mRNA_H-canaliculatus_F_contig12355.2006.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12355.2006.1
Unique NamemRNA_H-canaliculatus_F_contig12355.2006.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12355.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12355contigH-canaliculatus_F_contig12355:67..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12355.2006.1prot_H-canaliculatus_F_contig12355.2006.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12355 309..638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.9719214-UTR-H-canaliculatus_F_contig12355:66..3081622928950.9719214-UTR-H-canaliculatus_F_contig12355:66..308Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12355 67..308 +
1696845626.4179273-UTR-H-canaliculatus_F_contig12355:66..3081696845626.4179273-UTR-H-canaliculatus_F_contig12355:66..308Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12355 67..308 +
1622928951.0120556-UTR-H-canaliculatus_F_contig12355:638..6571622928951.0120556-UTR-H-canaliculatus_F_contig12355:638..657Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12355 639..657 +
1696845626.442979-UTR-H-canaliculatus_F_contig12355:638..6571696845626.442979-UTR-H-canaliculatus_F_contig12355:638..657Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12355 639..657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.9882827-CDS-H-canaliculatus_F_contig12355:308..6381622928950.9882827-CDS-H-canaliculatus_F_contig12355:308..638Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12355 309..638 +
1696845626.429681-CDS-H-canaliculatus_F_contig12355:308..6381696845626.429681-CDS-H-canaliculatus_F_contig12355:308..638Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12355 309..638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12355.2006.1

>prot_H-canaliculatus_F_contig12355.2006.1 ID=prot_H-canaliculatus_F_contig12355.2006.1|Name=mRNA_H-canaliculatus_F_contig12355.2006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MGWSLLIHRMPRPAPPPSPPPSPSPPNGGDIIKPEHRGKGGAGLVATATT
DRAAWLRARGIGFPRATAGCFSFSRWTERAKAGQHVGSSRPAPNVDAGKY
SRKRGRTRT*
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mRNA from alignment at H-canaliculatus_F_contig12355:67..657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12355.2006.1 ID=mRNA_H-canaliculatus_F_contig12355.2006.1|Name=mRNA_H-canaliculatus_F_contig12355.2006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=591bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12355:67..657+ (Hapterophycus canaliculatus Oshoro5f female)
CAGACCGAGAGCGAAGAAAAGCTGGCTGGTGAAGCGCCCGTGGTAGTCGG
GCCCATTCTTTTGGGTACGTGCGTTTTAATTTTGCACCAACGTCAAGCGC
ATTATCTGTATACTGTGACATATCTTGGTGTTTTTCGCTTTTTTCTGTCT
GTTTTACTGGCCGATGCATGTAGTCGAGTTCAACATTTTTTATATCTTAC
CCGGTACTTTTCACATGATGAGGTTTTCATGCGGTGGAATGGATGGGCTG
GTCTCTATTGATCCATCGAATGCCACGCCCCGCGCCCCCTCCTTCCCCCC
CGCCCTCCCCATCCCCTCCGAACGGAGGAGATATTATCAAACCTGAACAC
AGAGGGAAGGGAGGGGCGGGGCTTGTTGCCACGGCTACGACTGACAGAGC
TGCTTGGCTTCGAGCGCGCGGTATTGGCTTTCCTCGCGCCACTGCAGGCT
GTTTTTCTTTCAGTCGCTGGACTGAAAGGGCTAAAGCGGGCCAGCACGTT
GGTTCGTCCCGTCCCGCGCCCAACGTGGACGCCGGGAAATATTCCCGCAA
AAGAGGCCGGACTAGGACATGAAAGCTTGGGAAGGGTGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12355:67..657+

>mRNA_H-canaliculatus_F_contig12355.2006.1 ID=mRNA_H-canaliculatus_F_contig12355.2006.1|Name=mRNA_H-canaliculatus_F_contig12355.2006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12355:67..657+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTGGTCTCTATTGATCCATCGAATGCCACGCCCCGCGCCCCCTCC
TTCCCCCCCGCCCTCCCCATCCCCTCCGAACGGAGGAGATATTATCAAAC
CTGAACACAGAGGGAAGGGAGGGGCGGGGCTTGTTGCCACGGCTACGACT
GACAGAGCTGCTTGGCTTCGAGCGCGCGGTATTGGCTTTCCTCGCGCCAC
TGCAGGCTGTTTTTCTTTCAGTCGCTGGACTGAAAGGGCTAAAGCGGGCC
AGCACGTTGGTTCGTCCCGTCCCGCGCCCAACGTGGACGCCGGGAAATAT
TCCCGCAAAAGAGGCCGGACTAGGACATGAATGGGCTGGTCTCTATTGAT
CCATCGAATGCCACGCCCCGCGCCCCCTCCTTCCCCCCCGCCCTCCCCAT
CCCCTCCGAACGGAGGAGATATTATCAAACCTGAACACAGAGGGAAGGGA
GGGGCGGGGCTTGTTGCCACGGCTACGACTGACAGAGCTGCTTGGCTTCG
AGCGCGCGGTATTGGCTTTCCTCGCGCCACTGCAGGCTGTTTTTCTTTCA
GTCGCTGGACTGAAAGGGCTAAAGCGGGCCAGCACGTTGGTTCGTCCCGT
CCCGCGCCCAACGTGGACGCCGGGAAATATTCCCGCAAAAGAGGCCGGAC
TAGGACATGA
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