mRNA_H-canaliculatus_F_contig12347.2002.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12347.2002.1
Unique NamemRNA_H-canaliculatus_F_contig12347.2002.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: D8LIB3_ECTSI (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB3_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 4.380e-52
Identity = 86/99 (86.87%), Postives = 87/99 (87.88%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  RDCKVIDSWVGRFPQAVTCFSPGSY NRP QA  GSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAAN  MD FPG   RRSPVLQTEPDEPQV+
Sbjct:  413 PEFRDCKVIDSWVGRFPQAVTCFSPGSYVNRPLQAVRGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANYVMDSFPGVEARRSPVLQTEPDEPQVA 511          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A7J7QK55_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QK55_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 4.970e-30
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  +D  V+DS V RFP+AVT FSPGSYA+RP Q     N F+AGDWVKGV HGANGLSQERAYVTGLTAAN  +D+     G ++ VL  EPDEP ++
Sbjct:  401 PGFKDANVVDSAVLRFPKAVTHFSPGSYASRPHQVTSIPNCFLAGDWVKGVSHGANGLSQERAYVTGLTAANLVVDHC--GQGSKAVVLDVEPDEPHIA 497          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A383VDW2_TETOB (Amino_oxidase domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VDW2_TETOB)

HSP 1 Score: 117 bits (293), Expect = 1.320e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   22 VIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            V+DS V RFP+AVT FSPGSYA+RP QA    N F+AGDWVKGV HGANGLSQERAYVTGLTAAN  +D+     G ++ VL  EPDEP ++
Sbjct:  482 VVDSAVLRFPKAVTHFSPGSYASRPFQATSIPNCFLAGDWVKGVSHGANGLSQERAYVTGLTAANLVVDHC--GQGSKAVVLDVEPDEPHIA 571          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A8J4F5Z3_9CHLO (Amino_oxidase domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4F5Z3_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 3.570e-28
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  +  KV DS V RFP+AVT FSPGSY +RP QA    NVF+AGDWVKGV HGANGLSQERAYVTGL+AAN  +    G+ G+ + +L  EPDEP ++
Sbjct:  487 PGFKGAKVTDSIVLRFPKAVTHFSPGSYQHRPFQATTIPNVFMAGDWVKGVPHGANGLSQERAYVTGLSAANLVISRLGGN-GQPAQILDVEPDEPHIA 584          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: D8TQS8_VOLCA (Amino_oxidase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQS8_VOLCA)

HSP 1 Score: 116 bits (290), Expect = 3.880e-28
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  +  KV+DS V RF +AVT FSPGSY +RP QA    NVF+AGDWVKGV HGANGLSQERAYVTGL+AAN  M    G  G+ + +L  EPDEP ++
Sbjct:  523 PGFKGAKVVDSIVLRFARAVTHFSPGSYQHRPFQATSIPNVFMAGDWVKGVPHGANGLSQERAYVTGLSAANLVMSRL-GGGGQPAQILDVEPDEPHIA 620          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: I0Z4X3_COCSC (FAD/NAD(P)-binding domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z4X3_COCSC)

HSP 1 Score: 115 bits (287), Expect = 5.250e-28
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   19 KVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVSLL 303
            ++IDS V RFP+AVT FSPGSYA+RP Q     NVF+AGDWVKGV HGANGLSQERAYVTGL AAN  +D      G  + +L  EPDEP ++ L
Sbjct:  379 RIIDSAVLRFPKAVTHFSPGSYASRPLQTTSFGNVFMAGDWVKGVPHGANGLSQERAYVTGLRAANMVVDKLGW--GVHADILPVEPDEPYIAAL 471          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A2K3D0U9_CHLRE (Amino_oxidase domain-containing protein n=5 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D0U9_CHLRE)

HSP 1 Score: 115 bits (287), Expect = 8.940e-28
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  +  KV+DS V R+P+AVT FSPGSY  RP QA    N F+AGDWVKGV HGANGLSQERAYVTGL AAN  M    G  G+++ +L  +PDEP ++
Sbjct:  476 PGFKGAKVVDSIVLRYPKAVTHFSPGSYPYRPFQATSIPNTFMAGDWVKGVPHGANGLSQERAYVTGLVAANLVMQRL-GGGGQQAEILDVDPDEPHIA 573          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A2P6V4Q8_9CHLO (Amine oxidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4Q8_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 9.560e-28
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  RD KV+DS V RFP+AVT FSPGS   RP QA    N+F+AGDWVKG+ HGANGLSQERAYV+GL AAN  +    GH G R+ +L  EPDEP ++
Sbjct:  416 PAFRDAKVVDSAVLRFPRAVTHFSPGSAQWRPTQATSFGNLFLAGDWVKGLQHGANGLSQERAYVSGLEAANLVVGRL-GH-GERADILPVEPDEPHIA 512          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A250WSE0_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WSE0_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 1.810e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   19 KVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVSL 300
            +V+DS V RFP+AVT FSPGS+  RP Q     N+FVAGDWVKGV HGANGLSQERAYVTGL AAN  +D      G R+ +L TEPDEP + +
Sbjct:  433 QVLDSAVLRFPKAVTHFSPGSHQYRPYQNTSIPNLFVAGDWVKGVLHGANGLSQERAYVTGLIAANLVVDRL--GMGSRARILDTEPDEPHIQI 524          
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Match: A0A835Y9J8_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y9J8_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 5.540e-26
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKGVDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVS 297
            P  +  +V+DS V R+P+AVT FSPGSY  RP QA    N+F+AGDWVKGV HGANGLSQERAYVTGL+AAN  +       G ++ +L  EPDEP ++
Sbjct:  486 PGFKSAQVVDSVVLRYPKAVTHFSPGSYPFRPFQATTIPNLFMAGDWVKGVPHGANGLSQERAYVTGLSAANLVVQRL--GLGSQAEILDVEPDEPHIA 582          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12347.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB3_ECTSI4.380e-5286.87Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
A0A7J7QK55_9CHLO4.970e-3061.62Amino_oxidase domain-containing protein n=1 Tax=Sc... [more]
A0A383VDW2_TETOB1.320e-2865.22Amino_oxidase domain-containing protein n=2 Tax=Te... [more]
A0A8J4F5Z3_9CHLO3.570e-2860.61Amino_oxidase domain-containing protein n=3 Tax=Vo... [more]
D8TQS8_VOLCA3.880e-2860.61Amino_oxidase domain-containing protein n=1 Tax=Vo... [more]
I0Z4X3_COCSC5.250e-2862.11FAD/NAD(P)-binding domain-containing protein n=2 T... [more]
A0A2K3D0U9_CHLRE8.940e-2858.59Amino_oxidase domain-containing protein n=5 Tax=Ch... [more]
A0A2P6V4Q8_9CHLO9.560e-2860.61Amine oxidase n=1 Tax=Micractinium conductrix TaxI... [more]
A0A250WSE0_9CHLO1.810e-2661.70Amino_oxidase domain-containing protein n=1 Tax=Ch... [more]
A0A835Y9J8_9CHLO5.540e-2656.57Amino_oxidase domain-containing protein n=1 Tax=Ed... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12347contigH-canaliculatus_F_contig12347:89..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue3.5e-43
Seed eggNOG ortholog2880.D8LIB3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-24_001500.1
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.4240613-CDS-H-canaliculatus_F_contig12347:88..2681622928950.4240613-CDS-H-canaliculatus_F_contig12347:88..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12347 89..268 +
1696845626.179411-CDS-H-canaliculatus_F_contig12347:88..2681696845626.179411-CDS-H-canaliculatus_F_contig12347:88..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12347 89..268 +
1622928950.4358187-CDS-H-canaliculatus_F_contig12347:1058..11811622928950.4358187-CDS-H-canaliculatus_F_contig12347:1058..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12347 1059..1181 +
1696845626.1897447-CDS-H-canaliculatus_F_contig12347:1058..11811696845626.1897447-CDS-H-canaliculatus_F_contig12347:1058..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12347 1059..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12347.2002.1prot_H-canaliculatus_F_contig12347.2002.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12347 89..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12347.2002.1

>prot_H-canaliculatus_F_contig12347.2002.1 ID=prot_H-canaliculatus_F_contig12347.2002.1|Name=mRNA_H-canaliculatus_F_contig12347.2002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
PRERDCKVIDSWVGRFPQAVTCFSPGSYANRPRQAFPGSNVFVAGDWVKG
VDHGANGLSQERAYVTGLTAANCAMDYFPGHAGRRSPVLQTEPDEPQVSL
L
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mRNA from alignment at H-canaliculatus_F_contig12347:89..1181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12347.2002.1 ID=mRNA_H-canaliculatus_F_contig12347.2002.1|Name=mRNA_H-canaliculatus_F_contig12347.2002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12347:89..1181+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCGCGAAAGAGATTGCAAGGTGATCGACAGCTGGGTTGGGAGATTCCC ACAGGCCGTGACGTGCTTTAGTCCGGGGTCGTACGCCAACCGCCCACGCC AGGCATTCCCAGGCTCGAACGTTTTCGTCGCTGGCGACTGGGTCAAGGGT GTCGACCACGGTGCCAACGGGCTCAGCCAGGTTCGTTCTGTGTGCACCGG TCCCATTTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTCGTTTTCGTGCGTGTTCGCCCACAAGAAGGGGTGG AAGCCTCGCACCTCTTCCAGCTCTCCGTGCGTCTGCGCGTTTCTAGCAGA GAGCGCGCGCGGTATAGATTTGGCTAAAAACAACCAAATGCGGGAGAAAC GGCTTCGAGCTGTTTCTTAAGAGCGCCAAGACTCCGGATGTGTTCGGGGG AGAAGGACCAGGGGCCGGAGCTCTTCTGAGGCGGCACCCATCCACTCGTG TCGGATTATTCACAAGACCGACGAACCAATCAATACACACCGACCAGAGG GGGTGGGGGAGCTGGGCAGCTCCTTCGCGGTTGCCGGTGCCTCGATTTTC TCCCGCGGAAAGCAACGCCTCCTCGGTGGAAATCTCCCCGTGACACCTTC GCAGCGCCTTCGGCCACCCGGACAGACGGCGGGAGGCGGGTTGTCCCGAC CGAAGGGCCTGCTTCCACGGCCGAAGCAGCATCAAGGAGAGGACAAAGCA AGAACATCCTTGGCTGCTGTTAATTATTCCATGATTGGAACAAGATTAAT CGAAAATAAGAAAAATCCGCGTTGCAGTCTCGAGGGCACTACTGAAAATG GAGATACACACACACACACACACACACACACACACACACACGAAATGCCC TCGACAAAAATGGGCATCGTAAACAGAGCAGCTACACGACGGTAAACCGC CGCTGTTTCGTTGTGTGCAGGAAAGGGCGTACGTGACCGGGCTGACCGCC GCGAACTGCGCCATGGACTACTTCCCCGGGCACGCGGGCCGGAGATCCCC CGTCCTCCAGACGGAGCCGGACGAGCCGCAGGTATCCTTGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12347:89..1181+

>mRNA_H-canaliculatus_F_contig12347.2002.1 ID=mRNA_H-canaliculatus_F_contig12347.2002.1|Name=mRNA_H-canaliculatus_F_contig12347.2002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12347:89..1181+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCGCGAAAGAGATTGCAAGGTGATCGACAGCTGGGTTGGGAGATTCCC
ACAGGCCGTGACGTGCTTTAGTCCGGGGTCGTACGCCAACCGCCCACGCC
AGGCATTCCCAGGCTCGAACGTTTTCGTCGCTGGCGACTGGGTCAAGGGT
GTCGACCACGGTGCCAACGGGCTCAGCCAGCCTCGCGAAAGAGATTGCAA
GGTGATCGACAGCTGGGTTGGGAGATTCCCACAGGCCGTGACGTGCTTTA
GTCCGGGGTCGTACGCCAACCGCCCACGCCAGGCATTCCCAGGCTCGAAC
GTTTTCGTCGCTGGCGACTGGGTCAAGGGTGTCGACCACGGTGCCAACGG
GCTCAGCCAGGAAAGGGCGTACGTGACCGGGCTGACCGCCGCGAACTGCG
CCATGGACTACTTCCCCGGGCACGCGGGCCGGAGATCCCCCGTCCTCCAG
ACGGAGCCGGACGAGCCGCAGGTATCCTTGCTGGAAAGGGCGTACGTGAC
CGGGCTGACCGCCGCGAACTGCGCCATGGACTACTTCCCCGGGCACGCGG
GCCGGAGATCCCCCGTCCTCCAGACGGAGCCGGACGAGCCGCAGGTATCC
TTGCTG
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