mRNA_H-canaliculatus_F_contig12374.2021.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI) HSP 1 Score: 331 bits (849), Expect = 5.020e-110 Identity = 187/291 (64.26%), Postives = 223/291 (76.63%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGG--VVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SF GLLVV++KRVA SIGLSHAFIFASGALLTA+LLHI+PEA+EGL+ YD+LHDLGLYA + +L GL S++IH L+ESGHSH + +HSH G V GG + + VS DD M + G + P + ++++ AD+ TQPP+PA ST NL++LIA REGRSLLD++GLQPVCWNV+ GDLVHNFADGVTIGAAFL+CSATIGWTVTASAVLHE+PHE+ADFMALLNGGMS+KQAF YNFLSALSAVLGT IIL+LG +LSD VSIV
Sbjct: 5 SFAGLLVVVNKRVAYSIGLSHAFIFASGALLTAALLHIIPEAMEGLDSSYDNLHDLGLYASLTVLSGLFVSIVIHGLMESGHSHSPNE-AHSHGGGEETVRPGGGNGHHARVS-------DDASTMMPLGLAEGDKVSAWPGGNSPQAVQIQ-ADV--TQPPSPAES--STDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIV 282
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.570e-107 Identity = 189/292 (64.73%), Postives = 223/292 (76.37%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTA---GGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SF GLLVV +KRVA SIGLSHAFIFASGALLTA+L+HI+PEA+EGL+ YD+LHDLGLYAG+ +LGGLS SV+IH L+ESGHSH G HSH GG T GG + + VS D M + G + P + ++++ AD+ TQPP+PA ST NL++LIA R GRSLLD++GLQPVCWNV+ GDLVHNFADG+TIGAAFL+CSAT+GWTVTASAVLHE+PHE+ADFMALLNGGMS+KQAF YNFLSALSAVLGT IILALG +LSD VSIV
Sbjct: 203 SFAGLLVVANKRVAYSIGLSHAFIFASGALLTAALVHIIPEAMEGLDSSYDNLHDLGLYAGLTVLGGLSVSVVIHGLMESGHSHSPHEG-HSHG-GGTETVRPGGGHGHHARVS-------DGAGTTMPLGMAEGDKVSAWPGGNSPHAVQIQ-ADV--TQPPSPAES--STDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIV 480
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI) HSP 1 Score: 301 bits (770), Expect = 5.520e-96 Identity = 170/291 (58.42%), Postives = 204/291 (70.10%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSH--GESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SF G++VV K VA +I LSHAF+FASGALLTA+LLHI+PEALEGLEE Y SLHDLGLYAG+A++GG+S +++HALLESGHSH GES A V GG A SA +G + AT PP+P ++ NL++LI+AR+G+SLLD++GL+PVCWNVIAGDLVHNFADGV IGAAFLSCS T+GWTV AS VLHEVPHE+ADFMALLNGGMS+ QAF+YNFLSALSAVLGT IILAL +LS+ ++IV
Sbjct: 197 SFAGIVVVASKHVANNIDLSHAFVFASGALLTAALLHIIPEALEGLEESYGSLHDLGLYAGLAVMGGMSLGIVLHALLESGHSHSPGESXXXXXXA---VEAGGGGAKASAYTGTSE----------------------------------------ATLPPSPVES--NSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIV 442
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI) HSP 1 Score: 251 bits (641), Expect = 2.540e-78 Identity = 144/289 (49.83%), Postives = 175/289 (60.55%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SFTG+L +I+++VA +IGLSH F FASGALLTASLLHIVPE+LEG+ +YD LHD GL+AG+AILGG+ FS+LIHALLESGH AG P L + RSL DL+GL+PVCWNVIAG+LVHNFADGVTIGAAFL+C +++GWT+TAS VLHE+P ELADF+ALL GGMS+KQAFL+NFLSAL+ VLG +IL+L S LSDA VS++
Sbjct: 78 SFTGILTIINQKVANAIGLSHTFTFASGALLTASLLHIVPESLEGIAAEYDHLHDAGLWAGLAILGGIGFSILIHALLESGH-------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXAGTAP-------LALTDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVI 304
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI) HSP 1 Score: 220 bits (561), Expect = 7.130e-65 Identity = 122/289 (42.21%), Postives = 171/289 (59.17%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SF G+ ++I+KR+A + LSHA++FA+GA+LTASL+HIVPE+ E E+ L+DLG++ GV +L G++ SV+I A+ +GHSH G PA V + D G + P T P P NL L+ R+GR+L D +GL+P+CWNVI GD VH+F G TIGAAFLSC +T+GWT+TAS ++HEVP E+ADF+ALLNGGMS+KQA +N +S + A+LG +ILALG ++ Q++I+
Sbjct: 215 SFVGIFLLINKRIANGVDLSHAYMFATGAILTASLIHIVPESFERFEDSELGLYDLGIHTGVTMLAGITASVIIRAVCTAGHSH----------------TGAPATAKVV---------EADGGQSRGP---------------------------TTPTIP-------DNLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAII 444
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.680e-63 Identity = 120/289 (41.52%), Postives = 166/289 (57.44%), Query Frame = 1
Query: 1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
SF G+ ++I KR+A I LSHA++FA+GA+LTA+L+HI+PE+ E E+ LHDLG++ GV +L G++ S++I A+ +GHSH G PA V G DG + T P P NL L+ R+GR+L D +GL+P+CWNVI GD VH+F G TIGAAFLSC +T+GWT+TAS ++HEVP E+ADF+ALLNGGMS+KQA +N S + A+LG +IL LG + Q++I+
Sbjct: 211 SFAGIFLLISKRIANGIDLSHAYMFATGAILTAALIHIIPESFERFEDAELGLHDLGIHTGVTMLAGITASIIIRAVCTAGHSH----------------TGAPATAKVV--------------------------------GADGSQ----SRGPTTPTIPE-------NLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAII 440
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK) HSP 1 Score: 124 bits (310), Expect = 2.300e-28 Identity = 86/279 (30.82%), Postives = 140/279 (50.18%), Query Frame = 1
Query: 43 RSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRS-GLDGLEVE-HADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDL----------RGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSL 843
++I + A F SGALL+A+++H++PE +E D LG AG+ ILGGL FS+++H ++ H+ ++ PG V R+AV+ E G D +++ + P+ ++G + ++AT +C G + R+GRS + L RG++P WN++ GD + N DG+ I AF C +++GW V + + HE+P E+ DF L++ G+S QA L N S + A+ G I+L L SSL
Sbjct: 216 KAIAMQLATAFGSGALLSAAIVHLIPEGYALIESFVDG-EQLGTNAGLTILGGLMFSLILHMAIQHKHAAVDA------EPGCSVKE----ERAAVAPTSTFEASPGGDDVVEMALEAEAVEGPPEAQVHVEGDSCDDECGLAATNEVGDCNDCAEEGGGR----LRQGRSAVKLLAALPRVGPVRGVRPQAWNLVLGDCICNGLDGMVIAVAFAGCDSSMGWIVFGAVMSHEIPQEIGDFFVLIDSGLSFGQALLANLFSGVCAIFGGIIVLLLNSSL 479
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5K199_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K199_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.780e-28 Identity = 79/200 (39.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query: 28 DKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADG 627
+VA +IGLSH F FAS ALLT LLHI+PE+LEG+ K+D LHD GL+AG AIL FS+LIHAL+ESGH + T P G+ + GNL +L++ R+GRSL DL+GLQ VCWNVIAG+LV NFADG
Sbjct: 10 STKVAHAIGLSHTFTFASDALLTTFLLHIIPESLEGIVAKHDHLHDAGLWAGPAILDRTGFSILIHALMESGHXXXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXXXAGTAPLALKGKV-TPGNLWALVSERQGRSLFDLKGLQLVCWNVIAGELVRNFADG 161
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A7S2XX20_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX20_9STRA) HSP 1 Score: 115 bits (287), Expect = 4.170e-26 Identity = 90/254 (35.43%), Postives = 119/254 (46.85%), Query Frame = 1
Query: 79 SGALLTASLLHIVPEA---LEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAG-GPANRSAVS-GVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIIL 825
+GA+L+AS LH++PEA L + E+ D G G IL GL IH + GHSH +V G G A+S P +EE G + G E PK H MSA+Q + L AA + L L CWNV GDLVHNF DGV + AAF CS GW +TA+ HE+P E+AD M LL+ GM V A +N +S+++A+LG ++L
Sbjct: 33 AGAILSASFLHLLPEANIFLSSISEE-----DRGWQGGACILTGLLVGAFIHVIF--GHSHDTVEEIVEERRQSLVGQGAGLEELGAISLQSPSKEEGGGPEPTPVVVQPGDSQSESPKPY-AGSFPRMHLVMSASQ--------------RHLEAAGQ-----TLARLHAHCWNVFFGDLVHNFLDGVLVAAAFSGCSTAKGWAITAAVAAHEIPQEIADVMVLLSAGMPVSGALAFNLVSSMAAILGAVVVL 259
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: M4BCL4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCL4_HYAAE) HSP 1 Score: 103 bits (257), Expect = 2.520e-21 Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 424 SGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGR----SL-LDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILA 828
S ++G +H++ S T AG S GNL L+ R SL ++ R ++P+ + ++ GDL HNF DGV I AFL+C T+G +VT S++LHE+P E ADF+ L+ G + QA L+NFLSAL+A +G A++LA
Sbjct: 294 SPMNGTPAKHSEASET-----AGY--SNGNLPILVGRESTRVSPFSLTVNWRAIKPMAYIILIGDLFHNFVDGVLIATAFLACDDTLGVSVTVSSILHELPQEFADFIILVESGFTPFQAVLFNFLSALTAFIGAAVVLA 426 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12374.2021.1 >prot_H-canaliculatus_F_contig12374.2021.1 ID=prot_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=289bp SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYback to top mRNA from alignment at H-canaliculatus_F_contig12374:596..3405- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12374.2021.1 ID=mRNA_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12374:596..3405- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12374:596..3405- >mRNA_H-canaliculatus_F_contig12374.2021.1 ID=mRNA_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12374:596..3405- (Hapterophycus canaliculatus Oshoro5f female)back to top |