   ++G YI  +R    I      E++P  LY+D+  +  G ++ + +I  PE ++            VV TI G++
Sbjct:  124 LTVNFLRYKPGRKVYIPLDYLNMEGSPGLKRGGYINNVR--HEIPCTISSEEIPAKLYVDVNGMHVGERIYLENITFPEHVK-----PLIKEKSVVATIAGKR 219
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A024G2B8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2B8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.910e-7
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:   16 LSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRKLFA 333
            L+VN+IRYK GRK  IPI +IN++ +   ++G YI  +       +  D  +VP+ L +D+  +   SK  +  I  P+GI       A     ++  IKGR++ A
Sbjct:  841 LTVNFIRYKHGRKVSIPITYINEEGSPGLKRGGYINHICHEVECYVNTD--QVPKTLEIDVNGLDVDSKFFLETISFPDGIV-----PAVPAGTLLANIKGRRIQA 939
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: F0WKB2_9STRA (50S ribosomal protein L25 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WKB2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.470e-7
Identity = 33/114 (28.95%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:   16 LSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRKLFAEAESNDAE 357
            L+VN+IRYK GRK  IPI +IN++ +   ++G YI  +  +  +    + E+VP+ L +D+  +   SK  +  I  P+G+             ++  +KGR++    E+ + E
Sbjct:  129 LTVNFIRYKNGRKVSIPITYINEEGSPGIKRGGYINHI--YHEVECYINTEQVPKTLEIDVNGLDVDSKFFLETISFPDGVV-----PVVPAGTLLANLKGRRILTLPEAAEDE 235
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A482RSQ9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSQ9_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 5.400e-7
Identity = 33/104 (31.73%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   13 LLSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRK 324
            +LSVN++RY+AG    IPI+    D + + ++G Y+  ++   + ++ +    VPR L LDL     G   RV+++ +P  +R  RG +    + VV  IK  K
Sbjct:    5 ILSVNFLRYRAGVSLRIPIELRAADQSPDIKRGGYVVPVKPFLSCVVQEGAA-VPRSLPLDLSGALKGQVFRVANLSLPPCVRPARGEDG---DRVVAVIKAAK 104
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BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Match: A0A397C844_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C844_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.470e-6
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   19 SVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNILLPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEVVCTIKGRK 324
            SVN++RYK GRK  IP+ F+N + +   ++G YI  +  +  I      E +P  LY+D+  +  G ++ + +I  PE +      E+     VV TI G++
Sbjct:  120 SVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNV--YHEIPCTIASEVIPAKLYVDVNGMHVGERIYLENITFPEHVTPLVKPES-----VVATIAGKR 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12375.2022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LGR2_ECTSI6.010e-6881.89Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
A0A485LRJ8_9STRA8.120e-830.10Aste57867_24188 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R6YZB1_9STRA2.940e-731.37Ribosomal_TL5_C domain-containing protein n=2 Tax=... [more]
A0A6G0XNP1_9STRA3.030e-730.10Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A024G2B8_9STRA3.910e-733.02Cleavage and polyadenylation specificity factor su... [more]
F0WKB2_9STRA4.470e-728.9550S ribosomal protein L25 putative n=1 Tax=Albugo ... [more]
A0A482RSQ9_9ARCH5.400e-731.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A397C844_9STRA1.470e-631.37Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12375contigH-canaliculatus_F_contig12375:135..2522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog description50S ribosomal protein L25
Ec32 orthologEc-07_005340.1
Exons4
Model size387
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12375.2022.1prot_H-canaliculatus_F_contig12375.2022.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12375 135..2522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.6861727-CDS-H-canaliculatus_F_contig12375:134..2591622928952.6861727-CDS-H-canaliculatus_F_contig12375:134..259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 135..259 +
1696845627.3391516-CDS-H-canaliculatus_F_contig12375:134..2591696845627.3391516-CDS-H-canaliculatus_F_contig12375:134..259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 135..259 +
1622928952.7026439-CDS-H-canaliculatus_F_contig12375:965..10621622928952.7026439-CDS-H-canaliculatus_F_contig12375:965..1062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 966..1062 +
1696845627.3524785-CDS-H-canaliculatus_F_contig12375:965..10621696845627.3524785-CDS-H-canaliculatus_F_contig12375:965..1062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 966..1062 +
1622928952.7179048-CDS-H-canaliculatus_F_contig12375:1612..16751622928952.7179048-CDS-H-canaliculatus_F_contig12375:1612..1675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 1613..1675 +
1696845627.3654082-CDS-H-canaliculatus_F_contig12375:1612..16751696845627.3654082-CDS-H-canaliculatus_F_contig12375:1612..1675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 1613..1675 +
1622928952.72982-CDS-H-canaliculatus_F_contig12375:2420..25221622928952.72982-CDS-H-canaliculatus_F_contig12375:2420..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 2421..2522 +
1696845627.374432-CDS-H-canaliculatus_F_contig12375:2420..25221696845627.374432-CDS-H-canaliculatus_F_contig12375:2420..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12375 2421..2522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12375.2022.1

>prot_H-canaliculatus_F_contig12375.2022.1 ID=prot_H-canaliculatus_F_contig12375.2022.1|Name=mRNA_H-canaliculatus_F_contig12375.2022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
VFRTLLSVNWIRYKAGRKYPIPIKFINDDLNDNFRKGAYIRRLRTHQNIL
LPDDPEKVPRWLYLDLEFVRSGSKLRVSDIMMPEGIRLHRGGEAAMWNEV
VCTIKGRKLFAEAESNDAEDASGVDDAE*
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mRNA from alignment at H-canaliculatus_F_contig12375:135..2522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12375.2022.1 ID=mRNA_H-canaliculatus_F_contig12375.2022.1|Name=mRNA_H-canaliculatus_F_contig12375.2022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12375:135..2522+ (Hapterophycus canaliculatus Oshoro5f female)
GTATTCCGCACGCTGCTGAGCGTGAATTGGATTCGATACAAGGCAGGACG
GAAGTACCCGATCCCCATCAAGTTCATCAACGACGACCTGAACGACAACT
TCCGGAAGGGGGCGTACATACGAAGGTGAGCGTTCGGTGGCGGTGGTGGT
GGTGGTGGTGGTAGTGGGTGGGTGAAGAAGAGGAGGTAGAGGCGTGATTT
GATTCGGGGTGGTGGTTTTCTCGTCGTCGCTGTTGGGGTTCCCGTGCTGG
CACTCGGAAGATGTTTGTTTCTGCTAGATGTGGTGGCTCGTCATTTTCGT
TTGCATTTGATCTACCGCTGCTCACGATTCGCGTATTTTTTCTCTGAATA
AGGCAAGTCTCTAGGGCCAGCGGTTACAGCAGGGGGAGCTTCCCCTCGTG
GGAGTGGAAGAAGATCCAGTAATTGGTGATGGCCGTGGTGTAAACGCCGC
GTTTTATGCGGACTACGGTCTTGGTGGTATCCCTTCAGGAAACAAAAAGA
TGACACACGCGCTGTGGGCAGGCTGCTCGCGGAGGGGGAAGTCCGTCCGA
GCCAGCATTGGAAGTCGGAACGATGAAGGAAAGGGTCTGGGAGAAAGCGC
GAACGCGACCAACAAAATGCTTGGCTTTGTCGAAGCTAGAAAGGAAAGGC
TTTATTTGTCTCTGGGTGGACATCCTCGTATGGGGAAACACCAAGGGTCG
GATAATAGGCCCGGCATCAGTTTTACTTCAATATCCTTCACCACAACGAA
CCCGGTGACCTCTCCACTCCGTCCCATATACTCATCCTCCCGCCCCCGGC
TCCCATTTTGTGTATGCTTATTCTTGACCAGGTTGAGGACGCACCAGAAC
ATTCTCCTCCCCGACGACCCCGAAAAGGTCCCGAGGTGGCTGTACTTGGA
TCTCGAGTTCGTTCGCTCCGGAAGCAAGGTGATGATGGGGCGAAGTTTTT
TGCCTCTCGTCCCGTTCAACCGAGAGAAAGCTTGTGCGTCCTTGTGCCCG
CAGGGTGTTACGATGGTGTCTGGCCCGCGAGCCGAGACCTTGCTGTCGTC
GCCGTAGCTCGTCCCTGTCGGACTGGCGTTCCGGTGCGTTGCAACATCCT
CGCGGTCGGCATCGGCGTCGGCTTCGGCGTACTTGTTGATGTTGTTATAA
AACAAGCCAACAGCACCGAAGGAGTACCCACCTGAGACACTGTTTATCTC
AAGGGGCTTGTGTTAACTCCATTCAGTGAGGGTTCCATTCGAGTGACAGG
ATGAAACTATGTATCAGCAGGCAAGTTGTGGACAAAAACGTGTAAAGTTG
TGGACAAAGACGTGAAAAACGTGGGATGGGATGTTTTTGCTGATGGTGGT
TGTAGTGAAACCCTGGTATTGACTGGCCTATCCCCGCTCCCCCCCCCCCC
CTCTCTAACGCGCGCACGCGCACACGCCCGAACCCCTGGTCCTTGTCTCT
CTCTCTGTGGATCGGTGCTTTTGTGCAGCTCCGAGTGAGCGACATCATGA
TGCCCGAGGGTATCCGACTACACCGAGGCGGCGAGGCCGCGGTGAGTGAC
GTGCCTCCCTTTTATTCGACGCCCATGCTGCACGGGGTCGCACTTGTGTA
GCCCTCACTCGCCTCGTGCCGCATCACGCCGCCCTGCATTGCAGCACGCG
CTACCCATGGCGCGGCCTTTCGTACAGCTTCGGTTGCACTCCAAGTCGCA
GTGTGCCGTGAACATTGGGCCCACAGGATTGCCCTTCGAGGGAAGATTTG
AGCTGTTTTGTGAGGTGGGTTAGAGAAAACGTAACAACAGCACTTTTGGA
GCACCTCCTGAGGTAGGTCGTCCGAGGCGTTGCTCGTTTTCTCTTGGAGA
AAAACATAACAACACCGTTGGAACACCCCCTGAGCTACGTCGTGAGAGGC
GTAGCTCGAGGCTTATGTTGGGCTCCAAACAATGAGGGTTCACTGATGTT
TGAAGTTGGGACAAGAGCATGAACAGAAAAGACTGTCACAACCTATCGGA
AAAGAAAAGAGTGCATAATCTATCGCAATTCTATGTAATAACACAAAGAT
GCATATCCTTTTCATCGTAGCCGTTGCGGGGCCCGCGTTCGCATGGCGTT
GTGTCGCTTCGTTTTCCCCGCGCACGGGGTCATTTCATTTTTTTCTTTTT
TTTTGCATGTCGATGTGAAATGCCACGCCCACTTTATCCAGTCGCCTACC
TGCCCAACCCCCCTCCTCACAAGCCCCAAGCCCCCCTCACACGTCCCCTA
AACGCCGCCGCGCCGTGTCCTTGCTTGTTGGTCCAGATGTGGAACGAGGT
AGTGTGTACCATCAAGGGGCGCAAGTTGTTTGCCGAGGCGGAGAGCAACG
ATGCCGAGGATGCAAGCGGCGTGGATGATGCCGAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12375:135..2522+

>mRNA_H-canaliculatus_F_contig12375.2022.1 ID=mRNA_H-canaliculatus_F_contig12375.2022.1|Name=mRNA_H-canaliculatus_F_contig12375.2022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12375:135..2522+ (Hapterophycus canaliculatus Oshoro5f female)
GTATTCCGCACGCTGCTGAGCGTGAATTGGATTCGATACAAGGCAGGACG
GAAGTACCCGATCCCCATCAAGTTCATCAACGACGACCTGAACGACAACT
TCCGGAAGGGGGCGTACATACGAAGGTATTCCGCACGCTGCTGAGCGTGA
ATTGGATTCGATACAAGGCAGGACGGAAGTACCCGATCCCCATCAAGTTC
ATCAACGACGACCTGAACGACAACTTCCGGAAGGGGGCGTACATACGAAG
GTTGAGGACGCACCAGAACATTCTCCTCCCCGACGACCCCGAAAAGGTCC
CGAGGTGGCTGTACTTGGATCTCGAGTTCGTTCGCTCCGGAAGCAAGGTT
GAGGACGCACCAGAACATTCTCCTCCCCGACGACCCCGAAAAGGTCCCGA
GGTGGCTGTACTTGGATCTCGAGTTCGTTCGCTCCGGAAGCAAGCTCCGA
GTGAGCGACATCATGATGCCCGAGGGTATCCGACTACACCGAGGCGGCGA
GGCCGCGCTCCGAGTGAGCGACATCATGATGCCCGAGGGTATCCGACTAC
ACCGAGGCGGCGAGGCCGCGATGTGGAACGAGGTAGTGTGTACCATCAAG
GGGCGCAAGTTGTTTGCCGAGGCGGAGAGCAACGATGCCGAGGATGCAAG
CGGCGTGGATGATGCCGAGTAGATGTGGAACGAGGTAGTGTGTACCATCA
AGGGGCGCAAGTTGTTTGCCGAGGCGGAGAGCAACGATGCCGAGGATGCA
AGCGGCGTGGATGATGCCGAGTAG
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