mRNA_H-canaliculatus_F_contig12364.2011.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12364.2011.1
Unique NamemRNA_H-canaliculatus_F_contig12364.2011.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.200e-52
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    1 INWRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
            INWRFVERTGRRTGP GSFLRVSIGGREVPTYIVSRH SNWGFLLESCWTVYTSWEMPPR+GP CD+SLLDD+LTVTMDDQWEE
Sbjct:  171 INWRFVERTGRRTGPTGSFLRVSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 254          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.380e-51
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 INWRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
            I+WRFV RTGRRTGP GSFLRVSIGGREVPTYIVSRH SNWGFLLESCWTVYTSWEMPPR+GP CD+SLLDD+LTVTMDDQWEE
Sbjct:  231 ISWRFVGRTGRRTGPTGSFLRVSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 314          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A061S4A8_9CHLO (F-box family protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S4A8_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 3.320e-22
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    7 WRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE-VC 258
            WR+V  +G R GP+GSFLR S  GRE PT+ VSRHP+NWG++L++CW+V  S+  PP   PG D +L D+ L +  +DQ++E VC
Sbjct:  158 WRWVSGSGGRVGPRGSFLRFSSQGREFPTHFVSRHPANWGWILQNCWSVTMSFPPPP---PGEDPALDDEGLAIGFEDQYDEAVC 239          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A7S0MIA4_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIA4_9CRYP)

HSP 1 Score: 90.9 bits (224), Expect = 1.770e-20
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    7 WRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQ-WEE 252
            WRFV+ +G+    +GSF+RVS+  R VPTY+VSRH SNWGF+L++CW VY S+ MPP    G + SL D  L   MDD+ W E
Sbjct:  156 WRFVDNSGKTCQTRGSFIRVSVNDRSVPTYMVSRH-SNWGFILQNCWVVYFSFPMPPI---GAELSLDDRALDELMDDERWGE 234          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A7S0T873_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T873_9RHOD)

HSP 1 Score: 83.6 bits (205), Expect = 1.570e-17
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 INWRFVERT-GRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
              W FV+   GR   P GSF+RV+    + P Y+VSRH  NWGF+++SCW V TS+EMPPR G   D  L D+ L+VT++ Q  E
Sbjct:   67 FRWSFVQTACGRTDAPLGSFVRVN----QFPAYVVSRHERNWGFIMQSCWVVLTSFEMPPRGG---DELLEDEALSVTVEYQASE 144          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A5J4YMR8_PORPP (F-box domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMR8_PORPP)

HSP 1 Score: 83.6 bits (205), Expect = 2.440e-17
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 INWRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
              WRFVE +      KGSF+RV+    E P YIVSRHP NWGF+L+SCW ++TS+ MP R   G D  L D+ LTVT++ Q +E
Sbjct:  177 FRWRFVESSCGMVRRKGSFIRVN----EFPCYIVSRHP-NWGFILQSCWVLHTSFPMPHR---GTDAFLEDENLTVTVEQQKDE 252          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A0M0J8D1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8D1_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 6.200e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 INWRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
            + W++ +  G   G   S L + + GR+VPTY VSRH SNWGFL++SCW +YTS+ MP R   G D SL D+ L +T++ Q  E
Sbjct:  170 LRWQWAKGRGEDVGGDRSRLELYVDGRKVPTYHVSRH-SNWGFLMQSCWVLYTSFPMPVR---GTDPSLDDEALEITIERQSRE 249          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A7S3JQG3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQG3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.390e-15
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 INWRFVERTGRR---TGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEE 252
            + WR+ +  GRR   T P  S +R  + G++VPTYI+SRHP + GF+++SCW +YT++ MPP+   G D  L DD L V   DQ  E
Sbjct:  177 VEWRWGDGDGRRASGTWPN-SKIRARVDGQDVPTYIISRHPKHKGFIMQSCWVLYTAFPMPPK---GTDPYLEDDALQVGWVDQARE 259          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: A0A7S4E5Q9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5Q9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.160e-15
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 INWRFVE-RTGRRT-----GPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTVYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEEV 255
            + WR+   R  RR      G  GS +RV + GR+VPT  V+RHP + GF++ESCW +YT++ MP    PG  + L DD+L VT++DQ +EV
Sbjct:  132 VKWRWGHARKARRQPGVAGGESGSSVRVVVDGRDVPTLKVARHPVHKGFMMESCWALYTAFPMP---APG--QGLDDDDLHVTVEDQVDEV 217          
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Match: B7GD95_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD95_PHATC)

HSP 1 Score: 76.6 bits (187), Expect = 1.010e-14
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 INWRFVERT-GRRTGPKGSFLRVSIGGREVPTYIVSRHPS-NWGFLLESCWTVYTSWEMPPR 180
            + WRF+ R       P GS+LR ++GGR+VPTY++ R P+ NWGF++ESCW +Y S+E+PP+
Sbjct:  243 MTWRFLSRPMDLPPRPNGSYLRFNVGGRDVPTYVIRRSPTGNWGFVMESCWGLYGSFELPPQ 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12364.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LH86_9PHAE1.200e-5292.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKJ8_ECTSI1.380e-5190.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A061S4A8_9CHLO3.320e-2251.76F-box family protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0MIA4_9CRYP1.770e-2053.01Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0T873_9RHOD1.570e-1748.24Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A5J4YMR8_PORPP2.440e-1751.19F-box domain-containing protein n=1 Tax=Porphyridi... [more]
A0A0M0J8D1_9EUKA6.200e-1646.43Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S3JQG3_9STRA3.390e-1544.83Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4E5Q9_9STRA7.160e-1545.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B7GD95_PHATC1.010e-1450.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12364contigH-canaliculatus_F_contig12364:2937..3532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog35128.Thaps269495
EggNOG free text desc.A Receptor for Ubiquitination Targets
EggNOG OGs2CNXT@1,2QYMI@2759,2XGEQ@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-16_003220.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.410066-CDS-H-canaliculatus_F_contig12364:2936..31261622928951.410066-CDS-H-canaliculatus_F_contig12364:2936..3126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12364 2937..3126 -
1696845626.7175777-CDS-H-canaliculatus_F_contig12364:2936..31261696845626.7175777-CDS-H-canaliculatus_F_contig12364:2936..3126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12364 2937..3126 -
1622928951.4252245-CDS-H-canaliculatus_F_contig12364:3464..35321622928951.4252245-CDS-H-canaliculatus_F_contig12364:3464..3532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12364 3465..3532 -
1696845626.7291696-CDS-H-canaliculatus_F_contig12364:3464..35321696845626.7291696-CDS-H-canaliculatus_F_contig12364:3464..3532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12364 3465..3532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12364.2011.1prot_H-canaliculatus_F_contig12364.2011.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12364 2937..3532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12364.2011.1

>prot_H-canaliculatus_F_contig12364.2011.1 ID=prot_H-canaliculatus_F_contig12364.2011.1|Name=mRNA_H-canaliculatus_F_contig12364.2011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
INWRFVERTGRRTGPKGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWT
VYTSWEMPPRDGPGCDRSLLDDELTVTMDDQWEEVC
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mRNA from alignment at H-canaliculatus_F_contig12364:2937..3532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12364.2011.1 ID=mRNA_H-canaliculatus_F_contig12364.2011.1|Name=mRNA_H-canaliculatus_F_contig12364.2011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12364:2937..3532- (Hapterophycus canaliculatus Oshoro5f female)
ATCAACTGGCGGTTCGTGGAACGAACCGGCAGGAGAACCGGTCCAAAGGG GTCTTTCCTCCGCGTCAGGTGACGTGACGATTGCAAGCTGCCCGTCGATA TCTTTCTCCACGCCCTCGTCCGGCCTTCGTCTGCCCTAGAAGACGCGTTG TTGCTGTTTTTTCTTCGCCGATACCAGCCGCGCGCCCCGCACGTTTGCGT CCATTAACACAAGCCCGGCCGGGGTCTGCCTAACTGAAAGCACGTGCATT GTTTGTTCCTGCAACATGGCACAATTCGAGGCCAACGATTCGAAGCGTTT TCGGACAGATTGACAAAATTGTTACCCCCTCCCACCTGCCCTTGATGCCG CTGACCTTGTCCTCCTCTGCCGCACATCCTTAAAATCCTGGGAATTGTGC CGAAAGCATCGGAGGGCGAGAGGTCCCGACGTACATCGTGTCTCGCCACC CTTCCAACTGGGGTTTCCTCCTGGAAAGCTGCTGGACCGTGTACACCAGC TGGGAGATGCCCCCCCGCGACGGGCCGGGCTGCGACCGGTCGCTGCTGGA CGACGAGCTTACGGTCACGATGGACGACCAGTGGGAGGAGGTGTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12364:2937..3532-

>mRNA_H-canaliculatus_F_contig12364.2011.1 ID=mRNA_H-canaliculatus_F_contig12364.2011.1|Name=mRNA_H-canaliculatus_F_contig12364.2011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12364:2937..3532- (Hapterophycus canaliculatus Oshoro5f female)
ATCAACTGGCGGTTCGTGGAACGAACCGGCAGGAGAACCGGTCCAAAGGG
GTCTTTCCTCCGCGTCAGATCAACTGGCGGTTCGTGGAACGAACCGGCAG
GAGAACCGGTCCAAAGGGGTCTTTCCTCCGCGTCAGCATCGGAGGGCGAG
AGGTCCCGACGTACATCGTGTCTCGCCACCCTTCCAACTGGGGTTTCCTC
CTGGAAAGCTGCTGGACCGTGTACACCAGCTGGGAGATGCCCCCCCGCGA
CGGGCCGGGCTGCGACCGGTCGCTGCTGGACGACGAGCTTACGGTCACGA
TGGACGACCAGTGGGAGGAGGTGTGTCATCGGAGGGCGAGAGGTCCCGAC
GTACATCGTGTCTCGCCACCCTTCCAACTGGGGTTTCCTCCTGGAAAGCT
GCTGGACCGTGTACACCAGCTGGGAGATGCCCCCCCGCGACGGGCCGGGC
TGCGACCGGTCGCTGCTGGACGACGAGCTTACGGTCACGATGGACGACCA
GTGGGAGGAGGTGTGT
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