mRNA_H-canaliculatus_F_contig12362.2010.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12362.2010.1
Unique NamemRNA_H-canaliculatus_F_contig12362.2010.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12362.2010.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 9.330e-54
Identity = 95/117 (81.20%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:  436 QGMHAVVTQFLNLVTGEHVRSDLFWRDHVTTGICQRFGTVALTDSERAGLWTVCSDRPDLLLTILKELVKVTGVRFKESVNRRLRSKSARSSIVGFKFHLTDIRDIEAVVTPMAIYQ 786
            +GMH +VTQFLNLVTG H RS LFWR++VTTG+CQRFGTVALT+SERAGLWTVCSDRP++LLTI+KELVKVTGVRFKESVN++LRS+ A+S +VGF+FHL DIRDIEAVVTPMAIYQ
Sbjct:  341 RGMHLLVTQFLNLVTGHHERSHLFWRENVTTGVCQRFGTVALTESERAGLWTVCSDRPEILLTIVKELVKVTGVRFKESVNQKLRSRKAKSVVVGFEFHLGDIRDIEAVVTPMAIYQ 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12362.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9G7_ECTSI9.330e-5481.20Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12362contigH-canaliculatus_F_contig12362:15..3316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.3e-49
Seed eggNOG ortholog2880.D7G9G7
EggNOG free text desc.Clustered mitochondria
EggNOG OGs2DZMV@1,2S753@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1847
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12362.2010.1prot_H-canaliculatus_F_contig12362.2010.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12362 1073..2875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.3281293-UTR-H-canaliculatus_F_contig12362:14..10721622928951.3281293-UTR-H-canaliculatus_F_contig12362:14..1072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12362 15..1072 -
1696845626.658909-UTR-H-canaliculatus_F_contig12362:14..10721696845626.658909-UTR-H-canaliculatus_F_contig12362:14..1072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12362 15..1072 -
1622928951.3705835-UTR-H-canaliculatus_F_contig12362:2875..33161622928951.3705835-UTR-H-canaliculatus_F_contig12362:2875..3316Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12362 2876..3316 -
1696845626.706169-UTR-H-canaliculatus_F_contig12362:2875..33161696845626.706169-UTR-H-canaliculatus_F_contig12362:2875..3316Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12362 2876..3316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.337974-CDS-H-canaliculatus_F_contig12362:1072..12021622928951.337974-CDS-H-canaliculatus_F_contig12362:1072..1202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 1073..1202 -
1696845626.6708841-CDS-H-canaliculatus_F_contig12362:1072..12021696845626.6708841-CDS-H-canaliculatus_F_contig12362:1072..1202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 1073..1202 -
1622928951.351383-CDS-H-canaliculatus_F_contig12362:2012..21291622928951.351383-CDS-H-canaliculatus_F_contig12362:2012..2129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 2013..2129 -
1696845626.6821566-CDS-H-canaliculatus_F_contig12362:2012..21291696845626.6821566-CDS-H-canaliculatus_F_contig12362:2012..2129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 2013..2129 -
1622928951.3602228-CDS-H-canaliculatus_F_contig12362:2774..28751622928951.3602228-CDS-H-canaliculatus_F_contig12362:2774..2875Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 2775..2875 -
1696845626.6920602-CDS-H-canaliculatus_F_contig12362:2774..28751696845626.6920602-CDS-H-canaliculatus_F_contig12362:2774..2875Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12362 2775..2875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12362.2010.1

>prot_H-canaliculatus_F_contig12362.2010.1 ID=prot_H-canaliculatus_F_contig12362.2010.1|Name=mRNA_H-canaliculatus_F_contig12362.2010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MHAVVTQFLNLVTGEHVRSDLFWRDHVTTGICQRFGTVALTDSERAGLWT
VCSDRPDLLLTILKELVKVTGVRFKESVNRRLRSKSARSSIVGFKFHLTD
IRDIEAVVTPMAIYQ*
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mRNA from alignment at H-canaliculatus_F_contig12362:15..3316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12362.2010.1 ID=mRNA_H-canaliculatus_F_contig12362.2010.1|Name=mRNA_H-canaliculatus_F_contig12362.2010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12362:15..3316- (Hapterophycus canaliculatus Oshoro5f female)
CGTTGTCGGTGGGTGGTGACGTATGTGCATGGGTCACTTCGCCCTCGACG
TTTAACCTCCAGCTTGCGCGCACGCCTCACCGTGCGGAACGCCGACCCCG
GTCCCCGTCCCCCGTCCCCTGTTCGCCATCGCACCTCCAACCAGCGGCCA
CCTGTTTCTTGACTTGCTTGGACTGAGCAACGGCTAGAGGACCACCCTGG
CCACCGCCAGCCCTACAGTACCTCGAGTCAAACCACGCTGCCCATTTCGC
TCACGCACCGCACACACGCAGCCCTCCGGGGGAGATTTCCACAAAACATG
GGGAGACGACCTTGCGGCGCACGTCGACGACGATACGTCTGTCTAGCGTT
TTCTTGAGAGCCCTCCGACCAAACCAAGCGACACTCCCTAAAACTGCTGC
GATCGCGACCGTACCGCCCCGCGCGCCCGCCCACACAGGGAATGCACGCC
GTGGTCACCCAGTTCCTCAATCTCGTGACCGGGGAGCACGTGCGTTCCGA
CCTCTTCTGGCGCGATCATGTCACCACCGGCATCTGTCAAAGGTACCAGA
GCTGACGCTCGCCGTAGTTGGCCGTTTGAGGGCCGCGAGGGCGAGGCGCC
GTGGTCGCCCTTTACTGCTGCGTTGCCGTCGGGCGAAGGCGTCGCGCTAC
GAACAAGGACGGGCGTGTGCGGGAAGTTTGGGTGTGCCCCCCCCCCCCCC
CCCCCCCCCCCGCGGGGGGGGGGGCCCGCCCCGGGGGGGGGGGTGTGTGG
GGGGGGTGGTTNNNNNNNNNNGGCGGGGGGGGGGGGGGGCCGGGGGGCCC
CTTTCTGGGTGGGTGGCGGGGGGGGGAGGGGGTCCCCCCCCGAAAAAGGG
GGGGGGGGGGGGGGAAGTTGGGGGGGGCCCCCCCCCCCCCCCGTGTGTGT
GTGTGTGTGGCCCATCAACGGGGCAGGGATTTTTCGAAGCCGGGCTTTTG
TTTCAAGCCGCAAGCCGGAGCAACATCCACGCAAGCGCCGTAGGAAGCAG
TCGTGCTCAGAGCCGCCTTGTCGCGAGCGACTTCGCATCGTACCCCCGTT
ACCTTCCGTGTCTGTCCGCGGCCGTTCACCATCTCCTGTCGTTCTCGTCC
ACACACGCGCGAGCTCTTCTCGTCGCCCCGCTCCTCCCCCGACGCGCCTT
CGGGCGTCGCCCTCTTTCACGACCGCGCGCGTCTCAGGTTCGGCACGGTA
GCCCTGACCGACTCGGAACGCGCGGGCCTGTGGACGGTCTGCTCGGACCG
CCCGGACCTGTTGCTCACCATCTTGAAGGAGCTGGTCAAGGTCACCGGCG
TCAGGCAAGAGAAAAGGCCACGAGTGGCCGCGGGGGGCATAAACCCTTGC
GCGTGTTTGGAAAGAACGCGCCTGTCGAGGGCGAAAGAGCGCGAGCGCCC
TGGTGCTGTTTCCACTTTTTCTGTTCGCGCGTTCGCTTTGGACCGGGATC
TAGATTTTAGAAGCAAAATCGGCGCGGACGATAAAACGGGTCCCTCCCGC
GGGGGCTGTCGACAAGCGGGGACCGTTCTTCGGAACGGTCTGATACGAAA
AAAAAGGCGAGACAACGCACGGGTAGGGCCCTCGCCCCGTCACCCGGCCC
CTTCCATGCCTTGTCCACGGAAACGCGCCGGCGTGCGTTTGTTGTCGATC
GATCAGGTGAACTTGGGCGTCTACAAATCGCCGCGTTGTTTGTTCGTCGG
TGGTGTAGGGAACCGTTGCGACCCCTACAGTGCGGATGGCATCTCCGCGC
GGCCTGCCCCTGGTCGCGGTAGAGCGTGCGCTTCACCGTAAACGACACGA
GATAAGCCACCCCCTGGAACGATTTTCGGCGGCGGATTTCTCCACGATAG
CGGTGGCGCTGCCGCCAACCAATGCGTCTTCGTAGAGGTCTTAACCAGAG
CTTTCTACTGCCATGTTTTTGGGCGCTGACCCCCCCCGTTGTTGTGGAGG
ACTCCGCCACCGAAAATCGGTCGAGGGGGTGGTGTATCTTGTGTCGTACA
CGGTAGCCTAGGCCCTCACGAGTCGCCTCCCCCGCGTCCTGAAAAACAAA
AAACAAGCGAAAAACATTCCTCCTCGCCCTGTTCCCGGGTGCCTCCAAAA
CTCGCGGACGGCAGGTTCAAGGAGAGCGTCAACCGGAGGCTGCGAAGCAA
GTCGGCCAGGTCCAGCATCGTGGGCTTCAAGTTCCACCTCACGGACATCC
GTGACATCGAGGCGGTTGTCACCCCCATGGCCATCTACCAGTGACCCGTT
TCCGGAAGAGTCGCATGGAACAAAAAGGAAAAAGAGTGGCCGGTCTAGAG
GGCGCATGCGTGCGAATGAGGGCGAAAAACTACCGGATACCCCCGTCGAC
GGTGTCTCCAGGCGGCAGGCGACTTCCCCATGAAAAAAAAAGATGTTTGT
TGGACGAGCCCACTAGAGATTTTTTCCGGGCTCGTTTCCTCCTGCTATGC
TGACAAGTTTTCTCGCTCGTCGGCTGGTTGGCTCGTGATTGTTAGTTAGA
TGTATCCTCGCATGCTGTGTCGCGCGCAGGCAGCCCCGTCCCATAATCGT
TACCATAAAATTTGATGTATTCCCCAGCGAGAGTCGACACAATTTGCCGA
CCTCATTGCTTGCCGAGCAAGCTCTCTATTCTCCGCGAGGAAAGGTCGAA
GGAAGTCAACCGAAAGCTGAAGAACGGGCTAGGGTAGGCTCGTTCGTTCC
TCCCCTCGCCGTGTTCCGTGTTGGTCCCTGTTCTCCCATCGGCGGTTGCG
TTATTTTTGTGGCGTTCTCGTGCTCGCGACCACCCCAGGACGTGATCGAT
AGCGTTGTGATCCGGGTCTCGTCGGCCTGTCGGCGCCCGCTCCCCTCGCT
TGCTCGTTTTGTGCGTGTTGTGGATGACGCCATCACCGATACTTGGGGTC
TGTTTTGCGTTATTGCCGTGTTTCTCCCCGTAATTGGTCATCATTTTGTG
TCCTCACGTCGCAGTCCCTCTCCCCCTTCCGGGCTTCAGGTTCCGCCCGT
GCGTTTGTCCAGGCTCTCACAGTGGACACCCCCGTTTCGGAATTTTCCTT
CGTGTTTTTTCTTGATCACGTATCGATGTGGTTGCTCCTGATACCTTGAA
ATAAGGTGGAGCTGCTTGCTTGAGTACTGCGGTTGCGTGTTTTTTGCCGA
GAGACTTCAACCTCGTGTAGCTCATGTAGCTTTGACCTGGGTTCCGTCGG
CGGCGTGTGAGCACGCAGGGGTAGAACGCCGTTGCCGCCGTGGCGATCCG
TAAGGAACGCAGCGCGAGCCGGGGGCACTAAACGTGCCGACCCCCCCCCC
CC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12362:15..3316-

>mRNA_H-canaliculatus_F_contig12362.2010.1 ID=mRNA_H-canaliculatus_F_contig12362.2010.1|Name=mRNA_H-canaliculatus_F_contig12362.2010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12362:15..3316- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACGCCGTGGTCACCCAGTTCCTCAATCTCGTGACCGGGGAGCACGT
GCGTTCCGACCTCTTCTGGCGCGATCATGTCACCACCGGCATCTGTCAAA
GATGCACGCCGTGGTCACCCAGTTCCTCAATCTCGTGACCGGGGAGCACG
TGCGTTCCGACCTCTTCTGGCGCGATCATGTCACCACCGGCATCTGTCAA
AGGTTCGGCACGGTAGCCCTGACCGACTCGGAACGCGCGGGCCTGTGGAC
GGTCTGCTCGGACCGCCCGGACCTGTTGCTCACCATCTTGAAGGAGCTGG
TCAAGGTCACCGGCGTCAGGTTCGGCACGGTAGCCCTGACCGACTCGGAA
CGCGCGGGCCTGTGGACGGTCTGCTCGGACCGCCCGGACCTGTTGCTCAC
CATCTTGAAGGAGCTGGTCAAGGTCACCGGCGTCAGGTTCAAGGAGAGCG
TCAACCGGAGGCTGCGAAGCAAGTCGGCCAGGTCCAGCATCGTGGGCTTC
AAGTTCCACCTCACGGACATCCGTGACATCGAGGCGGTTGTCACCCCCAT
GGCCATCTACCAGTGAGTTCAAGGAGAGCGTCAACCGGAGGCTGCGAAGC
AAGTCGGCCAGGTCCAGCATCGTGGGCTTCAAGTTCCACCTCACGGACAT
CCGTGACATCGAGGCGGTTGTCACCCCCATGGCCATCTACCAGTGA
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