mRNA_H-canaliculatus_F_contig12367.2015.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12367.2015.1
Unique NamemRNA_H-canaliculatus_F_contig12367.2015.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMV 135
            VRKEHF VVG AL+  L L+LQ +FT+EVKQSW AVY L+SNIM+
Sbjct:  630 VRKEHFPVVGEALIATLGLVLQNEFTDEVKQSWAAVYNLLSNIMI 674
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BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Match: A0A6H5K1U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMV 135
            VRKEHF VVG AL+  L L+LQ +FT+EVKQSW AVY ++SNIM+
Sbjct:  641 VRKEHFPVVGEALIATLGLVLQNEFTDEVKQSWAAVYKVLSNIMM 685
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BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Match: W7R3G1_9ALTE (Hemoprotein n=2 Tax=Catenovulum agarivorans TaxID=1172192 RepID=W7R3G1_9ALTE)

HSP 1 Score: 50.4 bits (119), Expect = 2.020e-6
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMV 135
            V+KEH+ VVG AL+  L   L   FTEEVKQ+W  VY L+S++M+
Sbjct:   86 VKKEHYAVVGAALIWTLEQGLGDAFTEEVKQAWVDVYGLLSSVMI 130
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BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Match: A0A1G3E3L9_9GAMM (Hemin receptor n=1 Tax=Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 TaxID=1802009 RepID=A0A1G3E3L9_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 1.120e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMV 135
            V   H+  VG ALL  L   L  DFTEEVK +W  VYT+M+++MV
Sbjct:   86 VEDSHYQTVGAALLKTLGQGLGADFTEEVKNAWTVVYTVMADVMV 130
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BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Match: A0A4Q3BR63_9SPHI (GLOBIN domain-containing protein (Fragment) n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3BR63_9SPHI)

HSP 1 Score: 47.0 bits (110), Expect = 4.460e-5
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMVR 138
            V+ EH+  VG ALL +L   L + +TE VK SW A YTL+SN M++
Sbjct:   81 VQDEHYQTVGAALLWSLEKGLGEHWTEPVKDSWVACYTLLSNAMIQ 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12367.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3H0_ECTSI1.650e-1268.89Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5K1U5_9PHAE1.070e-1166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7R3G1_9ALTE2.020e-653.33Hemoprotein n=2 Tax=Catenovulum agarivorans TaxID=... [more]
A0A1G3E3L9_9GAMM1.120e-551.11Hemin receptor n=1 Tax=Pseudomonadales bacterium R... [more]
A0A4Q3BR63_9SPHI4.460e-550.00GLOBIN domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12367contigH-canaliculatus_F_contig12367:3458..3607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog2880.D7G3H0
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
EggNOG free text desc.positive regulation of GTPase activity
EggNOG OGsKOG3589@1,KOG3589@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.6388488-CDS-H-canaliculatus_F_contig12367:3457..36071622928951.6388488-CDS-H-canaliculatus_F_contig12367:3457..3607Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12367 3458..3607 +
1696845626.8312204-CDS-H-canaliculatus_F_contig12367:3457..36071696845626.8312204-CDS-H-canaliculatus_F_contig12367:3457..3607Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12367 3458..3607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12367.2015.1prot_H-canaliculatus_F_contig12367.2015.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12367 3458..3607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12367.2015.1

>prot_H-canaliculatus_F_contig12367.2015.1 ID=prot_H-canaliculatus_F_contig12367.2015.1|Name=mRNA_H-canaliculatus_F_contig12367.2015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
VRKEHFTVVGHALLGALSLILQKDFTEEVKQSWEAVYTLMSNIMVRRGGQ
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mRNA from alignment at H-canaliculatus_F_contig12367:3458..3607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12367.2015.1 ID=mRNA_H-canaliculatus_F_contig12367.2015.1|Name=mRNA_H-canaliculatus_F_contig12367.2015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12367:3458..3607+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGGAAGGAACATTTTACGGTGGTGGGGCACGCCCTGCTGGGTGCCCT
CAGCCTGATCCTCCAGAAGGACTTCACCGAGGAGGTGAAGCAGTCGTGGG
AGGCGGTCTACACGCTCATGTCTAACATCATGGTGAGAAGAGGCGGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12367:3458..3607+

>mRNA_H-canaliculatus_F_contig12367.2015.1 ID=mRNA_H-canaliculatus_F_contig12367.2015.1|Name=mRNA_H-canaliculatus_F_contig12367.2015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12367:3458..3607+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGGAAGGAACATTTTACGGTGGTGGGGCACGCCCTGCTGGGTGCCCT
CAGCCTGATCCTCCAGAAGGACTTCACCGAGGAGGTGAAGCAGTCGTGGG
AGGCGGTCTACACGCTCATGTCTAACATCATGGTGAGAAGAGGCGGGCAG
GTCCGGAAGGAACATTTTACGGTGGTGGGGCACGCCCTGCTGGGTGCCCT
CAGCCTGATCCTCCAGAAGGACTTCACCGAGGAGGTGAAGCAGTCGTGGG
AGGCGGTCTACACGCTCATGTCTAACATCATGGTGAGAAGAGGCGGGCAG
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