mRNA_H-canaliculatus_F_contig12365.2012.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12365.2012.1
Unique NamemRNA_H-canaliculatus_F_contig12365.2012.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 2.480e-73
Identity = 119/267 (44.57%), Postives = 164/267 (61.42%), Query Frame = 1 
Query:  151 QLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCVT-VPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPV 948
            Q + + E++  + A   H+ GKV  +  FP+  GWA PPL S QQ + +P + PFYLKKVFVW PE+I+  +  +PCP CG +   DGW+    RRVFL+ D+ YLIG+RY C  C+D N      K  + R  A+F AWD  V++R+D +VS  FPF+LTRK+ ++++++ RLADDL+ GKGF+ATSK ++ AY  TY   + SYVSL NR  S +     +       +IP F    D  GFN   PS  YL  +WHKWF + PV
Sbjct:    5 QNRSIYEIKGNIKASRKHENGKVKRISEFPYRDGWASPPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDCIPCPHCGERGQPDGWNT-DARRVFLEQDVCYLIGYRYYCKRCTDANAM----KNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHKWFDEMPV 266
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.340e-72
Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 1 
Query:  475 RYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKT-VVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEVRRF 966
            RYTCS C   NK  G   GDK RRK SFNAWD+GV++R+DSYVSNAFPF+LTRKSG+A T VVARLADDL+NGKGFSATSKF REAYMN+YM  +HSYVSLVNRC+ SIG   R AA EG  +IP FGGF DR+GFNGAWPSD YLR VWHKWFY+T VIEVRRF
Sbjct:  271 RYTCSGCLKHNKKKG--TGDKDRRKGSFNAWDQGVLARMDSYVSNAFPFVLTRKSGIATTAVVARLADDLLNGKGFSATSKFKREAYMNSYMMQYHSYVSLVNRCQRSIGGHFRAAAEEGTPDIPIFGGFGDREGFNGAWPSDQYLRAVWHKWFYETVVIEVRRF 433
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.520e-68
Identity = 122/272 (44.85%), Postives = 167/272 (61.40%), Query Frame = 1 
Query:  148 AQLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCV-TVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPA-FGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            AQ ++  EV+ K+   I H+ G V   G FPFD    RP  A+ Q    +P L+ FY K V VW PEF+FP +  VPCP CG K + DGW+ + PRRVF+D D+ Y++GFRY C+ C+++NK     K +  +RK SFNAWD G + RL  Y+S  FPF+LT++SG+   +V RLADDL++GKGFSA +K +R+A+   +M     Y SLVN  R+S G    +      ++ P  FG FDD   + GA PS+ YLR V   +F   PV+EV
Sbjct:   44 AQERFFEEVKDKIDQSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKG----KQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSG----IFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEV 305
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 7.870e-68
Identity = 120/272 (44.12%), Postives = 167/272 (61.40%), Query Frame = 1 
Query:  148 AQLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCV-TVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPA-FGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            AQ ++  EV+ K+   I H+ G V   G FPFD    RP  A+ Q    +P L+ FY K V VW PEF+FP +  VPCP CG K + DGW+ K PRRVF++ D+ Y++GFRY C+ C+++NK     K +  +RK SFNAW  G + RL  Y+S  FPF+LT++SG+   +V RLADDL++GKGFSA +K + +A+   +M     Y SLV+  R+S G    +      ++IP  FG FDD   + GA PS+ YLR VW  +F   PV+E+
Sbjct:   44 AQERFFEEVKDKIDRSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKG----KQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTSSG----IFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEM 305
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 4.150e-64
Identity = 109/242 (45.04%), Postives = 152/242 (62.81%), Query Frame = 1 
Query:  235 FPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCVT-VPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            FP++GGWA P L S  + + +P L PFYLKKVFVW PE+++  +  +PCP C +++  DGW+  +PRRVFL+DD+ YLIG+RY C  C++ NK     + +  R   +FNAWD GV++ +D YVS  FPF+LT+K+ ++K+VV RLADDL+ G GF+A SK +   Y   Y     SYVSL NRC   +     +        IP F    D  GF+ + PS  YL  +WHK FY+TPV++ 
Sbjct:    7 FPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEIEYIPCPHCNKRAQPDGWNT-EPRRVFLEDDVCYLIGYRYLCKGCTEANKG----RPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRC---VSRHKGMWPNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQA 240
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5KNK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK9_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.270e-62
Identity = 104/223 (46.64%), Postives = 144/223 (64.57%), Query Frame = 1 
Query:  295 VPDLNPFYLKKVFVWAPEFIFPCV-TVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPA-FGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            +P L+ FY K V VW PEF+FP +  VPCP CG K + DGW+ K PRRVF++ D+ Y++GFRY C+ C+++N+     K +  +RK SFNAWD G + RL  Y+S  F F+LT++SG+   +V RLADDL++GKGFSA +K +R+A+   +M     Y SLVN  R+S G    +      ++IP  FG FDD   + GA PS+ YLR VW  +F   PV+EV
Sbjct:   17 LPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNEG----KQEAEKRKTSFNAWDAGCLRRLPEYMSKEFHFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSG----IFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEV 231
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.770e-57
Identity = 117/299 (39.13%), Postives = 165/299 (55.18%), Query Frame = 1 
Query:  142 SKAQLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCV-TVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMN--------------------------TYMTAHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            S AQ ++  +V+ K+   I H+ G V   G FPFD    RP  A+ Q    +P+++ FY K V VW PEF+FP +  VPCP CG K + DGW+ K PRRVF++ D+ Y++GFRY C+ C+ +N+     K +  +RK SFNAWD G + RL  Y+S  FP +LT++SG+   +V RLADDL++GKGFSA +K + +  ++                           +M     Y SLVN  R+S G      +   A     FG FDD   + GA PS+ YLR VW  ++   PV+EV
Sbjct:   42 SSAQERFFQDVKVKIDQSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPGLPEVDWFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYIMGFRYKCAKCAKFNQG----KEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTSSGI---FRSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEV 331
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 7.230e-56
Identity = 105/275 (38.18%), Postives = 157/275 (57.09%), Query Frame = 1 
Query:  151 QLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCVTVPCPTCGRKSS--SDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSL----VNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSDAYLRGVWHKWFYDTPVIEV 957
            Q  ++ +++  + A   H+ G V   G FP++GGWA PPL S       P L PFYLKKV VW PE+I+  V +PCP CG ++    DGW+  +PRRVFL+DD+ Y+IGFRY C  C+  NK +   + +  R   +FNAWD  V++R+D +VS  FPF+LT+K+ + +T                  SK + +AY + Y +   SYVSL    +++ R   G+Q          ++P F G  D  G+N + PS  +L  +W+KWFY+TPV+++
Sbjct:  127 QSAFIEQMKDNLRACRKHENGAVKRKGAFPYNGGWANPPLPSLYTGLGAPPLEPFYLKKVLVWVPEYIWEDVHIPCPHCGARAQPDGDGWNT-EPRRVFLEDDVCYMIGFRYECKECTRANKED---RSEDERTTQTFNAWDPAVLARMDDFVSEQFPFVLTKKAAINRTN--------------HTVSKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNP-------DVPKFAGTGDPSGYNSSSPSAHHLADIWNKWFYETPVVQL 376
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BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 9.080e-52
Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:  142 SKAQLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFPCV-TVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYM 747
            S AQ ++  EV+ K+   I H+ G V   G FPFD    RP  A+ Q    +P L+ FY K V VW PEF+FP +  VPCP CG K + DGW+ K PRRVF++ D+ Y++GFRY C+ C+++NK     K +  +RK SFNAWD G + RL  Y+S  FPF+LT++SG+    V RL D L++GKGFS  +K +R+A+   +M
Sbjct:  106 SSAQERFFEEVKDKIDRSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKG----KQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICKVDRLTDHLVHGKGFSGAAKDIRQAHTTKFM 302
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Match: A0A6H5L8D0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D0_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 9.050e-46
Identity = 97/246 (39.43%), Postives = 132/246 (53.66%), Query Frame = 1 
Query:   79 ALPAASGSDSEEEQDDFVFRLSKAQLQWVAEVRAKVTAGIVHKAGKVVEVGG----FPFDGGWARPPLASRQQLSAVPDLNPFYLKKVFVWAPEFIFP---CVTVPCPTCGRKSSSDGWSAKQPRRVFLDDDIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSYVSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMTAHHSYVSLVNRCRSS 795
            A P   G   E+ Q     RLS A       V+  + A I+H +G V    G     P+      P  A+ Q  S +P L+PF LK +F W PE++FP      +PCP CG++ S DGW+ K PRRVF+++D+GY+IGFR                          FNAWD G + RL  YVS  FPF+LT +SG+   +V RLADDL++GKGFSA +K++R+A+   +M     YVSL +  RSS
Sbjct:  406 APPPVRGGGVEDSQ-----RLSPAMRDHFRTVKKNIDANIIHHSGGVAAPRGGSGKVPYSSPLIFPKCATMQNTSGLPKLSPFLLKPLFAWIPEYLFPELALARIPCPRCGKRGSPDGWNPKGPRRVFMEEDVGYIIGFR--------------------------FNAWDVGCLDRLPDYVSKEFPFILTHRSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMVNQLKYVSLADARRSS 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12365.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSM2_9PHAE2.480e-7344.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M0_9PHAE3.340e-7274.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE1.520e-6844.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE7.870e-6844.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FIV2_ECTSI4.150e-6445.043'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KNK9_9PHAE1.270e-6246.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE3.770e-5739.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4D4_9PHAE7.230e-5638.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN0_9PHAE9.080e-5245.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D0_9PHAE9.050e-4639.43Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12365contigH-canaliculatus_F_contig12365:1001..2420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue6.7e-59
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size975
Cds size975
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12365.2012.1prot_H-canaliculatus_F_contig12365.2012.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12365 1001..2420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.466774-CDS-H-canaliculatus_F_contig12365:1000..12921622928951.466774-CDS-H-canaliculatus_F_contig12365:1000..1292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1001..1292 +
1696845626.7410703-CDS-H-canaliculatus_F_contig12365:1000..12921696845626.7410703-CDS-H-canaliculatus_F_contig12365:1000..1292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1001..1292 +
1622928951.4766285-CDS-H-canaliculatus_F_contig12365:1512..16961622928951.4766285-CDS-H-canaliculatus_F_contig12365:1512..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1513..1696 +
1696845626.7527728-CDS-H-canaliculatus_F_contig12365:1512..16961696845626.7527728-CDS-H-canaliculatus_F_contig12365:1512..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1513..1696 +
1622928951.4864438-CDS-H-canaliculatus_F_contig12365:1921..24201622928951.4864438-CDS-H-canaliculatus_F_contig12365:1921..2420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1922..2420 +
1696845626.7617202-CDS-H-canaliculatus_F_contig12365:1921..24201696845626.7617202-CDS-H-canaliculatus_F_contig12365:1921..2420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12365 1922..2420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12365.2012.1

>prot_H-canaliculatus_F_contig12365.2012.1 ID=prot_H-canaliculatus_F_contig12365.2012.1|Name=mRNA_H-canaliculatus_F_contig12365.2012.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=325bp
GPGGGNHGKRRKTGSGSSGSNGASGSALPAASGSDSEEEQDDFVFRLSKA
QLQWVAEVRAKVTAGIVHKAGKVVEVGGFPFDGGWARPPLASRQQLSAVP
DLNPFYLKKVFVWAPEFIFPCVTVPCPTCGRKSSSDGWSAKQPRRVFLDD
DIGYLIGFRYTCSNCSDWNKSNGFKKGDKSRRKASFNAWDRGVISRLDSY
VSNAFPFMLTRKSGVAKTVVARLADDLINGKGFSATSKFMREAYMNTYMT
AHHSYVSLVNRCRSSIGEQLRVAAGEGASEIPAFGGFDDRQGFNGAWPSD
AYLRGVWHKWFYDTPVIEVRRFER*
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mRNA from alignment at H-canaliculatus_F_contig12365:1001..2420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12365.2012.1 ID=mRNA_H-canaliculatus_F_contig12365.2012.1|Name=mRNA_H-canaliculatus_F_contig12365.2012.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12365:1001..2420+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCCCGGCGGCGGGAACCACGGCAAGCGGCGCAAAACCGGCAGCGGCAG
CAGCGGTAGCAACGGCGCCAGCGGCAGTGCTCTGCCAGCAGCGTCTGGGT
CTGACAGCGAAGAGGAACAGGATGATTTCGTATTCCGTTTGTCTAAAGCA
CAGCTGCAGTGGGTCGCGGAAGTGAGGGCGAAGGTGACCGCTGGAATCGT
CCATAAAGCCGGGAAGGTGGTGGAGGTCGGTGGCTTCCCCTTTGATGGGG
GATGGGCAAGACCTCCGTTGGCTTCGAGGCAGCAGCTTTCAGGTAAGTAA
TAGCGTATTCCGTTTGAGCTTAACGCTTCTCGGCGACCGTTCGTGTGCGT
GTGTTGCGAAAGAGGTACAGTACTTCGACAGAAGGAAAACTGCTGCGCGA
TCCTGTGCTCTTGTGCCATTTGAAGGGTGATCCGCGGCGTTTGTGCATTT
GTTCCAAACTAGTAGGCATCGCTGACCAACGCTCGCGTACGCGTTCCTTT
CTCCCTTGACAGCCGTGCCGGACTTGAATCCTTTCTACCTGAAAAAGGTT
TTCGTGTGGGCGCCGGAGTTCATTTTTCCATGCGTTACCGTCCCTTGCCC
AACTTGTGGCCGAAAGTCAAGCTCAGATGGTTGGAGCGCGAAGCAACCCC
GGCGCGTGTTTCTCGACGACGACATCGGGTACCTCATCGGGTTTAGGTGC
GCACGTGTTGTCCACGTCGAAGAGACTGGTAGAGTTTGTGGGATGCGCCA
CATTTTTGTTCGGAGGCTTGCCGGTATGTTGCGCACACCCTTTGAGTACC
ACCATCAACGCCCTAAAGTTGAAGGGAATACGTGTGGCAATTCGCACCTT
ACCTCGCCGCTTTGCCCCCCCACTACGACGTGACTTACCTCCAATCTCAA
CATTTTGTCTTCGCCCGGTAGGTACACTTGCAGCAACTGTTCTGACTGGA
ATAAGAGCAACGGGTTCAAGAAAGGCGATAAAAGTCGCCGGAAAGCGTCT
TTCAACGCGTGGGACAGGGGTGTAATCTCTCGCCTGGATTCCTACGTATC
CAACGCGTTTCCGTTCATGTTGACCCGGAAGAGCGGGGTAGCGAAAACTG
TCGTGGCGCGACTAGCTGACGACTTGATCAATGGCAAAGGCTTTTCGGCG
ACTTCGAAGTTTATGCGTGAGGCGTACATGAATACGTACATGACAGCGCA
CCACAGCTACGTATCTCTAGTCAATCGCTGCCGGTCCAGCATTGGCGAGC
AGCTCAGAGTTGCCGCCGGGGAGGGGGCTTCCGAGATCCCCGCTTTCGGT
GGCTTCGACGACAGGCAAGGCTTTAATGGCGCGTGGCCGTCGGATGCATA
TCTTCGAGGAGTTTGGCACAAGTGGTTCTACGATACGCCCGTGATTGAGG
TACGCCGCTTCGAAAGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12365:1001..2420+

>mRNA_H-canaliculatus_F_contig12365.2012.1 ID=mRNA_H-canaliculatus_F_contig12365.2012.1|Name=mRNA_H-canaliculatus_F_contig12365.2012.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1950bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12365:1001..2420+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCCCGGCGGCGGGAACCACGGCAAGCGGCGCAAAACCGGCAGCGGCAG
CAGCGGTAGCAACGGCGCCAGCGGCAGTGCTCTGCCAGCAGCGTCTGGGT
CTGACAGCGAAGAGGAACAGGATGATTTCGTATTCCGTTTGTCTAAAGCA
CAGCTGCAGTGGGTCGCGGAAGTGAGGGCGAAGGTGACCGCTGGAATCGT
CCATAAAGCCGGGAAGGTGGTGGAGGTCGGTGGCTTCCCCTTTGATGGGG
GATGGGCAAGACCTCCGTTGGCTTCGAGGCAGCAGCTTTCAGGGCCCCGG
CGGCGGGAACCACGGCAAGCGGCGCAAAACCGGCAGCGGCAGCAGCGGTA
GCAACGGCGCCAGCGGCAGTGCTCTGCCAGCAGCGTCTGGGTCTGACAGC
GAAGAGGAACAGGATGATTTCGTATTCCGTTTGTCTAAAGCACAGCTGCA
GTGGGTCGCGGAAGTGAGGGCGAAGGTGACCGCTGGAATCGTCCATAAAG
CCGGGAAGGTGGTGGAGGTCGGTGGCTTCCCCTTTGATGGGGGATGGGCA
AGACCTCCGTTGGCTTCGAGGCAGCAGCTTTCAGCCGTGCCGGACTTGAA
TCCTTTCTACCTGAAAAAGGTTTTCGTGTGGGCGCCGGAGTTCATTTTTC
CATGCGTTACCGTCCCTTGCCCAACTTGTGGCCGAAAGTCAAGCTCAGAT
GGTTGGAGCGCGAAGCAACCCCGGCGCGTGTTTCTCGACGACGACATCGG
GTACCTCATCGGGTTTAGCCGTGCCGGACTTGAATCCTTTCTACCTGAAA
AAGGTTTTCGTGTGGGCGCCGGAGTTCATTTTTCCATGCGTTACCGTCCC
TTGCCCAACTTGTGGCCGAAAGTCAAGCTCAGATGGTTGGAGCGCGAAGC
AACCCCGGCGCGTGTTTCTCGACGACGACATCGGGTACCTCATCGGGTTT
AGGTACACTTGCAGCAACTGTTCTGACTGGAATAAGAGCAACGGGTTCAA
GAAAGGCGATAAAAGTCGCCGGAAAGCGTCTTTCAACGCGTGGGACAGGG
GTGTAATCTCTCGCCTGGATTCCTACGTATCCAACGCGTTTCCGTTCATG
TTGACCCGGAAGAGCGGGGTAGCGAAAACTGTCGTGGCGCGACTAGCTGA
CGACTTGATCAATGGCAAAGGCTTTTCGGCGACTTCGAAGTTTATGCGTG
AGGCGTACATGAATACGTACATGACAGCGCACCACAGCTACGTATCTCTA
GTCAATCGCTGCCGGTCCAGCATTGGCGAGCAGCTCAGAGTTGCCGCCGG
GGAGGGGGCTTCCGAGATCCCCGCTTTCGGTGGCTTCGACGACAGGCAAG
GCTTTAATGGCGCGTGGCCGTCGGATGCATATCTTCGAGGAGTTTGGCAC
AAGTGGTTCTACGATACGCCCGTGATTGAGGTACGCCGCTTCGAAAGATA
GGTACACTTGCAGCAACTGTTCTGACTGGAATAAGAGCAACGGGTTCAAG
AAAGGCGATAAAAGTCGCCGGAAAGCGTCTTTCAACGCGTGGGACAGGGG
TGTAATCTCTCGCCTGGATTCCTACGTATCCAACGCGTTTCCGTTCATGT
TGACCCGGAAGAGCGGGGTAGCGAAAACTGTCGTGGCGCGACTAGCTGAC
GACTTGATCAATGGCAAAGGCTTTTCGGCGACTTCGAAGTTTATGCGTGA
GGCGTACATGAATACGTACATGACAGCGCACCACAGCTACGTATCTCTAG
TCAATCGCTGCCGGTCCAGCATTGGCGAGCAGCTCAGAGTTGCCGCCGGG
GAGGGGGCTTCCGAGATCCCCGCTTTCGGTGGCTTCGACGACAGGCAAGG
CTTTAATGGCGCGTGGCCGTCGGATGCATATCTTCGAGGAGTTTGGCACA
AGTGGTTCTACGATACGCCCGTGATTGAGGTACGCCGCTTCGAAAGATAG
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