mRNA_H-canaliculatus_F_contig12366.2013.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12366.2013.1
Unique NamemRNA_H-canaliculatus_F_contig12366.2013.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: D8LR76_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR76_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 7.540e-45
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            RCLVTVEMGK LPVGQAVLASGVSFDAPKHIFLMLFILTDM+RPDTFFRPYY+LLPTTLSNMPIFW EEEM+LL+GSYLVTQV
Sbjct:  150 RCLVTVEMGKALPVGQAVLASGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLSNMPIFWTEEEMRLLQGSYLVTQV 232          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: W7THN2_9STRA (Set domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THN2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.440e-32
Identity = 55/83 (66.27%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            RCL+TVEMGK   VG+AVLAS +  DAPKHIFLMLF+LTD + P +FF+PYY++LP++LSNMPIFW +EE+  LKGS+L+TQ+
Sbjct:   69 RCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFWTDEELAYLKGSHLLTQI 151          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A6V1NVS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS5_HETAK)

HSP 1 Score: 124 bits (311), Expect = 8.160e-32
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    4 CLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            CL+TVEMGK   VGQAVLA+ +  DAPKH+FLMLF+L D K PD+FF+PYY+ LP TLSNMPIFW+EEE++ L GSYL TQV
Sbjct:   49 CLITVEMGKQTEVGQAVLAANLDLDAPKHVFLMLFMLVDRKNPDSFFKPYYDTLPPTLSNMPIFWSEEELRWLDGSYLQTQV 130          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A7S2FNW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNW3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.930e-31
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    4 CLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            CL+TVEMGK   +G+AVL S +  DAPKH+FLMLF+L D K P + F+PYY+ LP TLSNMPIFW++EE+ LL+GSYL+ QV
Sbjct:   50 CLITVEMGKATDIGRAVLQSDLDLDAPKHVFLMLFMLIDRKNPTSHFKPYYDTLPPTLSNMPIFWSQEELALLEGSYLLVQV 131          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A7S2WKZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKZ7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.400e-30
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    4 CLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            CL+TVEMGK   VG AVLA+ +  DAPKH+FLMLF+L D KR D+ F+PYY++LP TLSNMPIFW  EE+ LL+GSYL+TQ+
Sbjct:   89 CLITVEMGKATDVGAAVLAANIELDAPKHVFLMLFMLVDRKREDSHFKPYYDILPETLSNMPIFWNSEELALLEGSYLLTQI 170          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A4D9D3E6_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3E6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.190e-30
Identity = 54/83 (65.06%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            RCL+TVEMGK   VG+AVLAS +  DAPKHIFLMLF+LTD + P +FF+PYY++LP++LSNMPIFW +EE+  LKGS+L+ Q+
Sbjct:   69 RCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFWTDEELAYLKGSHLLVQI 151          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: F0YNA7_AURAN (SET domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNA7_AURAN)

HSP 1 Score: 115 bits (288), Expect = 7.720e-29
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            +CL+TVEMGK   VG+AVL + +  DAPKH+FLMLF+L D +   TFF PYY++LP+TLSNMPIFW  +E++ LKGSYL+TQ+
Sbjct:   79 KCLITVEMGKATDVGRAVLEAELELDAPKHVFLMLFVLLDRRDSSTFFAPYYDILPSTLSNMPIFWQPDELEWLKGSYLLTQI 161          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A835ZC89_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC89_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.510e-28
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            +CL+TVEMGK  PVG+AV+A+    DAPKHI+LMLF+LTD  R D+FFRPYY++LP +LSNMP+FW + ++  L+GS++V QV
Sbjct:   87 KCLITVEMGKETPVGRAVVAADPDLDAPKHIYLMLFLLTDRLRADSFFRPYYDMLPPSLSNMPVFWEDAKLAWLRGSFMVRQV 169          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A2D4BYU5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYU5_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 1.040e-27
Identity = 52/85 (61.18%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPD-TFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQVR 252
            +CL+TVEMGK  P+GQ +LA  + F APKHIFLM+F+L DM+  D +F+RPYY+ LP TLSNMPIFW++EE++ LKGSY+V Q++
Sbjct:  554 KCLITVEMGKMTPIGQQLLAHNLEFVAPKHIFLMMFLLHDMEHMDESFYRPYYQTLPKTLSNMPIFWSDEELQWLKGSYIVQQIQ 638          
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Match: A0A8J2SJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJU3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.770e-27
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 RCLVTVEMGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPTTLSNMPIFWAEEEMKLLKGSYLVTQV 249
            +CL+TVEMGK   VG+AVL +G+  DAPKHIFLMLF+L D    D+FFRPYY++LP +LSNMPIFW   E+  L+GSYL+ Q+
Sbjct:   79 KCLITVEMGKATDVGRAVLEAGLELDAPKHIFLMLFLLLDRCNSDSFFRPYYDVLPGSLSNMPIFWKPNELTWLEGSYLLVQI 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12366.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR76_ECTSI7.540e-4592.77SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7THN2_9STRA1.440e-3266.27Set domain containing protein n=1 Tax=Nannochlorop... [more]
A0A6V1NVS5_HETAK8.160e-3269.51Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2FNW3_9STRA3.930e-3163.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WKZ7_9STRA1.400e-3065.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D3E6_9STRA2.190e-3065.06SET domain-containing protein n=1 Tax=Nannochlorop... [more]
F0YNA7_AURAN7.720e-2961.45SET domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A835ZC89_9STRA3.510e-2860.24SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2D4BYU5_PYTIN1.040e-2761.18Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8J2SJU3_9STRA2.770e-2761.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12366contigH-canaliculatus_F_contig12366:2895..3146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue5.7e-33
Seed eggNOG ortholog2880.D8LR76
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-06_004080.1
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.5281837-UTR-H-canaliculatus_F_contig12366:2894..29151622928951.5281837-UTR-H-canaliculatus_F_contig12366:2894..2915Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12366 2895..2915 +
1696845626.7715905-UTR-H-canaliculatus_F_contig12366:2894..29151696845626.7715905-UTR-H-canaliculatus_F_contig12366:2894..2915Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12366 2895..2915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.5487087-CDS-H-canaliculatus_F_contig12366:2915..31461622928951.5487087-CDS-H-canaliculatus_F_contig12366:2915..3146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12366 2916..3146 +
1696845626.7828696-CDS-H-canaliculatus_F_contig12366:2915..31461696845626.7828696-CDS-H-canaliculatus_F_contig12366:2915..3146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12366 2916..3146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12366.2013.1prot_H-canaliculatus_F_contig12366.2013.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12366 2916..3146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12366.2013.1

>prot_H-canaliculatus_F_contig12366.2013.1 ID=prot_H-canaliculatus_F_contig12366.2013.1|Name=mRNA_H-canaliculatus_F_contig12366.2013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=77bp
MGKGLPVGQAVLASGVSFDAPKHIFLMLFILTDMKRPDTFFRPYYELLPT
TLSNMPIFWAEEEMKLLKGSYLVTQVR
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mRNA from alignment at H-canaliculatus_F_contig12366:2895..3146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12366.2013.1 ID=mRNA_H-canaliculatus_F_contig12366.2013.1|Name=mRNA_H-canaliculatus_F_contig12366.2013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12366:2895..3146+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTGTTTGGTGACGGTTGAGATGGGCAAGGGCCTGCCCGTAGGCCAGGC CGTCCTCGCGTCGGGCGTGTCGTTCGACGCGCCCAAGCACATCTTCCTCA TGCTCTTCATCCTCACCGACATGAAGAGACCGGACACCTTCTTCCGCCCC TACTACGAGCTCCTGCCCACCACCCTGAGCAACATGCCCATCTTCTGGGC CGAAGAGGAGATGAAGCTGCTCAAGGGGTCTTACCTCGTCACACAGGTAA GG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12366:2895..3146+

>mRNA_H-canaliculatus_F_contig12366.2013.1 ID=mRNA_H-canaliculatus_F_contig12366.2013.1|Name=mRNA_H-canaliculatus_F_contig12366.2013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12366:2895..3146+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCAAGGGCCTGCCCGTAGGCCAGGCCGTCCTCGCGTCGGGCGTGTC
GTTCGACGCGCCCAAGCACATCTTCCTCATGCTCTTCATCCTCACCGACA
TGAAGAGACCGGACACCTTCTTCCGCCCCTACTACGAGCTCCTGCCCACC
ACCCTGAGCAACATGCCCATCTTCTGGGCCGAAGAGGAGATGAAGCTGCT
CAAGGGGTCTTACCTCGTCACACAGGTAAGGATGGGCAAGGGCCTGCCCG
TAGGCCAGGCCGTCCTCGCGTCGGGCGTGTCGTTCGACGCGCCCAAGCAC
ATCTTCCTCATGCTCTTCATCCTCACCGACATGAAGAGACCGGACACCTT
CTTCCGCCCCTACTACGAGCTCCTGCCCACCACCCTGAGCAACATGCCCA
TCTTCTGGGCCGAAGAGGAGATGAAGCTGCTCAAGGGGTCTTACCTCGTC
ACACAGGTAAGG
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